Safety improvement of the open sun dried Egyptian Siwi dates using closed solar dryer.

Egyptian Siwi dates dried using the open sun drying is exposed to different contaminants. So, the current study aims to use the closed solar dryer to improve Siwi date safety. The impact of washing and closed solar drying on the levels of microbial load, aflatoxins and heavy metals in Egyptian Siwi dates (ESD), in comparison to traditional open sun drying methods were examined. Two different drying techniques were employed to dry 300 kg of ESD. The microbial load was assessed following the two drying procedures. The levels of aflatoxins and heavy metals were analyzed using High-performance liquid chromatography (HPLC) and Inductively Coupled Plasma (ICP) techniques, respectively, after both drying methods. Additionally, the influence of storage time on the microbial load of the ESD was also evaluated using standard methods. The findings of the current study demonstrated that the closed solar drying significantly reduced the total bacterial and fungal counts by 96 % and 93 %, respectively, when compared to open sun-drying. No aflatoxins were detected in both fresh Siwi dates and Siwi dates dried using closed solar drying. However, after open sun drying, two aflatoxins; aflatoxin B1 (AFB1) and aflatoxin G1 (AFG1), were detected in the ESD, with concentrations of 0.95 and 0.23 µg kg-1, respectively. The closed solar drying significantly decreased the levels of lead (Pb), cadmium (Cd), copper (Cu), nickel (Ni), chromium (Cr), zinc (Zn), manganese (Mn), and iron (Fe) in the dried dates by 96 %, 94 %, 48 %, 71 %, 64 %, 4 %, 26 %, and 7 %, respectively, when compared to open sun drying. The stored Siwi dates that was exposed to the open sun drying showed a higher increase in bacterial (4.86 log CFU/g) and fungal (4.46 log CFU/g) counts. However, the stored Siwi dates that was exposed to the closed solar dryer showed a lower increase in bacterial (3.21 log CFU/g) and fungal (2.51 log CFU/g) counts. So, the duration of storage significantly impacted the microbial loads of the closed solar dried dates as compared to open sun drying. Overall, closed solar drying reduced the levels of investigated contaminants and extended the shelf life of ESD, thereby enhancing their safety for human consumption.

Quantitative Trait Loci and Candidate Genes That Control Seed Sugars Contents in the Soybean 'Forrest' by 'Williams 82' Recombinant Inbred Line Population.

Soybean seed sugars are among the most abundant beneficial compounds for human and animal consumption in soybean seeds. Higher seed sugars such as sucrose are desirable as they contribute to taste and flavor in soy-based food. Therefore, the objectives of this study were to use the 'Forrest' by 'Williams 82' (F × W82) recombinant inbred line (RIL) soybean population (n = 309) to identify quantitative trait loci (QTLs) and candidate genes that control seed sugar (sucrose, stachyose, and raffinose) contents in two environments (North Carolina and Illinois) over two years (2018 and 2020). A total of 26 QTLs that control seed sugar contents were identified and mapped on 16 soybean chromosomes (chrs.). Interestingly, five QTL regions were identified in both locations, Illinois and North Carolina, in this study on chrs. 2, 5, 13, 17, and 20. Amongst 57 candidate genes identified in this study, 16 were located within 10 Megabase (MB) of the identified QTLs. Amongst them, a cluster of four genes involved in the sugars' pathway was collocated within 6 MB of two QTLs that were detected in this study on chr. 17. Further functional validation of the identified genes could be beneficial in breeding programs to produce soybean lines with high beneficial sucrose and low raffinose family oligosaccharides.

Biosorption of Uranium from aqueous solution by green microalga Chlorella sorokiniana.

