Simple through-plane spatial filter for 2D MRI projections.

A simple spatial filter for 2D projection MR imaging is introduced. It works in the third (unresolved) direction to eliminate uniform or slowly varying interfering background signals. A constant amplitude gradient pulse in the unresolved direction is applied at the same time as the usual phase encode gradient during 2D acquisition. The filter is demonstrated for root imaging in soil, where background soil water signals can be troublesome. The filter suppresses the soil water signal while preserving the desired signal of plant roots. Fundamental to the operation of the filter is that the roots are sparse in the image domain, meaning there are relatively few pixels with multiple roots present. The performance of the through-plane filter is demonstrated and compares favorably to more conventional in-plane spatial filtering.

Bioenergy sorghum stem growth regulation: intercalary meristem localization, development, and gene regulatory network analysis.

Bioenergy sorghum is a highly productive drought tolerant C4 grass that accumulates 80% of its harvestable biomass in approximately 4 m length stems. Stem internode growth is regulated by development, shading, and hormones that modulate cell proliferation in intercalary meristems (IMs). In this study, sorghum stem IMs were localized above the pulvinus at the base of elongating internodes using magnetic resonance imaging, microscopy, and transcriptome analysis. A change in cell morphology/organization occurred at the junction between the pulvinus and internode where LATERAL ORGAN BOUNDARIES (SbLOB), a boundary layer gene, was expressed. Inactivation of an AGCVIII kinase in DDYM (dw2) resulted in decreased SbLOB expression, disrupted IM localization, and reduced internode cell proliferation. Transcriptome analysis identified approximately 1000 genes involved in cell proliferation, hormone signaling, and other functions selectively upregulated in the IM compared with a non-meristematic stem tissue. This cohort of genes is expressed in apical dome stem tissues before localization of the IM at the base of elongating internodes. Gene regulatory network analysis identified connections between genes involved in hormone signaling and cell proliferation. The results indicate that gibberellic acid induces accumulation of growth regulatory factors (GRFs) known to interact with ANGUSTIFOLIA (SbAN3), a master regulator of cell proliferation. GRF:AN3 was predicted to induce SbARF3/ETT expression and regulate SbAN3 expression in an auxin-dependent manner. GRFs and ARFs regulate genes involved in cytokinin and brassinosteroid signaling and cell proliferation. The results provide a molecular framework for understanding how hormone signaling regulates the expression of genes involved in cell proliferation in the stem IM.

Precision current regulator for NMR electromagnets.

When using electromagnets or non-persistent superconducting magnets, the field stability can be directly proportional to the current stability. We present here a simple design for a current regulator based upon a high-precision, dc-dc fluxgate transformer. The output current and NMR frequency are stabilized by about a factor of 50, over times of order one hour. The method can be applied to essentially any current supply.

NMR of petrochemical-type chemical reactions.

A simple technique is presented for NMR of chemically reacting systems at conditions of high temperature and pressure. The method can follow reactions that are typical of refinery operations - hydrogenation, transfer dehydrogenation, methanol synthesis, and isomerization. All of the reacting materials are flame-sealed into a glass capillary. Gaseous agents such as O2 and CO are loaded into the capillary by condensation at liquid N2 temperature. H2 is provided by loading LiAlH4. The capillary holds the high pressure, up to 7 MPa, so the NMR probe can be a simple design with hot air flowing over the sample tube, up to 350 °C. Example reaction results are presented, including hydrogenation of benzene, hydrogenation/dehydrogenation of cyclohexene to benzene and cyclohexane (a disproportionation), and synthesis of methane, methanol and dimethyl ether from CO and H2. In this work we present a simple, inexpensive method with rapid temperature response for tracking chemical reactions in real-time at high temperature and high pressure.

On the influence of rotational motion on MRI velocimetry of granular flows - Theoretical predictions and comparison to experimental data.

Continuum dynamics of granular materials are known to be influenced by rotational, as well as translational, motion. Few experimental techniques exist that are sensitive to rotational motion. Here we demonstrate that MRI is sensitive to the rotation of granules and that we can quantify its effect on the MRI signal. In order to demonstrate the importance of rotational motion, we perform discrete element method (DEM) simulations of spherical particles inside a Couette shear cell. The variance of the velocity distribution was determined from DEM data using two approaches. (1) Direct averaging of the individual particle velocities. (2) Numerical simulation of the pulsed field gradient (PFG) MRI signal acquisition based on the DEM data. Rotational motion is found to be a significant effect, typically contributing up to 50% of the signal attenuation, thus amplifying the calculated velocity variance. A theoretical model was derived to relate an MRI signal to the angular velocity distribution. This model for the signal was compared to previously published experimental data as well as simulated MRI results and found to be consistent.

Development of ultrafast UTE imaging for granular systems.

