Reaffirming the Loma Mountains National Park in Sierra Leone as a critical site for the conservation of West African chimpanzee (Pan troglodytes verus).

The population of West African chimpanzees (Pan troglodytes verus) is declining rapidly mostly due to the impact of human activities and habitat loss. Sierra Leone harbors the third largest population of this subspecies, recently reclassified as Critically Endangered in the 2016 IUCN Red List. Population monitoring provides crucial data for planning and evaluating conservation and management policies. Therefore, to assess the status of the population size inhabiting the Loma Mountains National Park (LMNP) in Sierra Leone, we performed a nest count survey and estimated chimpanzee density and abundance using distance sampling. In total, 34 × 2-km-line transects were surveyed, with transects being systematically distributed across the LMNP area (288.5 km2 ). Concurrently, we compiled environmental data, which were used to model nest distribution and infer the most relevant environmental and anthropogenic drivers of the observed nest abundances. We encountered 10.03 nests/km and estimated a density of 3.47 ± standard error (SE) 0.92 individuals/km2 (i.e., 1002 ± SE 266 individuals in total). Compared to the figures obtained from a systematic literature review, our results suggest that the density and abundance of chimpanzees in the LMNP is among the highest across Africa. Contrary to expectation, no specific anthropogenic features predicted nest distribution and abundance. However, the nest distribution model indicated preference for elevated and steep areas covered by closed evergreen forest, which could be an indication of human avoidance. Based on these results, we highlight the value of LMNP for the conservation of the chimpanzees in Sierra Leone and the urgent necessity of guarantying long-term funding for this park's management to ensure the survival of this critically endangered subspecies in West Africa.

Mobonda Community Conservation Project: Chimpanzees, oysters, and community engagement in Sierra Leone.

Sierra Leone constitutes the western boundary to the West Africa Upper Guinea Rainforest, one of 35 global biodiversity hotspots. The country is home to the third-largest western chimpanzee (Pan troglodytes verus) population, a subspecies upgraded to Critically Endangered on the 2016 IUCN Red List. The main threats facing chimpanzees in Sierra Leone are habitat loss and increasing interactions with humans. The Mobonda Community Conservation Project (MCCP) is a component of Tacugama Chimpanzee Sanctuary's Community Outreach Program and Kids Environmental Education Program. The aim of MCCP is to promote community-based forest management in combination with wildlife conservation through carefully designed programs that benefit communities, wildlife, and ecologically significant habitats. MCCP also aims to promote self-sustained and integrated community landscape conservation, to facilitate policy discussions to strengthen wildlife laws, and to build the capacity of the Government to implement community-based wildlife and forestry protection projects. Since Tacugama began collecting data in Moyamba District in June 2015, the project has evolved into an assembly of components. MCCP currently works with five communities, running programs including environmental education, ecological research, biomonitoring including wildlife law enforcement, habitat rehabilitation through reforestation of identified wildlife corridors, improved sustainable livelihoods, and ecotourism initiatives. These programs contributed to a reduction in the threats facing wildlife in the area; the project has seen stable chimpanzee numbers where decrements to chimpanzee populations continue to be experienced elsewhere. Other MCCP outcomes include boosted sustainable agricultural production and higher oyster yields while decreasing the negative impact on the mangrove ecosystem allowing it to recover and support an array of important fauna and flora.

Factors influencing wild chimpanzee (Pan troglodytes verus) relative abundance in an agriculture-swamp matrix outside protected areas.

