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1.
FEBS J ; 276(10): 2686-2700, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19459932

RESUMO

The rare 6-deoxysugar D-rhamnose is a component of bacterial cell surface glycans, including the D-rhamnose homopolymer produced by Pseudomonas aeruginosa, called A-band O polysaccharide. GDP-D-rhamnose synthesis from GDP-D-mannose is catalyzed by two enzymes. The first is a GDP-D-mannose-4,6-dehydratase (GMD). The second enzyme, RMD, reduces the GMD product (GDP-6-deoxy-D-lyxo-hexos-4-ulose) to GDP-d-rhamnose. Genes encoding GMD and RMD are present in P. aeruginosa, and genetic evidence indicates they act in A-band O-polysaccharide biosynthesis. Details of their enzyme functions have not, however, been previously elucidated. We aimed to characterize these enzymes biochemically, and to determine the structure of RMD to better understand what determines substrate specificity and catalytic activity in these enzymes. We used capillary electrophoresis and NMR analysis of reaction products to precisely define P. aeruginosa GMD and RMD functions. P. aeruginosa GMD is bifunctional, and can catalyze both GDP-d-mannose 4,6-dehydration and the subsequent reduction reaction to produce GDP-D-rhamnose. RMD catalyzes the stereospecific reduction of GDP-6-deoxy-D-lyxo-hexos-4-ulose, as predicted. Reconstitution of GDP-D-rhamnose biosynthesis in vitro revealed that the P. aeruginosa pathway may be regulated by feedback inhibition in the cell. We determined the structure of RMD from Aneurinibacillus thermoaerophilus at 1.8 A resolution. The structure of A. thermoaerophilus RMD is remarkably similar to that of P. aeruginosa GMD, which explains why P. aeruginosa GMD is also able to catalyze the RMD reaction. Comparison of the active sites and amino acid sequences suggests that a conserved amino acid side chain (Arg185 in P. aeruginosa GMD) may be crucial for orienting substrate and cofactor in GMD enzymes.


Assuntos
Açúcares de Guanosina Difosfato/biossíntese , Hidroliases/química , Hidroliases/metabolismo , Cetona Oxirredutases/química , Cetona Oxirredutases/metabolismo , Biocatálise , Eletroforese Capilar , Cinética , Modelos Moleculares , Ressonância Magnética Nuclear Biomolecular , Conformação Proteica , Pseudomonas aeruginosa/enzimologia
2.
J Biol Chem ; 276(40): 37547-55, 2001 Oct 05.
Artigo em Inglês | MEDLINE | ID: mdl-11477109

RESUMO

Prostaglandin endoperoxide H synthases-1 and -2 (PGHSs) can oxygenate 18-22 carbon polyunsaturated fatty acids, albeit with varying efficiencies. Here we report the crystal structures of eicosapentaenoic acid (EPA, 20:5 n-3) and linoleic acid (LA, 18:2 n-6) bound in the cyclooxygenase active site of Co(3+) protoporphyrin IX-reconstituted ovine PGHS-1 (Co(3+)-oPGHS-1) and compare the effects of active site substitutions on the rates of oxygenation of EPA, LA, and arachidonic acid (AA). Both EPA and LA bind in the active site with orientations similar to those seen previously with AA and dihomo-gamma-linolenic acid (DHLA). For EPA, the presence of an additional double bond (C-17/C-18) causes this substrate to bind in a "strained" conformation in which C-13 is misaligned with respect to Tyr-385, the residue that abstracts hydrogen from substrate fatty acids. Presumably, this misalignment is responsible for the low rate of EPA oxygenation. For LA, the carboxyl half binds in a more extended configuration than AA, which results in positioning C-11 next to Tyr-385. Val-349 and Ser-530, recently identified as important determinants for efficient oxygenation of DHLA by PGHS-1, play similar roles in the oxygenation of EPA and LA. Approximately 750- and 175-fold reductions in the oxygenation efficiency of EPA and LA were observed with V349A oPGHS-1, compared with a 2-fold change for AA. Val-349 contacts C-2 and C-3 of EPA and C-4 of LA orienting the carboxyl halves of these substrates so that the omega-ends are aligned properly for hydrogen abstraction. An S530T substitution decreases the V(max)/K(m) of EPA and LA by 375- and 140-fold. Ser-530 makes six contacts with EPA and four with LA involving C-8 through C-16; these interactions influence the alignment of the substrate for hydrogen abstraction. Interestingly, replacement of Phe-205 increases the volume of the cyclooxygenase site allowing EPA to be oxygenated more efficiently than with native oPGHS-1.


