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1.
J Chem Theory Comput ; 2024 May 13.
Artigo em Inglês | MEDLINE | ID: mdl-38738688

RESUMO

Thermally activated delayed fluorescence (TADF) constitutes the process by which third-generation organic light-emitting diodes (OLEDs) are being designed and produced. Despite several years of trial-and-error attempts, mainly driven by chemical intuition about how to improve a certain aspect of the process, few studies focused on the in-depth description of its two key properties: efficiency of the T1 → S1 intersystem crossing and further S1 → S0 emission. Here, by means of a newly developed theoretical formalism, we propose a systematic rationalization of the substituent effect in a paradigmatic class of OLED compounds, based on phenothiazine-dibenzothiophene-S,S-dioxide, known as PTZ-DBTO2. Our methodology allows to discern among geometrical and electronic effects induced by the substituent, deeply understanding the relationships existing between charge transfer, spin density, geometrical deformations, and energy modulations between electronic states. By our results, we can finally elucidate, depending on the substituent, the fate of the overall TADF process, quantitatively assessing its efficiency and predicting the color emission. Moreover, the general terms by which this methodology was developed allow its application to any chromophore of interest.

2.
J Chem Theory Comput ; 19(18): 6392-6401, 2023 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-37669417

RESUMO

The use of mechanical forces at the molecular level has been shown to be an interesting tool for modulating different chemical and physical molecular properties. The so-called covalent mechanochemistry deals with the application of precise mechanical forces that induce specific changes in the structure, stability, reactivity, and other physical properties. The use of this kind of force to modulate photophysical properties and photochemical reactivity has also been studied. Nevertheless, the general problem of mechanical modulation of the energy gap between two electronic states has been addressed only with the development of simple theoretical models. Here, we develop and implement an algorithm providing the Largest energy Gap variation with Minimal mechanical Force (LGMF) that allows the determination of the optimal mechanical forces tuning the electronic energy gap, as well as to identify the maximum mechanical response of a molecular system to the application of any mechanical stimulus. The algorithm has been implemented for diverse molecular systems showing different degrees of flexibility. The phyton code of the algorithm is available in a public repository.

3.
J Org Chem ; 87(19): 12586-12595, 2022 10 07.
Artigo em Inglês | MEDLINE | ID: mdl-36166757

RESUMO

In this work, we demonstrate that the forbidden oxirane-type photoproduct (the cyclopropyl ketone photoproduct is the allowed one) of the oxa-di-π-methane photorearrangement can be obtained by mechanochemical control of the photoreactions. This control is achieved by the application of simple force pairs rationally chosen. By analyzing in detail the effect of the applied forces on this photoreaction, it comes to light that the mechanical action affects the diverse properties of the oxa-di-π-methane rearrangement, modifying all the steps of the reaction: (i) the initial ground-state conformers' distribution becomes affected; (ii) the new conformational population makes the triplet excitation process to be changed, responding to the magnitude of the applied force; (iii) the stability of the different intermediates along the triplet pathway also becomes affected, changing the dynamical behavior of the system and the reaction kinetics; and (iv) the intersystem crossing also becomes strongly affected, making the forbidden oxirane-type photoproduct to decay more efficiently to the ground state. All these changes provide a complex scenario where a detailed study of the effect of applied forces is necessary in order to predict its overall effect on the photoreactivity.


Assuntos
Cetonas , Metano , Compostos de Epóxi , Cetonas/química , Metano/química
4.
J Chem Theory Comput ; 17(9): 5429-5439, 2021 Sep 14.
Artigo em Inglês | MEDLINE | ID: mdl-34351751