Human population growth and anthropogenic activities are exacerbating pressures on biodiversity globally. Land conversion is aggravating habitat fragmentation and non-human primates are increasingly compelled to live in forest-agricultural mosaics. In Sierra Leone, more than half of the wild chimpanzee population (Pan troglodytes verus) occurs outside protected areas and competes for resources with farmers. Our study area, in the Moyamba district in south-western Sierra Leone, is practically devoid of forest and is dominated by cultivated and fallow fields, swamps and mangroves. In this region, traditional slash-and-burn agriculture modifies annually the landscape, sparing swamps and mangroves and semi-domesticated oil palms (Elaeis guineensis). This study aimed to explore ecological and anthropogenic factors influencing chimpanzee relative abundance across this highly degraded and human-impacted landscape. Between 2015 and 2016, we deployed 24 camera traps systematically across 27 1.25x1.25 km grid cells. Cameras were operational over a period of 8 months. We used binomial iCAR models to examine to what extent anthropogenic (roads, settlements, abandoned settlements and human presence) and habitat variables (swamps, farmland and mangroves) shape chimpanzee relative abundance. The best model explained 43.16% of the variation with distance to roads and swamps emerging as the best predictors of chimpanzee relative abundance. Our results suggest that chimpanzees avoid roads and prefer to maintain proximity to swamps. There was no significant effect of settlements, abandoned settlements, mangroves or human presence. It appears that chimpanzees do not avoid areas frequented by people; although, our findings suggest temporal avoidance between the two species. We highlight the importance of studying chimpanzee populations living in anthropogenic habitats like agricultural-swamp matrixes to better understand factors influencing their distribution and inform conservation planning outside protected areas.

Bushmeat trade consequences predict higher anxiety, restraint, and dominance in chimpanzees.

More data are needed for a better understanding of the long-term influence of wider and combined stressful events in chimpanzee personality development. We evaluated the effects of bushmeat trade outcomes on the personality development in 84 African sanctuary chimpanzees. The chimpanzees presented different backgrounds regarding maternal care, social exposure, and abuse. We evaluated personality traits in chimpanzees using the Cattell 16PF personality questionnaire, the first application of this questionnaire in this species. We found that chimpanzees were rated as higher in anxiety after long social deprivation during infancy and juvenility, and if high human exposure was experienced. Mother-reared chimpanzees were rated as lower in restraint than hand-reared chimpanzees. Finally, mother-reared chimpanzees were rated as less dominant than hand-reared chimpanzees and rated higher when they had experienced severe mistreatment. Results suggest a wide range of possible stressful events could be potentially shaping rescued chimpanzees' personality and demonstrating the detrimental outcomes and consequences of the bushmeat and pet trade.

The saliva microbiome of Pan and Homo.

BACKGROUND: It is increasingly recognized that the bacteria that live in and on the human body (the microbiome) can play an important role in health and disease. The composition of the microbiome is potentially influenced by both internal factors (such as phylogeny and host physiology) and external factors (such as diet and local environment), and interspecific comparisons can aid in understanding the importance of these factors. RESULTS: To gain insights into the relative importance of these factors on saliva microbiome diversity, we here analyze the saliva microbiomes of chimpanzees (Pan troglodytes) and bonobos (Pan paniscus) from two sanctuaries in Africa, and from human workers at each sanctuary. The saliva microbiomes of the two Pan species are more similar to one another, and the saliva microbiomes of the two human groups are more similar to one another, than are the saliva microbiomes of human workers and apes from the same sanctuary. We also looked for the existence of a core microbiome and find no evidence for a taxon-based core saliva microbiome for Homo or Pan. In addition, we studied the saliva microbiome from apes from the Leipzig Zoo, and found an extraordinary diversity in the zoo ape saliva microbiomes that is not found in the saliva microbiomes of the sanctuary animals. CONCLUSIONS: The greater similarity of the saliva microbiomes of the two Pan species to one another, and of the two human groups to one another, are in accordance with both the phylogenetic relationships of the hosts as well as with host physiology. Moreover, the results from the zoo animals suggest that novel environments can have a large impact on the microbiome, and that microbiome analyses based on captive animals should be viewed with caution as they may not reflect the microbiome of animals in the wild.

High diversity at PRDM9 in chimpanzees and bonobos.