Assuntos
Ácido Eicosapentaenoico/metabolismo , Isoenzimas/metabolismo , Ácido Linoleico/metabolismo , Prostaglandina-Endoperóxido Sintases/metabolismo , Ácido Araquidônico/química , Ácido Araquidônico/metabolismo , Sítios de Ligação , Simulação por Computador , Cristalografia por Raios X , Ciclo-Oxigenase 1 , Ácido Eicosapentaenoico/química , Isoenzimas/química , Leucina/metabolismo , Ácido Linoleico/química , Modelos Moleculares , Mutação , Oxirredução , Fenilalanina/metabolismo , Prostaglandina-Endoperóxido Sintases/química , Conformação Proteica , Serina/metabolismo , Especificidade por Substrato , Valina/metabolismo
3.
Structure ; 9(7): 547-57, 2001 Jul 03.
Artigo em Inglês | MEDLINE | ID: mdl-11470430

RESUMO

BACKGROUND: Members of the vancomycin group of glycopeptide antibiotics have an oxidatively crosslinked heptapeptide scaffold decorated at the hydroxyl groups of 4-OH-Phegly4 or beta-OH-Tyr6 with mono- (residue 6) or disaccharides (residue 4). The disaccharide in vancomycin itself is L-vancosamine-1,2-glucose, and in chloroeremomycin it is L-4-epi-vancosamine-1,2-glucose. The sugars and their substituents play an important role in efficacy, particularly against vancomycin-resistant pathogenic enterococci. RESULTS: The glucosyltransferase, GtfB, that transfers the glucose residue from UDP-glucose to the 4-OH-Phegly4 residue of the vancomycin aglycone, initiating the glycosylation pathway in chloroeremomycin maturation, has been crystallized, and its structure has been determined by X-ray analysis at 1.8 A resolution. The enzyme has a two-domain structure, with a deep interdomain cleft identified as the likely site of UDP-glucose binding. A hydrophobic patch on the surface of the N-terminal domain is proposed to be the binding site of the aglycone substrate. Mutagenesis has revealed Asp332 as the best candidate for the general base in the glucosyltransfer reaction. CONCLUSIONS: The structure of GtfB places it in a growing group of glycosyltransferases, including Escherichia coli MurG and a beta-glucosyltransferase from T4 phage, which together form a subclass of the glycosyltransferase superfamily and give insights into the recognition of the NDP-sugar and aglycone cosubstrates. A single major interdomain linker between the N- and C- terminal domains suggests that reprogramming of sugar transfer or aglycone recognition in the antibiotic glycosyltransferases, including the glycopeptide and also the macrolide antibiotics, will be facilitated by this structural information.


Assuntos
Antibacterianos/biossíntese , Glucosiltransferases/química , Glucosiltransferases/metabolismo , Vancomicina/análogos & derivados , Sequência de Aminoácidos , Sítios de Ligação , Catálise , Cristalografia por Raios X , Glicosilação , Modelos Moleculares , Dados de Sequência Molecular , Peptídeos/química , Conformação Proteica , Homologia de Sequência de Aminoácidos , Vancomicina/biossíntese
4.
J Biol Chem ; 276(35): 32403-6, 2001 Aug 31.
Artigo em Inglês | MEDLINE | ID: mdl-11432878

RESUMO

Detergents are invaluable tools for studying membrane proteins. However, these deceptively simple, amphipathic molecules exhibit complex behavior when they self-associate and interact with other molecules. The phase behavior and assembled structures of detergents are markedly influenced not only by their unique chemical and physical properties but also by concentration, ionic conditions, and the presence of other lipids and proteins. In this minireview, we discuss the various aggregate forms detergents assume and some misconceptions about their structure. The distinction between detergents and the membrane lipids that they may (or may not) replace is emphasized in the most recent high resolution structures of membrane proteins. Detergents are clearly friends and foes, but with the knowledge of how they work, we can use the increasing variety of detergents to our advantage.


