An open-source research tool to study triaxial inertial sensors for monitoring selected behaviors in sheep.

The use of automated systems for monitoring animal behavior provides information on individual animal behavior and can be used to enhance animal productivity. However, the advancement of this industry is hampered by technology costs, challenges with power supplies, limited data accessibility, and inconsistent testing approaches for confirming the detection of livestock behaviors. Development of open-source research tools similar to commercially available wearable technologies may contribute to the development of more-efficient and affordable technologies. The objective of this study was to demonstrate an open-source, microprocessor-based sensor designed to monitor and enable differentiation among selected behaviors of adult wethers. The sensor was comprised of an inexpensive espressif ESP-32-WROOM-32 microprocessor with Bluetooth communication, a generic MPU92/50 motion sensor that contains a three-axis accelerometer, three-axis magnetometer, a three-axis gyroscope, and a 5-V rechargeable lithium-ion battery. The open-source Arduino IDE software was used to program the microprocessor and to adjust the frequency of sampling, the data packet to send, and the operating conditions. For demonstration purposes, sensors were placed on six housed sheep for three 1-h increments with concurrent visual behavioral observation. Sensor readings (x-, y-, and z-axis) were summarized (mean and SD) within a minute and compared to animal behavior observations (also on a by-minute basis) using a linear mixed-effect model with animal as a random effect and behavioral classifier as a fixed effect. This analysis demonstrated the basic utility of the sensor to differentiate among animal behaviors based on sensed data (P < 0.001). Although substantial additional work is needed for algorithm development, power source testing, and network optimization, this open-source platform appears to be a promising strategy to research wearable sensors in a generalizable manner.

Impact of climate change and climate anomalies on hydrologic and biogeochemical processes in an agricultural catchment of the Chesapeake Bay watershed, USA.

Nutrient export from agricultural landscapes is a water quality concern and the cause of mitigation activities worldwide. Climate change impacts hydrology and nutrient cycling by changing soil moisture, stoichiometric nutrient ratios, and soil temperature, potentially complicating mitigation measures. This research quantifies the impact of climate change and climate anomalies on hydrology, nutrient cycling, and greenhouse gas emissions in an agricultural catchment of the Chesapeake Bay watershed. We force a calibrated model with seven downscaled and bias-corrected regional climate models and derived climate anomalies to assess their impact on hydrology and the export of nitrate (NO3-), phosphorus (P), and sediment, and emissions of nitrous oxide (N2O) and di-nitrogen (N2). Model-average (±standard deviation) results indicate that climate change, through an increase in precipitation and temperature, will result in substantial increases in winter/spring flow (10.6 ±â€¯12.3%), NO3- (17.3 ±â€¯6.4%), dissolved P (32.3 ±â€¯18.4%), total P (24.8 ±â€¯16.9%), and sediment (25.2 ±â€¯16.6%) export, and a slight increases in N2O (0.3 ±â€¯4.8%) and N2 (0.2 ±â€¯11.8%) emissions. Conversely, decreases in summer flow (-29.1 ±â€¯24.6%) and the export of dissolved P (-15.5 ±â€¯26.4%), total P (-16.3 ±â€¯20.7%), sediment (-20.7 ±â€¯18.3%), and NO3- (-29.1 ±â€¯27.8%) are driven by greater evapotranspiration from increasing summer temperatures. Decreases in N2O (-26.9 ±â€¯15.7%) and N2 (-36.6 ±â€¯22.9%) are predicted in the summer and driven by drier soils. While the changes in flow are related directly to changes in precipitation and temperature, the changes in nutrient and sediment export are, to some extent, driven by changes in agricultural management that climate change induces, such as earlier spring tillage and altered nutrient application timing and by alterations to nutrient cycling in the soil.

Environmental flows in the context of unconventional natural gas development in the Marcellus Shale.