RESUMO

Molecular dynamics simulations provide fundamental knowledge on the reaction mechanism of a given simulated molecular process. Nevertheless, other methodologies based on the "static" exploration of potential energy surfaces are usually employed to firmly provide the reaction coordinate directly related to the reaction mechanism, as is the case in intrinsic reaction coordinates for thermally activated reactions. Photoinduced processes in molecular systems can also be studied with these two strategies, as is the case in the triplet energy transfer process. Triplet energy transfer is a fundamental photophysical process in photochemistry and photobiology, being for instance involved in photodynamic therapy, when generating the highly reactive singlet oxygen species. Here, we study the triplet energy transfer process between porphyrin, a prototypical energy transfer donor, and different biologically relevant acceptors, including molecular oxygen, carotenoids, and rhodopsin. The results obtained by means of nanosecond time-scale molecular dynamics simulations are compared to the "static" determination of the reaction coordinate for such a thermal process, leading to the distortions determining an effective energy transfer. This knowledge was finally applied to propose porphyrin derivatives for producing the required structural modifications in order to tune their singlet-triplet energy gap, thus introducing a mechanochemical description of the mechanism.


Assuntos
Transferência de Energia , Porfirinas/química , Carotenoides/química , Química Computacional/métodos , Simulação de Dinâmica Molecular , Espécies Reativas de Oxigênio/química , Rodopsina/química
5.
J Chem Phys ; 154(22): 224106, 2021 Jun 14.
Artigo em Inglês | MEDLINE | ID: mdl-34241192

RESUMO

Controlling the thermochemistry and kinetics of chemical reactions is a central problem in chemistry. Among factors permitting this control, the substituent effect constitutes a remarkable example. Here, we develop a model accounting for the effect of a substituent on the potential energy surface of the substrate (i.e., substituted molecule). We show that substituents affect the substrate by exerting forces on the nuclei. These substituent-induced forces are able to develop a work when the molecule follows a given reaction path. By applying a simple mechanical model, it becomes possible to quantify this work, which corresponds to the energy variation due to the effect of the substituent along a specific pathway. Our model accounts for the Hammett equation as a particular case, providing the first non-empirical scale for the σ and ρ constants, which, in the developed model, are related to the forces exerted by the substituents (σ) and the reaction path length (ρ), giving their product (σ · ρ) the well-known variation on the reaction energy due to the substituent.

6.
J Int Med Res ; 49(5): 3000605211013226, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-33983051

RESUMO

OBJECTIVE: To assess the efficacy, acceptability, and tolerability of a vaginal cream based on plant extracts for treating signs and symptoms of vulvovaginitis (VV) (Zelesse cream®), either as monotherapy (non-infectious VV) or adjuvant to antimicrobial therapy (infectious VV). METHODS: This prospective, observational, multicenter study included women who attended outpatient offices for VV. The severity of signs (vaginal discharge, erythema, and edema) and symptoms (pruritus, burning, and dysuria) was assessed before and after 15±5 days of daily treatment with Zelesse cream on a 4-point scale (18-point global score). RESULTS: The study included 58 women aged 43.0±13.2 years, including 42 who were treated with Zelesse cream only and 16 who used Zelesse cream as adjuvant to antimicrobial therapy. All participants showed significantly reduced scores and absolute prevalence of individual signs and symptoms in both groups. Similarly, the median signs/symptoms decreased by 4.0 and 8.0 points in women using Zelesse only and those using Zelesse plus antimicrobial therapy, respectively. This product was well tolerated and had high acceptability. CONCLUSIONS: Zelesse cream relieves signs and symptoms of VV, either as monotherapy in non-infectious VV or as adjuvant to antimicrobial therapy in infectious VV. Future randomized, placebo-controlled trials with larger sample sizes are warranted.