Assuntos
Membrana Celular/metabolismo , Detergentes , Membranas Intracelulares/metabolismo , Lipídeos de Membrana/metabolismo , Proteínas de Membrana/química , Proteínas de Membrana/metabolismo , Micelas , Modelos Moleculares , Conformação Proteica , Termodinâmica
6.
J Biol Chem ; 276(6): 3941-6, 2001 Feb 09.
Artigo em Inglês | MEDLINE | ID: mdl-11073956

RESUMO

The sulfolipid sulfoquinovosyldiacylglycerol is a component of plant photosynthetic membranes and represents one of the few naturally occurring sulfonic acids with detergent properties. Sulfolipid biosynthesis involves the transfer of sulfoquinovose, a 6-deoxy-6-sulfoglucose, from UDP-sulfoquinovose to diacylglycerol. The formation of the sulfonic acid precursor, UDP-sulfoquinovose, from UDP-glucose and a sulfur donor is proposed to be catalyzed by the bacterial SQDB proteins or the orthologous plant SQD1 proteins. To investigate the underlying enzymatic mechanism and to elucidate the de novo synthesis of sulfonic acids in biological systems, we developed an in vitro assay for the recombinant SQD1 protein from Arabidopsis thaliana. Among different possible sulfur donors tested, sulfite led to the formation of UDP-sulfoquinovose in the presence of UDP-glucose and SQD1. An SQD1 T145A mutant showed greatly reduced activity. The UDP-sulfoquinovose formed in this assay was identified by co-chromatography with standards and served as substrate for the sulfolipid synthase associated with spinach chloroplast membranes. Approximate K(m) values of 150 microm for UDP-glucose and 10 microm for sulfite were established for SQD1. Based on our results, we propose that SQD1 catalyzes the formation of UDP-sulfoquinovose from UDP-glucose and sulfite, derived from the sulfate reduction pathway in the chloroplast.


Assuntos
Arabidopsis/metabolismo , Glicolipídeos/metabolismo , Sulfitos/metabolismo , Uridina Difosfato Glucose/metabolismo , Sequência de Bases , Primers do DNA , Eletroforese em Gel de Poliacrilamida , Glicolipídeos/genética , Mutação , Uridina Difosfato Glucose/análogos & derivados
7.
J Biol Chem ; 276(13): 10358-65, 2001 Mar 30.
Artigo em Inglês | MEDLINE | ID: mdl-11121413

RESUMO

Prostaglandin endoperoxide H synthases-1 and -2 (PGHSs) catalyze the committed step in prostaglandin biosynthesis. Both isozymes can oxygenate a variety of related polyunsaturated fatty acids. We report here the x-ray crystal structure of dihomo-gamma-linolenic acid (DHLA) in the cyclooxygenase site of PGHS-1 and the effects of active site substitutions on the oxygenation of DHLA, and we compare these results to those obtained previously with arachidonic acid (AA). DHLA is bound within the cyclooxygenase site in the same overall L-shaped conformation as AA. C-1 and C-11 through C-20 are in the same positions for both substrates, but the positions of C-2 through C-10 differ by up to 1.74 A. In general, substitutions of active site residues caused parallel changes in the oxygenation of both AA and DHLA. Two significant exceptions were Val-349 and Ser-530. A V349A substitution caused an 800-fold decrease in the V(max)/K(m) for DHLA but less than a 2-fold change with AA; kinetic evidence indicates that C-13 of DHLA is improperly positioned with respect to Tyr-385 in the V349A mutant thereby preventing efficient hydrogen abstraction. Val-349 contacts C-5 of DHLA and appears to serve as a structural bumper positioning the carboxyl half of DHLA, which, in turn, positions properly the omega-half of this substrate. A V349A substitution in PGHS-2 has similar, minor effects on the rates of oxygenation of AA and DHLA. Thus, Val-349 is a major determinant of substrate specificity for PGHS-1 but not for PGHS-2. Ser-530 also influences the substrate specificity of PGHS-1; an S530T substitution causes 40- and 750-fold decreases in oxygenation efficiencies for AA and DHLA, respectively.


Assuntos
Ácido 8,11,14-Eicosatrienoico/química , Ácido 8,11,14-Eicosatrienoico/genética , Prostaglandina-Endoperóxido Sintases/química , Prostaglandina-Endoperóxido Sintases/genética , Ácido 8,11,14-Eicosatrienoico/metabolismo , Animais , Ácido Araquidônico/química , Ácido Araquidônico/metabolismo , Sítios de Ligação , Western Blotting , Células COS , Cristalografia por Raios X , Análise Mutacional de DNA , Ácidos Graxos/metabolismo , Cinética , Modelos Moleculares , Mutação , Oxigênio/metabolismo , Peroxidase/metabolismo , Prostaglandina-Endoperóxido Sintases/metabolismo , Ligação Proteica , Conformação Proteica , Serina/química , Especificidade por Substrato , Transfecção , Valina/química
8.
J Biol Chem ; 276(13): 10347-57, 2001 Mar 30.
Artigo em Inglês | MEDLINE | ID: mdl-11121412