Quantitative flow-ecology relationships are needed to evaluate how water withdrawals for unconventional natural gas development may impact aquatic ecosystems. Addressing this need, we studied current patterns of hydrologic alteration in the Marcellus Shale region and related the estimated flow alteration to fish community measures. We then used these empirical flow-ecology relationships to evaluate alternative surface water withdrawals and environmental flow rules. Reduced high-flow magnitude, dampened rates of change, and increased low-flow magnitudes were apparent regionally, but changes in many of the flow metrics likely to be sensitive to withdrawals also showed substantial regional variation. Fish community measures were significantly related to flow alteration, including declines in species richness with diminished annual runoff, winter low-flow, and summer median-flow. In addition, the relative abundance of intolerant taxa decreased with reduced winter high-flow and increased flow constancy, while fluvial specialist species decreased with reduced winter and annual flows. Stream size strongly mediated both the impact of withdrawal scenarios and the protection afforded by environmental flow standards. Under the most intense withdrawal scenario, 75% of reference headwaters and creeks (drainage areas <99 km2 ) experienced at least 78% reduction in summer flow, whereas little change was predicted for larger rivers. Moreover, the least intense withdrawal scenario still reduced summer flows by at least 21% for 50% of headwaters and creeks. The observed 90th quantile flow-ecology relationships indicate that such alteration could reduce species richness by 23% or more. Seasonally varying environmental flow standards and high fixed minimum flows protected the most streams from hydrologic alteration, but common minimum flow standards left numerous locations vulnerable to substantial flow alteration. This study clarifies how additional water demands in the region may adversely affect freshwater biological integrity. The results make clear that policies to limit or prevent water withdrawals from smaller streams can reduce the risk of ecosystem impairment.

Improved Simulation of Edaphic and Manure Phosphorus Loss in SWAT.

Watershed models such as the Soil Water Assessment Tool (SWAT) and the Agricultural Policy Environmental EXtender (APEX) are widely used to assess the fate and transport of agricultural nutrient management practices on soluble and particulate phosphorus (P) loss in runoff. Soil P-cycling routines used in SWAT2012 revision 586, however, do not simulate the short-term effects of applying a concentrated source of soluble P, such as manure, to the soil surface where it is most vulnerable to runoff. We added a new set of soil P routines to SWAT2012 revision 586 to simulate surface-applied manure at field and subwatershed scales within Mahantango Creek watershed in south-central Pennsylvania. We corroborated the new P routines and standard P routines in two versions of SWAT (conventional SWAT, and a topographically driven variation called TopoSWAT) for a total of four modeling "treatments". All modeling treatments included 5 yr of measured data under field-specific, historical management information. Short-term "wash off" processes resulting from precipitation immediately following surface application of manures were captured with the new P routine whereas the standard routines resulted in losses regardless of manure application. The new routines improved sensitivity to key factors in nutrient management (i.e., timing, rate, method, and form of P application). Only the new P routines indicated decreases in soluble P losses for dairy manure applications at 1, 5, and 10 d before a storm event. The new P routines also resulted in more variable P losses when applying manure versus commercial fertilizer and represented increases in total P losses, as compared with standard P routines, with rate increases in dairy manure application (56,000 to 84,000 L ha). The new P routines exhibited greater than 50% variation among proportions of organic, particulate, and soluble P corresponding to spreading method. In contrast, proportions of P forms under the standard P routines varied less than 20%. Results suggest similar revisions to other agroecosystem watershed models would be appropriate.

Applicability of models to predict phosphorus losses in drained fields: a review.