BACKGROUND: The PRDM9 locus in mammals has increasingly attracted research attention due to its role in mediating chromosomal recombination and possible involvement in hybrid sterility and hence speciation processes. The aim of this study was to characterize sequence variation at the PRDM9 locus in a sample of our closest living relatives, the chimpanzees and bonobos. METHODOLOGY/PRINCIPAL FINDINGS: PRDM9 contains a highly variable and repetitive zinc finger array. We amplified this domain using long-range PCR and determined the DNA sequences using conventional Sanger sequencing. From 17 chimpanzees representing three subspecies and five bonobos we obtained a total of 12 alleles differing at the nucleotide level. Based on a data set consisting of our data and recently published Pan PRDM9 sequences, we found that at the subspecies level, diversity levels did not differ among chimpanzee subspecies or between chimpanzee subspecies and bonobos. In contrast, the sample of chimpanzees harbors significantly more diversity at PRDM9 than samples of humans. Pan PRDM9 shows signs of rapid evolution including no alleles or ZnFs in common with humans as well as signals of positive selection in the residues responsible for DNA binding. CONCLUSIONS AND SIGNIFICANCE: The high number of alleles specific to the genus Pan, signs of positive selection in the DNA binding residues, and reported lack of conservation of recombination hotspots between chimpanzees and humans suggest that PRDM9 could be active in hotspot recruitment in the genus Pan. Chimpanzees and bonobos are considered separate species and do not have overlapping ranges in the wild, making the presence of shared alleles at the amino acid level between the chimpanzee and bonobo species interesting in view of the hypothesis that PRDM9 plays a universal role in interspecific hybrid sterility.

Transmission of human and macaque Plasmodium spp. to ex-captive orangutans in Kalimantan, Indonesia.

Data are lacking on the specific diseases to which great apes are susceptible and the transmission dynamics and overall impact of these diseases. We examined the prevalence of Plasmodium spp. infections in semicaptive orangutans housed at the Orangutan Care Center and Quarantine, Central Kalimantan, Indonesia, by using a combination of microscopic and DNA molecular techniques to identify the Plasmodium spp. in each animal. Previous studies indicated 2 orangutan-specific Plasmodium spp., but our data show 4 Plasmodium spp. These findings provide evidence for P. vivax transmission between humans and orangutans and for P. cynomolgi transmission between macaques and orangutans. These data have potential implications for the conservation of orangutans and also for the bidirectional transmission of parasites between orangutans and humans visiting or living in the region.

Bone assessment of free-living red squirrels (Sciurus vulgaris) from the United Kingdom.

Metabolic bone disease has been reported in free-living red squirrels (Sciurus vulgaris) in the United Kingdom but the prevalence of this disease is unknown. In this study the bone quality of free-living red squirrels in the UK was assessed by radiology and bone densitometry. The study comprised 20 red squirrels found dead and submitted to the Zoological Society of London (UK) between 1997 and 1998, 10 were from the Isle of Wight (IoW), where gray squirrels (Sciurus carolinensis) are absent, and 10 were from Cumbria (Cu), where gray squirrels are present. Gray squirrels are considered potential competitors for red squirrels. Radiologic evaluation of humerus, femur, tibia, radius, and ilium revealed a slightly lower bone density and thinner cortices in red squirrels from the IoW when compared with those from Cu. Dual-energy X-ray absorptiometry was used to measure bone mineral content and density of the isolated right humerus and femur of 19 of the 20 red squirrels. The bone densitometry study reinforced the radiographic findings. The IoW specimens had lower bone mineral density values, although statistical significance (P<0.05) between animals from the IoW and Cu was only reached for the proximal epiphysis of the femur and between males from the IoW and males from Cu for the proximal epiphysis of the humerus. A highly positive correlation (r>0.94) was found when the bone mineral content and density between the femur and the humerus among groups and within each group were compared, showing a uniform level of mineralization between upper and lower limbs. These findings suggested generalized bone loss for the IoW red squirrels that may be compatible with some degree of osteopenia. Within the wide range of causes that lead to osteopenia, malnutrition (especially protein deficiency), calcium and copper deficiencies, and genetic factors remain as possible etiologies.