Assuntos
Vulvovaginite , Administração Intravaginal , Adulto , Feminino , Humanos , Pessoa de Meia-Idade , Pomadas , Estudos Prospectivos , Resultado do Tratamento , Cremes, Espumas e Géis Vaginais , Vulvovaginite/tratamento farmacológico
7.
Metallomics ; 12(3): 363-370, 2020 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-31909407

RESUMO

Mechanical forces play a key role in essential biological processes including cell growth, division, deformation, adhesion, migration and intra-cell interactions. The effect of mechanical forces in modulating the structure and properties of metal-occupied protein binding sites has not been fully understood. Here, by employing a combination of density functional theory (DFT) calculations and polarizable continuum model (PCM) computations applied on model metal-loaded EF-hand binding sites, we shed light on the intimate mechanism of the Mg2+/Ca2+ competition impacted by the application of mechanical stimuli. Applying mechanical force with a specific directionality and magnitude may shift the balance between the competing metal cations in favor of a given contestant depending on the composition and strength of the coordinative bonds and robustness of the metal binding site. Furthermore, the calculations help to determine the range of mechanical rupture forces typical for these structures: these range from 0.4 to 1.5 nN depending on the nature of the metal and amino acid residue. This positions the strength of the Mg2+-O and Ca2+-O coordinative bonds between that of typical covalent and hydrogen bonds. The bonds between the metal cation and the charged amino acid residue rupture at higher forces (∼1.2-1.5 nN) relative to those of their metal-noncharged counterparts which dissociate at ∼0.2-0.4 nN.


Assuntos
Cálcio/metabolismo , Magnésio/metabolismo , Metaloproteínas/metabolismo , Animais , Sítios de Ligação , Cátions Bivalentes/metabolismo , Teoria da Densidade Funcional , Humanos , Metaloproteínas/química , Modelos Moleculares , Domínios Proteicos , Estresse Mecânico , Termodinâmica
8.
J Chem Theory Comput ; 15(11): 5925-5964, 2019 Nov 12.
Artigo em Inglês | MEDLINE | ID: mdl-31509407

RESUMO

In this Article we describe the OpenMolcas environment and invite the computational chemistry community to collaborate. The open-source project already includes a large number of new developments realized during the transition from the commercial MOLCAS product to the open-source platform. The paper initially describes the technical details of the new software development platform. This is followed by brief presentations of many new methods, implementations, and features of the OpenMolcas program suite. These developments include novel wave function methods such as stochastic complete active space self-consistent field, density matrix renormalization group (DMRG) methods, and hybrid multiconfigurational wave function and density functional theory models. Some of these implementations include an array of additional options and functionalities. The paper proceeds and describes developments related to explorations of potential energy surfaces. Here we present methods for the optimization of conical intersections, the simulation of adiabatic and nonadiabatic molecular dynamics, and interfaces to tools for semiclassical and quantum mechanical nuclear dynamics. Furthermore, the Article describes features unique to simulations of spectroscopic and magnetic phenomena such as the exact semiclassical description of the interaction between light and matter, various X-ray processes, magnetic circular dichroism, and properties. Finally, the paper describes a number of built-in and add-on features to support the OpenMolcas platform with postcalculation analysis and visualization, a multiscale simulation option using frozen-density embedding theory, and new electronic and muonic basis sets.

9.
J Int Med Res ; 47(6): 2626-2636, 2019 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-31088247

RESUMO

OBJECTIVE: To evaluate the acceptability, tolerability, and effects on vulvovaginitis symptoms and signs of a non-soap, herbal-based intimate solution (Zelesse®). METHODS: We conducted a prospective, observational, multicenter study including adult women with symptoms and signs of vulvovaginitis with various etiologies, including candidiasis, trichomoniasis, bacterial vaginosis, and atrophic and irritative vaginitis. The presence and intensity of signs (edema, erythema, vaginal discharge) and symptoms (pruritus) of vulvovaginitis were evaluated before and after 5-15 days of daily use of Zelesse® alone or as a coadjuvant in antimicrobial therapy. Variables following a normal distribution and categorical variables were analyzed using the Student t-test and chi-square or Fisher's exact test, respectively. RESULTS: A total 137 women were enrolled in the study; 87 (63.5%) women received concomitant antimicrobials and 50 (36.5%) used Zelesse® only. Global symptom scores and frequency of patients with vulvovaginitis signs and symptoms, and their mean intensity, decreased after treatment in both patient groups. Vaginal pH and (in the Zelesse®-only group) vaginal flora remained unaltered. The product was safe, well tolerated, and highly accepted by patients. CONCLUSIONS: Zelesse®, the non-soap herbal-based solution in this study, may represent a safe and effective option for symptomatic relief of vulvovaginitis.