Most phosphorus (P) modeling studies of water quality have focused on surface runoff loses. However, a growing number of experimental studies have shown that P losses can occur in drainage water from artificially drained fields. In this review, we assess the applicability of nine models to predict this type of P loss. A model of P movement in artificially drained systems will likely need to account for the partitioning of water and P into runoff, macropore flow, and matrix flow. Within the soil profile, sorption and desorption of dissolved P and filtering of particulate P will be important. Eight models are reviewed (ADAPT, APEX, DRAINMOD, HSPF, HYDRUS, ICECREAMDB, PLEASE, and SWAT) along with P Indexes. Few of the models are designed to address P loss in drainage waters. Although the SWAT model has been used extensively for modeling P loss in runoff and includes tile drain flow, P losses are not simulated in tile drain flow. ADAPT, HSPF, and most P Indexes do not simulate flow to tiles or drains. DRAINMOD simulates drains but does not simulate P. The ICECREAMDB model from Sweden is an exception in that it is designed specifically for P losses in drainage water. This model seems to be a promising, parsimonious approach in simulating critical processes, but it needs to be tested. Field experiments using a nested, paired research design are needed to improve P models for artificially drained fields. Regardless of the model used, it is imperative that uncertainty in model predictions be assessed.

Correlation equation for predicting attachment efficiency (α) of organic matter-colloid complexes in unsaturated porous media.

Naturally occurring polymers such as organic matter have been known to inhibit aggregation and promote mobility of suspensions in soil environments by imparting steric stability. This increase in mobility can significantly reduce the water filtering capacity of soils, thus jeopardizing a primary function of the vadose zone. Improvements to classic filtration theory have been made to account for the known decrease in attachment efficiency of electrostatically stabilized particles, and more recently, of sterically stabilized particles traveling through simple and saturated porous media. In the absence of an established unsaturated transport expression, and in the absence of applicable theoretical approaches for suspensions with asymmetric and nonindifferent electrolytes, this study presents an empirical correlation to predict attachment efficiency (α) for electrosterically stabilized suspensions in unsaturated systems in the presence of nonideal electrolytes. We show that existing models fall short in estimating polymer-coated colloid deposition in unsaturated media. This deficiency is expected given that the models were developed for saturated conditions where the mechanisms controlling colloid deposition are significantly different. A new correlation is derived from unsaturated transport data and direct characterization of microspheres coated with natural organic matter over a range of pH and CaCl(2) concentrations. The improvements to existing transport models include the following: adjustment for a restricted liquid-phase in the medium, development of a quantitative term to account for unsaturated transport phenomena, and adjustments in the relative contribution of steric stability parameters based on direct measurements of the adsorbed polymer layer characteristics. Differences in model formulation for correlations designed for saturated systems and the newly proposed correlation for unsaturated systems are discussed, and the performance of the new model against a comprehensive set of experimental observations is evaluated.

A simple metric to predict stream water quality from storm runoff in an urban watershed.

The contribution of runoff from various land uses to stream channels in a watershed is often speculated and used to underpin many model predictions. However, these contributions, often based on little or no measurements in the watershed, fail to appropriately consider the influence of the hydrologic location of a particular landscape unit in relation to the stream network. A simple model was developed to predict storm runoff and the phosphorus (P) status of a perennial stream in an urban watershed in New York State using the covariance structure of runoff from different landscape units in the watershed to predict runoff in time. One hundred and twenty-seven storm events were divided into parameterization (n = 85) and forecasting (n = 42) data sets. Runoff, dissolved P (DP), and total P (TP) were measured at nine sites distributed among three land uses (high maintenance, unmaintained, wooded), three positions in the watershed (near the outlet, midwatershed, upper watershed), and in the stream at the watershed outlet. The autocorrelation among runoff and P concentrations from the watershed landscape units (n = 9) and the covariance between measurements from the landscape units and measurements from the stream were calculated and used to predict the stream response. Models, validated using leave-one-out cross-validation and a forecasting method, were able to correctly capture temporal trends in streamflow and stream P chemistry (Nash-Sutcliffe efficiencies, 0.49-0.88). The analysis suggests that the covariance structure was consistent for all models, indicating that the physical processes governing runoff and P loss from these landscape units were stationary in time and that landscapes located in hydraulically active areas have a direct hydraulic link to the stream. This methodology provides insight into the impact of various urban landscape units on stream water quantity and quality.