RESUMO

Prostaglandin endoperoxide H synthases (PGHSs) catalyze the committed step in the biosynthesis of prostaglandins and thromboxane, the conversion of arachidonic acid, two molecules of O(2), and two electrons to prostaglandin endoperoxide H(2) (PGH(2)). Formation of PGH(2) involves an initial oxygenation of arachidonate to yield PGG(2) catalyzed by the cyclooxygenase activity of the enzyme and then a reduction of the 15-hydroperoxyl group of PGG(2) to form PGH(2) catalyzed by the peroxidase activity. The cyclooxygenase active site is a hydrophobic channel that protrudes from the membrane binding domain into the core of the globular domain of PGHS. In the crystal structure of Co(3+)-heme ovine PGHS-1 complexed with arachidonic acid, 19 cyclooxygenase active site residues are predicted to make a total of 50 contacts with the substrate (Malkowski, M. G, Ginell, S., Smith, W. L., and Garavito, R. M. (2000) Science 289, 1933-1937); two of these are hydrophilic, and 48 involve hydrophobic interactions. We performed mutational analyses to determine the roles of 14 of these residues and 4 other closely neighboring residues in arachidonate binding and oxygenation. Mutants were analyzed for peroxidase and cyclooxygenase activity, and the products formed by various mutants were characterized. Overall, the results indicate that cyclooxygenase active site residues of PGHS-1 fall into five functional categories as follows: (a) residues directly involved in hydrogen abstraction from C-13 of arachidonate (Tyr-385); (b) residues essential for positioning C-13 of arachidonate for hydrogen abstraction (Gly-533 and Tyr-348); (c) residues critical for high affinity arachidonate binding (Arg-120); (d) residues critical for positioning arachidonate in a conformation so that when hydrogen abstraction does occur the molecule is optimally arranged to yield PGG(2) versus monohydroperoxy acid products (Val-349, Trp-387, and Leu-534); and (e) all other active site residues, which individually make less but measurable contributions to optimal catalytic efficiency.


Assuntos
Ácido Araquidônico/metabolismo , Isoenzimas/química , Isoenzimas/fisiologia , Oxigênio/metabolismo , Prostaglandina-Endoperóxido Sintases/química , Prostaglandina-Endoperóxido Sintases/fisiologia , Aminoácidos/química , Animais , Sítios de Ligação , Western Blotting , Células COS , Catálise , Membrana Celular/metabolismo , Cromatografia Líquida de Alta Pressão , Cromatografia em Camada Fina , Ciclo-Oxigenase 1 , Análise Mutacional de DNA , Relação Dose-Resposta a Droga , Ésteres/metabolismo , Hidrogênio , Cinética , Leucina/química , Metionina/química , Modelos Biológicos , Modelos Químicos , Peroxidase/metabolismo , Fenilalanina/química , Prostaglandina-Endoperóxido Sintases/metabolismo , Ligação Proteica , Conformação Proteica , Estrutura Terciária de Proteína , Ovinos , Fatores de Tempo , Transfecção , Triptofano/química
9.
Science ; 289(5486): 1933-7, 2000 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-10988074

RESUMO

Prostaglandin H synthase-1 and -2 (PGHS-1 and -2) catalyze the committed step in prostaglandin synthesis and are targets for nonsteroidal anti-inflammatory drugs (NSAIDs) like aspirin. We have determined the structure of PGHS-1 at 3 angstrom resolution with arachidonic acid (AA) bound in a chemically productive conformation. The fatty acid adopts an extended L-shaped conformation that positions the 13proS hydrogen of AA for abstraction by tyrosine-385, the likely radical donor. A space also exists for oxygen addition on the antarafacial surface of the carbon in the 11-position (C-11). While this conformation allows endoperoxide formation between C-11 and C-9, it also implies that a subsequent conformational rearrangement must occur to allow formation of the C-8/C-12 bond and to position C-15 for attack by a second molecule of oxygen.


Assuntos
Ácido Araquidônico/química , Isoenzimas/química , Prostaglandina-Endoperóxido Sintases/química , Ácido Araquidônico/metabolismo , Cristalografia por Raios X , Ciclo-Oxigenase 1 , Isoenzimas/metabolismo , Modelos Moleculares , Prostaglandina-Endoperóxido Sintases/metabolismo , Ligação Proteica , Conformação Proteica
10.
Annu Rev Biochem ; 69: 145-82, 2000.
Artigo em Inglês | MEDLINE | ID: mdl-10966456