Ultrashort echo time (UTE) imaging is commonly used in medical MRI to image 'solid' types of tissue; to date it has not been widely used in engineering or materials science, in part due to the relatively long imaging times required. Here we show how the acquisition time for UTE can be reduced to enable a preliminary study of a fluidized bed, a type of reactor commonly used throughout industry containing short T2∗ material and requiring fast imaging. We demonstrate UTE imaging of particles with a T2∗ of only 185µs, and an image acquisition time of only 25ms. The images are obtained using compressed sensing (CS) and by exploiting the Hermitian symmetry of k-space, to increase the resolution beyond that predicted by the Nyquist theorem. The technique is demonstrated by obtaining one- and two-dimensional images of bubbles rising in a model fluidized bed reactor.

Quantitative mapping of chemical compositions with MRI using compressed sensing.

In this work, a magnetic resonance (MR) imaging method for accelerating the acquisition time of two dimensional concentration maps of different chemical species in mixtures by the use of compressed sensing (CS) is presented. Whilst 2D-concentration maps with a high spatial resolution are prohibitively time-consuming to acquire using full k-space sampling techniques, CS enables the reconstruction of quantitative concentration maps from sub-sampled k-space data. First, the method was tested by reconstructing simulated data. Then, the CS algorithm was used to reconstruct concentration maps of binary mixtures of 1,4-dioxane and cyclooctane in different samples with a field-of-view of 22mm and a spatial resolution of 344µm×344µm. Spiral based trajectories were used as sampling schemes. For the data acquisition, eight scans with slightly different trajectories were applied resulting in a total acquisition time of about 8min. In contrast, a conventional chemical shift imaging experiment at the same resolution would require about 17h. To get quantitative results, a careful weighting of the regularisation parameter (via the L-curve approach) or contrast-enhancing Bregman iterations are applied for the reconstruction of the concentration maps. Both approaches yield relative errors of the concentration map of less than 2mol-% without any calibration prior to the measurement. The accuracy of the reconstructed concentration maps deteriorates when the reconstruction model is biased by systematic errors such as large inhomogeneities in the static magnetic field. The presented method is a powerful tool for the fast acquisition of concentration maps that can provide valuable information for the investigation of many phenomena in chemical engineering applications.

Ultrashort echo time (UTE) imaging using gradient pre-equalization and compressed sensing.

Ultrashort echo time (UTE) imaging is a well-known technique used in medical MRI, however, the implementation of the sequence remains non-trivial. This paper introduces UTE for non-medical applications and outlines a method for the implementation of UTE to enable accurate slice selection and short acquisition times. Slice selection in UTE requires fast, accurate switching of the gradient and r.f. pulses. Here a gradient "pre-equalization" technique is used to optimize the gradient switching and achieve an effective echo time of 10µs. In order to minimize the echo time, k-space is sampled radially. A compressed sensing approach is used to minimize the total acquisition time. Using the corrections for slice selection and acquisition along with novel image reconstruction techniques, UTE is shown to be a viable method to study samples of cork and rubber with a shorter signal lifetime than can typically be measured. Further, the compressed sensing image reconstruction algorithm is shown to provide accurate images of the samples with as little as 12.5% of the full k-space data set, potentially permitting real time imaging of short T2(*) materials.

Microbial and algal alginate gelation characterized by magnetic resonance.

Advanced magnetic resonance (MR) relaxation and diffusion correlation measurements and imaging provide a means to non-invasively monitor gelation for biotechnology applications. In this study, MR is used to characterize physical gelation of three alginates with distinct chemical structures; an algal alginate, which is not O-acetylated but contains poly guluronate (G) blocks, bacterial alginate from Pseudomonas aeruginosa, which does not have poly-G blocks, but is O-acetylated at the C2 and/or C3 of the mannuronate residues, and alginate from a P. aeruginosa mutant that lacks O-acetyl groups. The MR data indicate that diffusion-reaction front gelation with Ca(2+) ions generates gels of different bulk homogeneities dependent on the alginate structure. Shorter spin-spin T(2) magnetic relaxation times in the alginate gels that lack O-acetyl groups indicate stronger molecular interaction between the water and biopolymer. The data characterize gel differences over a hierarchy of scales from molecular to system size.

Magnetic resonance analysis of capillary formation reaction front dynamics in alginate gels.

The formation of heterogeneous structures in biopolymer gels is of current interest for biomedical applications and is of fundamental interest to understanding the molecular level origins of structures generated from disordered solutions by reactions. The cation-mediated physical gelation of alginate by calcium and copper is analyzed using magnetic resonance measurements of spatially resolved molecular dynamics during gel front propagation. Relaxation time and pulse-field gradient methods are applied to determine the impact of ion front motion on molecular translational dynamics. The formation of capillaries in alginate copper gels is correlated to changes in translational dynamics.