Assuntos
Antibacterianos/uso terapêutico , Fitoterapia , Índice de Gravidade de Doença , Soluções/administração & dosagem , Vulvovaginite/tratamento farmacológico , Vulvovaginite/patologia , Adulto , Feminino , Seguimentos , Humanos , Higiene , Masculino , Dose Máxima Tolerável , Prognóstico , Estudos Prospectivos , Espanha/epidemiologia , Vulvovaginite/epidemiologia
10.
J Phys Chem Lett ; 10(5): 1063-1067, 2019 Mar 07.
Artigo em Inglês | MEDLINE | ID: mdl-30707586

RESUMO

We report theoretical and experimental evidence showing that photochemical reactivity of a chromophore can be modified by applying mechanical forces via molecular force probes. This mechanical action permits us to modulate main photochemical properties, such as fluorescence yield, excited-state lifetime, or photoisomerization quantum yield. The effect of molecular force probes can be rationalized in terms of simple mechanochemical models, establishing a qualitative framework for understanding the mechanical control of photoreactivity in stilbenes.

11.
Org Lett ; 20(16): 4902-4906, 2018 08 17.
Artigo em Inglês | MEDLINE | ID: mdl-30070487

RESUMO

Addition of an organolithium compound to a BN-phenanthrene with embedded B and N atoms is proposed to result in coordination of RLi to the boron atom. This coordination, supported by NMR spectroscopy and DFT calculations, increases the nucleophilicity of the system in the ß position to the N atom and is therefore a useful tool for promoting regioselective C-H functionalization of BN aromatics.

12.
J Phys Chem Lett ; 8(16): 3790-3794, 2017 Aug 17.
Artigo em Inglês | MEDLINE | ID: mdl-28749694

RESUMO

Chemiluminescence is the emission of light as a result of a nonadiabatic chemical reaction. The present work is concerned with understanding the yield of chemiluminescence, in particular how it dramatically increases upon methylation of 1,2-dioxetane. Both ground-state and nonadiabatic dynamics (including singlet excited states) of the decomposition reaction of various methyl-substituted dioxetanes have been simulated. Methyl-substitution leads to a significant increase in the dissociation time scale. The rotation around the O-C-C-O dihedral angle is slowed; thus, the molecular system stays longer in the "entropic trap" region. A simple kinetic model is proposed to explain how this leads to a higher chemiluminescence yield. These results have important implications for the design of efficient chemiluminescent systems in medical, environmental, and industrial applications.

13.
Org Lett ; 19(13): 3458-3461, 2017 07 07.
Artigo em Inglês | MEDLINE | ID: mdl-28605913

RESUMO

4a-Aza-10a-boraphenanthrene has been synthesized in only four steps from commercially available materials with a remarkable overall yield of 62%. In contrast to other BN-isosteres of phenathrene, this isomer is weakly fluorescent, which has been explained by means of computational studies that found a low energy conical intersection for the nonradiative deactivation of the excited state. Moreover, a completely regioselective functionalization of 4a-aza-10a-boraphenanthrene at C-1 by reaction with activated electrophiles has been achieved.

14.
Angew Chem Int Ed Engl ; 56(14): 3842-3846, 2017 03 27.
Artigo em Inglês | MEDLINE | ID: mdl-28251753

RESUMO

The quantum yield of a photochemical reaction is one of the most fundamental quantities in photochemistry, as it measures the efficiency of the transduction of light energy into chemical energy. Nature has evolved photoreceptors in which the reactivity of a chromophore is enhanced by its molecular environment to achieve high quantum yields. The retinal chromophore sterically constrained inside rhodopsin proteins represents an outstanding example of such a control. In a more general framework, mechanical forces acting on a molecular system can strongly modify its reactivity. Herein, we show that the exertion of tensile forces on a simplified retinal chromophore model provokes a substantial and regular increase in the trans-to-cis photoisomerization quantum yield in a counterintuitive way, as these extension forces facilitate the formation of the more compressed cis photoisomer. A rationale for the mechanochemical effect on this photoisomerization mechanism is also proposed.