Uranium and its compounds are radioactive and toxic, as well as highly polluting and damaging the environment. Novel uranium adsorbents with high biosorption capacity that are both eco-friendly and cost-effective are continuously being researched. The non-living biomass of the fresh water green microalga Chlorella sorokiniana was used to study the biosorption of uranium from aqueous solution. The biosorption of uranium from aqueous solutions onto the biomass of microalga C. sorokiniana was investigated in batch studies. The results showed that the optimal pH for uranium biosorption onto C. sorokiniana was 2.5. Uranium biosorption occurred quickly, with an equilibrium time of 90 min. The kinetics followed a pseudo-second-order rate equation, and the biosorption process fit the Langmuir isotherm model well, with a maximum monolayer adsorption capacity of 188.7 mg/g. The linear plot of the DKR model revealed that the mean free energy E = 14.8 kJ/mol, confirming chemisorption adsorption with ion exchange mode. The morphology of the algal biomass was investigated using a scanning electron microscope and energy dispersive X-ray spectroscopy. The FTIR spectroscopy analysis demonstrated that functional groups (carboxyl, amino, and hydroxyl) on the algal surface could contribute to the uranium biosorption process, which involves ion exchange and uranium absorption, and coordination mechanisms. Thermodynamic simulations indicated that the uranium biosorption process was exothermic (ΔH = -19.5562 kJ/mol) and spontaneous at lower temperatures. The current study revealed that C. sorokiniana non-living biomass could be an efficient, rapid, low-cost, and convenient method of removing uranium from aqueous solution.

Improving the nutritional value and digestibility of wheat straw, rice straw, and corn cob through solid state fermentation using different Pleurotus species.

BACKGROUND: The growing food-feed-fuel competition, declining availability of traditional feeds, higher prices, and the urgent need to provide long-term sustainability for animal production have all triggered global research into the optimum extraction of energy and nutrients from lignin-rich plant biomass. Recent studies have shown that the Pleurotus species of white rot fungus can selectively degrade lignin in lignin-rich plant biomass; however, its effectiveness in selectively degrading lignin depends on the type of substrate and species of fungus. This study was therefore designed to treat wheat straw, rice straw, and corn cob, with Pleurotus eryngii, P. ostreatus, and P. florida for 30 days under solid-state fermentation, to identify a promising fungus-substrate combination for the selective degradation of lignin and optimal improvement in the nutritional value and digestibility of each substrate. RESULTS: The type of fungus strongly influenced (P < 0.01) selectivity in lignin degradation, and the level of improvement in crude protein (CP), in vitro dry matter digestibility (IVDMD), and in vitro gas production (IVGP), in wheat straw, rice straw, and corn cob. Fungus-substrate interaction data revealed that P. ostreatus caused maximum (P < 0.05) degradation of lignin, and greater (P < 0.05) improvement in CP, IVDMD, and IVGP in wheat straw and rice straw. The lowest (P < 0.05) degradation of lignin and improvement in CP, IVDMD, and IVGP was caused by P. eryngii in corn cob. Among the fungi, the maximum (P < 0.05) degradation of lignin, and greater (P < 0.05) improvement in CP, IVDMD, and IVGP were caused by P. florida as compared with those of P. ostreatus and P. eryngii. CONCLUSION: The results highlight significant influence of fungus-substrate combination for selective lignin degradability and the consequent improvement in the nutritional value of the substrates. Maximum selective lignin degradability and improvement in nutritional value and digestibility was caused by P. ostreatus in wheat straw and in rice straw, and by P. florida in corn cob. © 2021 Society of Chemical Industry.

Nanocarbon hybrid for simultaneous removal of arsenic, iron and manganese ions from aqueous solutions.

Heavy metal contamination is a severe problem with serious ecological and human health effects due to its toxic effect and tendency to accumulate throughout the food chain. Batch experiments were conducted to investigate the simultaneous removal of arsenic, iron and manganese ions from aqueous solutions using Nanocarbon hybrid (NCH). Nanocarbon hybrid (NCH) of carbon xerogel decorated with 1wt% multi-walled carbon nanotubes was prepared by carbonization at 850 °C for 2 h. The TEM, SEM, EDX, FTIR, and N2 adsorption-desorption measurements were used to characterize the prepared NCH. NCH is enriched with surface oxygen functional groups and micropores as well as it have total surface area of 162 m2/g and total pore volume of 0.129 cm3/g. The adsorption of metal ions onto NCH, which confirmed by EDX, happened quickly, with 30%, 97%, and 41% of As, Fe, and Mn adsorbed in less than 10 min, however the equilibrium time was achieved in less than 30 min. The maximum adsorption capacities for As, Fe, and Mn ions onto NCH were 20, 48, and 21 mg/g, respectively. The experimental adsorption results of the three metal ions showed linearly fitting with Freundlich isotherms. In addition, the computed adsorption energies for Fe, Mn, and As ions were 4.08, 1.95, and 2.42 kJ/mol, indicating physical adsorption. NCH are easily regenerated and reusable sorbent owing to the adsorption-desorption studies. Conclusively, NCH is promising material for removing mixture of metal ions from aqueous media.