RESUMO

The prostaglandin endoperoxide H synthases-1 and 2 (PGHS-1 and PGHS-2; also cyclooxygenases-1 and 2, COX-1 and COX-2) catalyze the committed step in prostaglandin synthesis. PGHS-1 and 2 are of particular interest because they are the major targets of nonsteroidal anti-inflammatory drugs (NSAIDs) including aspirin, ibuprofen, and the new COX-2 inhibitors. Inhibition of the PGHSs with NSAIDs acutely reduces inflammation, pain, and fever, and long-term use of these drugs reduces fatal thrombotic events, as well as the development of colon cancer and Alzheimer's disease. In this review, we examine how the structures of these enzymes relate mechanistically to cyclooxygenase and peroxidase catalysis, and how differences in the structure of PGHS-2 confer on this isozyme differential sensitivity to COX-2 inhibitors. We further examine the evidence for independent signaling by PGHS-1 and PGHS-2, and the complex mechanisms for regulation of PGHS-2 gene expression.


Assuntos
Prostaglandina-Endoperóxido Sintases/química , Prostaglandina-Endoperóxido Sintases/metabolismo , Animais , Anti-Inflamatórios não Esteroides/farmacologia , Catálise , Inibidores de Ciclo-Oxigenase/farmacologia , Regulação Enzimológica da Expressão Gênica , Humanos , Cinética , Modelos Moleculares , Peroxidases/química , Peroxidases/genética , Peroxidases/metabolismo , Prostaglandina-Endoperóxido Sintases/genética
12.
Arch Biochem Biophys ; 380(1): 39-45, 2000 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-10900130

RESUMO

We have developed a protocol to purify apo-ovine (o) prostaglandin endoperoxide H(2) synthase-1 (PGHS-1) to homogeneity from ram seminal vesicles. The resulting apo enzyme can then be reconstituted with Co(3+)-protoporphyrin IX instead of Fe(3+)-protoporphyrin IX to produce a native-like, but functionally inert, enzyme suitable for the production of enzyme:fatty acid substrate complexes for biophysical characterization. Co(3+)-protoporphyrin IX reconstituted oPGHS-1 (Co(3+)-oPGHS-1) displays a Soret band at 426 nm that shifts to 406 nm upon reduction. This behavior is similar to that of cobalt-reconstituted horseradish peroxidase and myoglobin and suggests, along with resonance Raman spectroscopy, that the Co(3+)-protoporphyrin IX group is one in a six-coordinate, cobalt(III) state. However, Co(3+)-oPGHS-1 does not display cyclooxygenase or peroxidase activity, nor does the enzyme produce prostaglandin products when incubated with [1-(14)C]arachidonic acid. The cocrystallization of Co(3+)-oPGHS-1 and the substrate arachidonic acid (AA) has been achieved using sodium citrate as the precipitant in the presence of the nonionic detergent N-octyl-beta-d-glucopyranoside. Crystals are hexagonal, belonging to the space group P6(5)22, with cell dimensions of a = b = 181.69 A and c = 103.74 A, and a monomer in the asymmetric unit. GC-MS analysis of dissolved crystals indicates that unoxidized AA is bound within the crystals.


Assuntos
Ácidos Graxos/metabolismo , Isoenzimas/química , Isoenzimas/isolamento & purificação , Prostaglandina-Endoperóxido Sintases/química , Prostaglandina-Endoperóxido Sintases/isolamento & purificação , Animais , Apoenzimas , Cobalto/metabolismo , Cristalização , Ciclo-Oxigenase 1 , Eletroforese em Gel de Poliacrilamida , Cromatografia Gasosa-Espectrometria de Massas , Ferro/metabolismo , Isoenzimas/metabolismo , Masculino , Microssomos/enzimologia , Peroxidase/metabolismo , Prostaglandina-Endoperóxido Sintases/metabolismo , Ligação Proteica , Protoporfirinas/metabolismo , Glândulas Seminais/enzimologia , Ovinos , Análise Espectral Raman
13.
Biochemistry ; 39(22): 6616-24, 2000 Jun 06.
Artigo em Inglês | MEDLINE | ID: mdl-10828979