Assuntos
Modelos Químicos , Teoria Quântica , Retinaldeído/química , Estrutura Molecular , Processos Fotoquímicos , Rodopsina/química , Estereoisomerismo
15.
J Chem Theory Comput ; 13(2): 727-736, 2017 Feb 14.
Artigo em Inglês | MEDLINE | ID: mdl-28080052

RESUMO

Control of absorption spectra in chromophores is a fundamental aspect of many photochemical and photophysical processes as it constitutes the first step of the global photoinduced process. Here we explore the use of mechanical forces to modulate the light absorption process. Specifically, we develop a computational formalism for determining the type of mechanical forces permitting a global tuning of the absorption spectrum. This control extends to the excitation wavelength, absorption bands overlap, and oscillator strength. The determination of these optimal forces permits us to rationally guide the design of new mechano-responsive chromophores. Pyrene has been chosen as the case study for applying these computational tools because significant absorption spectra information is available for the chromophore as well as for different strained derivatives. Additionally, pyrene presents a large flexibility, which makes it a good system to test the inclusion of force probes as the strategy to exert forces on the system.

16.
J Org Chem ; 81(15): 6292-302, 2016 08 05.
Artigo em Inglês | MEDLINE | ID: mdl-27391671

RESUMO

Bilin chromophores and bilirubin are involved in relevant biological functions such as light perception in plants and as protective agents against Alzheimer and other diseases. Despite their extensive use, a deep rationalization of the main factors controlling the thermal and photochemical properties has not been performed yet, which in turn hampers further applications of these versatile molecules. In an effort to understand those factors and allow control of the relevant properties, a combined experimental and computational study has been carried out for diverse model systems to understand the interconversion between Z and E isomers. In this study, we have demonstrated the crucial role of steric hindrance and hydrogen-bond interactions in thermal stability and the ability to control them by designing novel compounds. We also determined several photochemical properties and studied the photodynamics of two model systems in more detail, observing a fast relaxation of the excited state shorter than 2 ps in both cases. Finally, the computational study allowed us to rationalize the experimental evidence.


Assuntos
Pigmentos Biliares/química , Bilirrubina/química , Simulação por Computador , Cristalografia por Raios X , Ligação de Hidrogênio , Espectroscopia de Ressonância Magnética , Modelos Biológicos , Mutação , Processos Fotoquímicos , Software , Estereoisomerismo
17.
Phys Chem Chem Phys ; 18(9): 6742-53, 2016 Mar 07.
Artigo em Inglês | MEDLINE | ID: mdl-26876376

RESUMO

In spite of considerable interest in the design of molecular switches towards photo-controllable (bio)materials, few studies focused on the major influence of the surrounding environment on the switch photoreactivities. We present a combined experimental and computational study of a retinal-like molecular switch linked to a peptide, elucidating the effects on the photoreactivity and on the α-helix secondary structure. Temperature-dependent, femtosecond UV-vis transient absorption spectroscopy and high-level hybrid quantum mechanics/molecular mechanics methods were applied to describe the photoisomerization process and the subsequent peptide rearrangement. It was found that the conformational heterogeneity of the ground state peptide controls the excited state potential energy surface and the thermally activated population decay. Still, a reversible α-helix to α-hairpin conformational change is predicted, paving the way for a fine photocontrol of different secondary structure elements, hence (bio)molecular functions, using retinal-inspired molecular switches.