Genome-wide identification and analysis of soybean acyl-ACP thioesterase gene family reveals the role of GmFAT to improve fatty acid composition in soybean seed.

KEY MESSAGE: Soybean acyl-ACP thioesterase gene family have been characterized; GmFATA1A mutants were discovered to confer high oleic acid, while GmFATB mutants presented low palmitic and high oleic acid seed content. Soybean oil stability and quality are primarily determined by the relative proportions of saturated versus unsaturated fatty acids. Commodity soybean typically contains 11% palmitic acid, as the primary saturated fatty acids. Reducing palmitic acid content is the principal approach to minimize the levels of saturated fatty acids in soybean. Though high palmitic acid enhances oxidative stability of soybean oil, it is negatively correlated with oil and oleic acid content and can cause coronary heart diseases for humans. For plants, acyl-acyl carrier protein (ACP) thioesterases (TEs) are a group of enzymes to hydrolyze acyl group and release free fatty acid from plastid. Among them, GmFATB1A has become the main target to genetically reduce the palmitic acid content in soybean. However, the role of members in soybean acyl-ACP thioesterase gene family is largely unknown. In this study, we characterized two classes of TEs, GmFATA, and GmFATB in soybean. We also denominated two GmFATA members and discovered six additional members that belong to GmFATB gene family through phylogenetic, syntenic, and in silico analysis. Using TILLING-by-Sequencing+, we identified an allelic series of mutations in five soybean acyl-ACP thioesterase genes, including GmFATA1A, GmFATB1A, GmFATB1B, GmFATB2A, and GmFATB2B. Additionally, we discovered mutations at GmFATA1A to confer high oleic acid (up to 34.5%) content, while mutations at GmFATB presented low palmitic acid (as low as 5.6%) and high oleic acid (up to 36.5%) phenotypes. The obtained soybean mutants with altered fatty acid content can be used in soybean breeding program for improving soybean oil composition traits.

TILLING-by-Sequencing+ Reveals the Role of Novel Fatty Acid Desaturases (GmFAD2-2s) in Increasing Soybean Seed Oleic Acid Content.

Soybean is the second largest source of oil worldwide. Developing soybean varieties with high levels of oleic acid is a primary goal of the soybean breeders and industry. Edible oils containing high level of oleic acid and low level of linoleic acid are considered with higher oxidative stability and can be used as a natural antioxidant in food stability. All developed high oleic acid soybeans carry two alleles; GmFAD2-1A and GmFAD2-1B. However, when planted in cold soil, a possible reduction in seed germination was reported when high seed oleic acid derived from GmFAD2-1 alleles were used. Besides the soybean fatty acid desaturase (GmFAD2-1) subfamily, the GmFAD2-2 subfamily is composed of five members, including GmFAD2-2A, GmFAD2-2B, GmFAD2-2C, GmFAD2-2D, and GmFAD2-2E. Segmental duplication of GmFAD2-1A/GmFAD2-1B, GmFAD2-2A/GmFAD2-2C, GmFAD2-2A/GmFAD2-2D, and GmFAD2-2D/GmFAD2-2C have occurred about 10.65, 27.04, 100.81, and 106.55 Mya, respectively. Using TILLING-by-Sequencing+ technology, we successfully identified 12, 8, 10, 9, and 19 EMS mutants at the GmFAD2-2A, GmFAD2-2B, GmFAD2-2C, GmFAD2-2D, and GmFAD2-2E genes, respectively. Functional analyses of newly identified mutants revealed unprecedented role of the five GmFAD2-2A, GmFAD2-2B, GmFAD2-2C, GmFAD2-2D, and GmFAD2-2E members in controlling the seed oleic acid content. Most importantly, unlike GmFAD2-1 members, subcellular localization revealed that members of the GmFAD2-2 subfamily showed a cytoplasmic localization, which may suggest the presence of an alternative fatty acid desaturase pathway in soybean for converting oleic acid content without substantially altering the traditional plastidial/ER fatty acid production.

TILLING-by-Sequencing+ to Decipher Oil Biosynthesis Pathway in Soybeans: A New and Effective Platform for High-Throughput Gene Functional Analysis.