RESUMO

Prostaglandin endoperoxide H synthases-1 and -2 (PGHS-1 and -2) convert arachidonic acid to prostaglandin H(2) (PGH(2)), the committed step in prostaglandin and thromboxane formation. Interaction of peroxides with the heme sites in PGHSs generates a tyrosyl radical that catalyzes subsequent cyclooxygenase chemistry. To study the peroxidase reaction of ovine oPGHS-1, we combined spectroscopic and directed mutagenesis data with X-ray crystallographic refinement of the heme site. Optical and Raman spectroscopy of oxidized oPGHS-1 indicate that its heme iron (Fe(3+)) exists exclusively as a high-spin, six-coordinate species in the holoenzyme and in heme-reconstituted apoenzyme. The sixth ligand is most likely water. The cyanide complex of oxidized oPGHS-1 has a six-coordinate, low-spin ferric iron with a v[Fe-CN] frequency at 445 cm(-)(1); a monotonic sensitivity to cyanide isotopomers that indicates the Fe-CN adduct has a linear geometry. The ferrous iron in reduced oPGHS-1 adopts a high-spin, five-coordinate state that is converted to a six-coordinate, low-spin geometry by CO. The low-frequency Raman spectrum of reduced oPGHS-1 reveals two v[Fe-His] frequencies at 206 and 222 cm(-)(1). These vibrations, which disappear upon addition of CO, are consistent with a neutral histidine (His388) as the proximal heme ligand. The refined crystal structure shows that there is a water molecule located between His388 and Tyr504 that can hydrogen bond to both residues. However, substitution of Tyr504 with alanine yields a mutant having 46% of the peroxidase activity of native oPGHS-1, establishing that bonding of Tyr504 to this water is not critical for catalysis. Collectively, our results show that the proximal histidine ligand in oPGHS-1 is electrostatically neutral. Thus, in contrast to most other peroxidases, a strongly basic proximal ligand is not necessary for peroxidase catalysis by oPGHS-1.


Assuntos
Heme/química , Histidina/química , Isoenzimas/metabolismo , Peroxidases/metabolismo , Prostaglandina-Endoperóxido Sintases/metabolismo , Animais , Cristalografia por Raios X , Ciclo-Oxigenase 1 , Ligação de Hidrogênio , Ferro/química , Isoenzimas/química , Modelos Moleculares , Mutagênese Sítio-Dirigida , Prostaglandina-Endoperóxido Sintases/química , Ovinos , Espectrofotometria , Análise Espectral Raman , Água/química
14.
Biochim Biophys Acta ; 1441(2-3): 278-87, 1999 Nov 23.
Artigo em Inglês | MEDLINE | ID: mdl-10570255

RESUMO

Despite the marked differences in their physiological roles, the structures and catalytic functions of the cyclooxygenase isozymes COX-1 and -2 are virtually identical. Nevertheless, a handful of amino acid substitutions give rise to subtle differences in ligand binding between the two isoforms. These 'small' alterations of isozyme structure are sufficient to allow the design of new, isoform-selective drugs.


Assuntos
Isoenzimas/química , Isoenzimas/metabolismo , Prostaglandina-Endoperóxido Sintases/química , Prostaglandina-Endoperóxido Sintases/metabolismo , Animais , Anti-Inflamatórios não Esteroides/farmacologia , Sítios de Ligação , Ciclo-Oxigenase 1 , Ciclo-Oxigenase 2 , Inibidores de Ciclo-Oxigenase 2 , Inibidores de Ciclo-Oxigenase/farmacologia , Dimerização , Ácidos Graxos/metabolismo , Humanos , Proteínas de Membrana , Modelos Moleculares , Estrutura Molecular
15.
J Biol Chem ; 274(46): 32936-42, 1999 Nov 12.
Artigo em Inglês | MEDLINE | ID: mdl-10551860

RESUMO

Prostaglandin endoperoxide H synthases 1 and 2 (PGHS-1 and -2) are the major targets of nonsteroidal anti-inflammatory drugs. Both isozymes are integral membrane proteins but lack transmembrane domains. X-ray crystallographic studies have led to the hypothesis that PGHS-1 and -2 associate with only one face of the membrane bilayer through a novel, monotopic membrane binding domain (MBD) that is comprised of four short, consecutive, amphipathic alpha-helices (helices A-D) that include residues 74-122 in ovine PGHS-1 (oPGHS-1) and residues 59-108 in human PGHS-2 (hPGHS-2). Previous biochemical studies from our laboratory showed that the MBD of oPGHS-1 lies somewhere between amino acids 25 and 166. In studies reported here, membrane-associated forms of oPGHS-1 and hPGHS-2 were labeled using the hydrophobic, photoactivable reagent 3-trifluoro-3-(m-[(125)I]iodophenyl)diazirine, isolated, and cleaved with AspN and/or GluC, and the photolabeled peptides were sequenced. The results establish that the MBDs of oPGHS-1 and hPGHS-2 reside within residues 74-140 and 59-111, respectively, and thus provide direct provide biochemical support for the hypothesis that PGHS-1 and -2 do associate with membranes through a monotopic MBD. We also prepared HelA, HelB, and HelC mutants of oPGHS-1, in which, for each helix, three or four hydrophobic residues expected to protrude into the membrane were replaced with small, neutral residues. When expressed in COS-1 cells, HelA and HelC mutants exhibited little or no catalytic activity and were present, at least in part, as misfolded aggregates. The HelB mutant retained about 20% of the cyclooxygenase activity of native oPGHS-1 and partitioned in subcellular fractions like native oPGHS-1; however, the HelB mutant exhibited an extra site of N-glycosylation at Asn(104). When this glycosylation site was eliminated (HelB/N104Q mutation), the mutant lacked cyclooxygenase activity. Thus, our mutational analyses indicate that the amphipathic character of each helix is important for the assembly and folding of oPGHS-1 to a cyclooxygenase active form.