Assuntos
Biomimética , Peptídeos/química , Isomerismo , Processos Fotoquímicos , Conformação Proteica
18.
J Comput Chem ; 37(5): 506-41, 2016 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-26561362

RESUMO

In this report, we summarize and describe the recent unique updates and additions to the Molcas quantum chemistry program suite as contained in release version 8. These updates include natural and spin orbitals for studies of magnetic properties, local and linear scaling methods for the Douglas-Kroll-Hess transformation, the generalized active space concept in MCSCF methods, a combination of multiconfigurational wave functions with density functional theory in the MC-PDFT method, additional methods for computation of magnetic properties, methods for diabatization, analytical gradients of state average complete active space SCF in association with density fitting, methods for constrained fragment optimization, large-scale parallel multireference configuration interaction including analytic gradients via the interface to the Columbus package, and approximations of the CASPT2 method to be used for computations of large systems. In addition, the report includes the description of a computational machinery for nonlinear optical spectroscopy through an interface to the QM/MM package Cobramm. Further, a module to run molecular dynamics simulations is added, two surface hopping algorithms are included to enable nonadiabatic calculations, and the DQ method for diabatization is added. Finally, we report on the subject of improvements with respects to alternative file options and parallelization.


Assuntos
Algoritmos , Elétrons , Compostos Macrocíclicos/química , Timidina/química , Simulação de Dinâmica Molecular , Teoria Quântica , Software , Termodinâmica
19.
J Chem Theory Comput ; 12(2): 839-50, 2016 Feb 09.
Artigo em Inglês | MEDLINE | ID: mdl-26640959

RESUMO

While the light-induced population dynamics of different photoresponsive proteins has been investigated spectroscopically, systematic computational studies have not yet been possible due to the phenomenally high cost of suitable high level quantum chemical methods and the need of propagating hundreds, if not thousands, of nonadiabatic trajectories. Here we explore the possibility of studying the photodynamics of rhodopsins by constructing and investigating quantum mechanics/molecular mechanics (QM/MM) models featuring reduced retinal chromophores. In order to do so we use the sensory rhodopsin found in the cyanobacterium Anabaena PCC7120 (ASR) as a benchmark system. We find that the basic mechanistic features associated with the excited state dynamics of ASR QM/MM models are reproduced using models incorporating a minimal (i.e., three double-bond) chromophore. Furthermore, we show that ensembles of nonadiabatic ASR trajectories computed using the same abridged models replicate, at both the CASPT2 and CASSCF levels of theory, the trends in spectroscopy and lifetimes estimated using unabridged models and observed experimentally at room temperature. We conclude that a further expansion of these studies may lead to low-cost QM/MM rhodopsin models that may be used as effective tools in high-throughput in silico mutant screening.


Assuntos
Retinaldeído/química , Rodopsina/química , Anabaena/metabolismo , Isomerismo , Modelos Moleculares , Teoria Quântica , Temperatura
20.
J Chem Theory Comput ; 11(8): 3740-5, 2015 Aug 11.
Artigo em Inglês | MEDLINE | ID: mdl-26574456

RESUMO

Photoreactivity can be influenced by mechanical forces acting over a reacting chromophore. Nevertheless, the specific effect of the external forces in the photoreaction mechanism remains essentially unknown. Conical intersections are key structures in photochemistry, as they constitute the funnels connecting excited and ground states. These crossing points are well known to provide valuable information on molecular photoreactivity, including crucial aspects as potential photoproducts which may be predicted by just inspection of the branching plane vectors. Here, we outline a general framework for understanding the effect of mechanical forces on conical intersections and their implications on photoreactivity. Benzene S1/S0 conical intersection topology can be dramatically altered by applying less than 1 nN force, making the peaked pattern of the intersection become a sloped one, also provoking the transition state in the excited state to disappear. Both effects can be related to an increase in the photostability as the conical intersection becomes more accessible, and its topology in this case favors the recovery of the initial reactant. The results indicate that the presence of external forces acting over a chromophore have to be considered as a potential method for photochemical reactivity control.


Assuntos
Benzeno/química , Estresse Mecânico , Teoria Quântica , Termodinâmica
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