Reverse genetic approaches have been widely applied to study gene function in crop species; however, these techniques, including gel-based TILLING, present low efficiency to characterize genes in soybeans due to genome complexity, gene duplication, and the presence of multiple gene family members that share high homology in their DNA sequence. Chemical mutagenesis emerges as a genetically modified-free strategy to produce large-scale soybean mutants for economically important traits improvement. The current study uses an optimized high-throughput TILLING by target capture sequencing technology, or TILLING-by-Sequencing+ (TbyS+), coupled with universal bioinformatic tools to identify population-wide mutations in soybeans. Four ethyl methanesulfonate mutagenized populations (4032 mutant families) have been screened for the presence of induced mutations in targeted genes. The mutation types and effects have been characterized for a total of 138 soybean genes involved in soybean seed composition, disease resistance, and many other quality traits. To test the efficiency of TbyS+ in complex genomes, we used soybeans as a model with a focus on three desaturase gene families, GmSACPD, GmFAD2, and GmFAD3, that are involved in the soybean fatty acid biosynthesis pathway. We successfully isolated mutants from all the six gene family members. Unsurprisingly, most of the characterized mutants showed significant changes either in their stearic, oleic, or linolenic acids. By using TbyS+, we discovered novel sources of soybean oil traits, including high saturated and monosaturated fatty acids in addition to low polyunsaturated fatty acid contents. This technology provides an unprecedented platform for highly effective screening of polyploid mutant populations and functional gene analysis. The obtained soybean mutants from this study can be used in subsequent soybean breeding programs for improved oil composition traits.

Soybean TILLING-by-Sequencing+ reveals the role of novel GmSACPD members in unsaturated fatty acid biosynthesis while maintaining healthy nodules.

Developing soybean lines with high levels of stearic acid is a primary goal of the soybean industry. Most high-stearic-acid soybeans carry different GmSACPD-C mutated alleles. However, due to the dual role of GmSACPD-C in seeds and nodule development, all derived deleterious GmSACPD-C mutant alleles are of extremely poor agronomic value because of defective nodulation. The soybean stearoyl-acyl carrier protein desaturase (GmSACPD) gene family is composed of five members. Comparative genomics analysis indicated that SACPD genes were duplicated and derived from a common ancestor that is still present in chlorophytic algae. Synteny analysis showed the presence of segment duplications between GmSACPD-A/GmSACPD-B, and GmSACPD-C/GmSACPD-D. GmSACPD-E was not contained in any duplicated segment and may be the result of tandem duplication. We developed a TILLING by Target Capture Sequencing (Tilling-by-Sequencing+) technology, a versatile extension of the conventional TILLING by sequencing, and successfully identified 12, 14, and 18 ethyl methanesulfonate mutants at the GmSACPD-A, GmSACPD-B, and GmSACPD-D genes, respectively. Functional analysis of all identified mutants revealed an unprecedented role of GmSACPD-A, GmSACPD-B, and GmSACPD-D in unsaturated fatty acid biosynthesis without affecting nodule development and structure. This discovery will positively impact the development of high-stearic-acid lines to enhance soybean nutritional value without potential developmental tradeoffs.

Effect of dietary antioxidant supplementation (Cuminum cyminum) on bacterial susceptibility of diabetes-induced rats.

Diabetic patients are at risk of acquiring infections. Chronic low-grade inflammation is an important factor in the pathogenesis of diabetic complication. Diabetes causes generation of reactive oxygen species that increases oxidative stress, which may play a role in the development of complications as immune-deficiency and bacterial infection. The study aimed to investigate the role of a natural antioxidant, cumin, in the improvement of immune functions in diabetes. Diabetes was achieved by interperitoneal injection of streptozotocin (STZ). Bacterial infection was induced by application of Staphylococcus aureus suspension to a wound in the back of rats. The antioxidant was administered for 6 weeks. Results revealed a decrease in blood glucose levels in diabetic rats (p < 0.001), in addition to improving immune functions by decreasing total IgE approaching to the normal control level. Also, inflammatory cytokine (IL-6, IL-1ß and TNF) levels, as well as total blood count decreased in diabetic rats as compared to the control group. Thus, cumin may serve as anti-diabetic treatment and may help in attenuating diabetic complications by improving immune functions. Therefore, a medical dietary antioxidant supplementation is important to improve the immune functions in diabetes.