Assuntos
Isoenzimas/química , Proteínas de Membrana/química , Prostaglandina-Endoperóxido Sintases/química , Sequência de Aminoácidos , Animais , Azirinas , Sítios de Ligação , Células COS , Ciclo-Oxigenase 1 , Ciclo-Oxigenase 2 , Glicosilação , Humanos , Modelos Moleculares , Dados de Sequência Molecular , Fragmentos de Peptídeos/química , Peroxidases/genética , Peroxidases/metabolismo , Marcadores de Fotoafinidade , Dobramento de Proteína , Estrutura Secundária de Proteína , Ovinos , Solubilidade , Transfecção
16.
Proc Natl Acad Sci U S A ; 96(23): 13097-102, 1999 Nov 09.
Artigo em Inglês | MEDLINE | ID: mdl-10557279

RESUMO

The SQD1 enzyme is believed to be involved in the biosynthesis of the sulfoquinovosyl headgroup of plant sulfolipids, catalyzing the transfer of SO(3)(-) to UDP-glucose. We have determined the structure of the complex of SQD1 from Arabidopsis thaliana with NAD(+) and the putative substrate UDP-glucose at 1.6-A resolution. Both bound ligands are completely buried within the binding cleft, along with an internal solvent cavity which is the likely binding site for the, as yet, unidentified sulfur-donor substrate. SQD1 is a member of the short-chain dehydrogenase/reductase (SDR) family of enzymes, and its structure shows a conservation of the SDR catalytic residues. Among several highly conserved catalytic residues, Thr-145 forms unusually short hydrogen bonds with both susceptible hydroxyls of UDP-glucose. A His side chain may also be catalytically important in the sulfonation.


Assuntos
Proteínas de Arabidopsis , Enzimas/química , Proteínas de Plantas/química , Plantas/metabolismo , Uridina Difosfato Glucose/análogos & derivados , Sítios de Ligação , Cristalografia por Raios X , Enzimas/metabolismo , Modelos Moleculares , NAD/metabolismo , NADP/metabolismo , Proteínas de Plantas/metabolismo , Plantas/enzimologia , Conformação Proteica , Uridina Difosfato Glucose/biossíntese , Uridina Difosfato Glucose/metabolismo
17.
J Biol Chem ; 274(24): 17109-14, 1999 Jun 11.
Artigo em Inglês | MEDLINE | ID: mdl-10358065

RESUMO

Arg-120 is located near the mouth of the hydrophobic channel that forms the cyclooxygenase active site of prostaglandin endoperoxide H synthases (PGHSs)-1 and -2. Replacement of Arg-120 of ovine PGHS-1 with a glutamine increases the apparent Km of PGHS-1 for arachidonate by 1,000-fold (Bhattacharyya, D. K., Lecomte, M., Rieke, C. J., Garavito, R. M., and Smith, W. L. (1996) J. Biol. Chem. 271, 2179-2184). This and other evidence indicate that the guanido group of Arg-120 forms an ionic bond with the carboxylate group of arachidonate and that this interaction is an important contributor to the overall strength of arachidonate binding to PGHS-1. In contrast, we report here that R120Q human PGHS-2 (hPGHS-2) and native hPGHS-2 have very similar kinetic properties, but R120L hPGHS-2 catalyzes the oxygenation of arachidonate inefficiently. Our data indicate that the guanido group of Arg-120 of hPGHS-2 interacts with arachidonate through a hydrogen bond rather than an ionic bond and that this interaction is much less important for arachidonate binding to PGHS-2 than to PGHS-1. The Km values of PGHS-1 and -2 for arachidonate are the same, and all but one of the core residues of the active sites of the two isozymes are identical. Thus, the results of our studies of Arg-120 of PGHS-1 and -2 imply that interactions involved in the binding of arachidonate to PGHS-1 and -2 are quite different and that residues within the hydrophobic cyclooxygenase channel must contribute more significantly to arachidonate binding to PGHS-2 than to PGHS-1. As observed previously with R120Q PGHS-1, flurbiprofen was an ineffective inhibitor of R120Q hPGHS-2. PGHS-2-specific inhibitors including NS398, DuP-697, and SC58125 had IC50 values for the R120Q mutant that were up to 1,000-fold less than those observed for native hPGHS-2; thus, the positively charged guanido group of Arg-120 interferes with the binding of these compounds. NS398 did not cause time-dependent inhibition of R120Q hPGHS-2, whereas DuP-697 and SC58125 were time-dependent inhibitors. Thus, Arg-120 is important for the time-dependent inhibition of hPGHS-2 by NS398 but not by DuP-697 or SC58125.


Assuntos
Arginina , Domínio Catalítico , Inibidores de Ciclo-Oxigenase/metabolismo , Ácidos Graxos/metabolismo , Isoenzimas/metabolismo , Prostaglandina-Endoperóxido Sintases/metabolismo , Ácido Araquidônico/metabolismo , Ciclo-Oxigenase 2 , Inibidores de Ciclo-Oxigenase 2 , Humanos , Hidroxiácidos/química , Isoenzimas/genética , Proteínas de Membrana , Modelos Moleculares , Mutagênese Sítio-Dirigida , Prostaglandina-Endoperóxido Sintases/genética , Prostaglandinas/química , Proteínas Recombinantes/metabolismo , Especificidade por Substrato , Transfecção
18.
Arch Biochem Biophys ; 362(2): 203-10, 1999 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-9989928

RESUMO

The Type I isozyme of mammalian hexokinase has evolved by a gene duplication-fusion mechanism, with resulting internal duplication of sequence and ligand binding sites. However, 1:1 binding stoichiometry indicates that only one of these is available for binding the product inhibitor, Glc-6-P; the location of that site, in the N- or C-terminal half, remains under debate. Recent structural studies (Aleshin et al., Structure 6, 39-50, 1998; Mulichak et al., Nature Struct. Biol. 5, 555-560, 1998) implicated Asp 84 or its analog in the C-terminal half, Asp 532, in binding of Glc-6-P. Zeng et al. (Biochemistry 35, 13157-13164, 1996) demonstrated that mutation of Asp 532 to Lys or Glu did not affect inhibition by the Glc-6-P analog, 1,5-anhydroglucitol-6-P. These same mutations, as well as mutation to Ala, at the Asp 84 position are now shown to result in increased Ki for 1,5-anhydroglucitol-6-P. The ability of Pi to antagonize inhibition by the Glc-6-P analog is severely diminished or abolished by these mutations, suggesting that antagonism is dependent on precise positioning of the inhibitory hexose 6-phosphate. The structure of the enzyme complexed with Glc and Pi has been determined, and shows that Pi occupies the same site as the 6-phosphate group in the complex with Glc-6-P. Thus, antagonism between these ligands results from competition for a common anion binding site in the N-terminal half.


Assuntos
Glucose-6-Fosfato/metabolismo , Hexoquinase/metabolismo , Mutagênese Sítio-Dirigida , Trifosfato de Adenosina/farmacologia , Regulação Alostérica , Sítio Alostérico , Animais , Ligação Competitiva , Células CHO , Cricetinae , Cristalização , Dimerização , Glucose/metabolismo , Glucose-6-Fosfato/análogos & derivados , Hexoquinase/química , Hexoquinase/genética , Cinética , Modelos Moleculares , Mutação/genética , Fosfatos/metabolismo , Conformação Proteica , Ratos , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Transfecção
19.
Nat Struct Biol ; 5(7): 555-60, 1998 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-9665168

RESUMO

We have determined the structures of the glucose-6-phosphate (G6P)-inhibitable 100,000 Mr Type I hexokinase from rat and the G6P-sensitive 50,000 Mr hexokinase from Schistosoma mansoni at a resolution of 2.8 and 2.6 A respectively. The structures define the glucose and G6P binding sites in these enzymes, suggest the mechanisms of intradomain G6P inhibition and activity loss in the Type I hexokinase N-terminal half, and reveal the structure of the membrane targeting motif that integrates the Type I hexokinase into the outer mitochondrial membrane.


Assuntos
Hexoquinase/química , Conformação Proteica , Animais , Sítios de Ligação , Cristalografia por Raios X , Inibidores Enzimáticos/química , Glucose/química , Glucose-6-Fosfato/química , Glucose-6-Fosfato/metabolismo , Hexoquinase/antagonistas & inibidores , Hexoquinase/metabolismo , Modelos Moleculares , Ratos , Schistosoma mansoni/enzimologia
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