Prostate cancer diagnosis based on multi-parametric MRI, clinical and pathological factors using deep learning.

Prostate cancer is one of the most common and fatal diseases among men, and its early diagnosis can have a significant impact on the treatment process and prevent mortality. Since it does not have apparent clinical symptoms in the early stages, it is difficult to diagnose. In addition, the disagreement of experts in the analysis of magnetic resonance images is also a significant challenge. In recent years, various research has shown that deep learning, especially convolutional neural networks, has appeared successfully in machine vision (especially in medical image analysis). In this research, a deep learning approach was used on multi-parameter magnetic resonance images, and the synergistic effect of clinical and pathological data on the accuracy of the model was investigated. The data were collected from Trita Hospital in Tehran, which included 343 patients (data augmentation and learning transfer methods were used during the process). In the designed model, four different types of images are analyzed with four separate ResNet50 deep convolutional networks, and their extracted features are transferred to a fully connected neural network and combined with clinical and pathological features. In the model without clinical and pathological data, the maximum accuracy reached 88%, but by adding these data, the accuracy increased to 96%, which shows the significant impact of clinical and pathological data on the accuracy of diagnosis.

Dental Caries diagnosis from bitewing images using convolutional neural networks.

BACKGROUND: Dental caries, also known as tooth decay, is a widespread and long-standing condition that affects people of all ages. This ailment is caused by bacteria that attach themselves to teeth and break down sugars, creating acid that gradually wears away at the tooth structure. Tooth discoloration, pain, and sensitivity to hot or cold foods and drinks are common symptoms of tooth decay. Although this condition is prevalent among all age groups, it is especially prevalent in children with baby teeth. Early diagnosis of dental caries is critical to preventing further decay and avoiding costly tooth repairs. Currently, dentists employ a time-consuming and repetitive process of manually marking tooth lesions after conducting radiographic exams. However, with the rapid development of artificial intelligence in medical imaging research, there is a chance to improve the accuracy and efficiency of dental diagnosis. METHODS: This study introduces a data-driven model for accurately diagnosing dental decay through the use of Bitewing radiology images using convolutional neural networks. The dataset utilized in this research includes 713 patient images obtained from the Samin Maxillofacial Radiology Center located in Tehran, Iran. The images were captured between June 2020 and January 2022 and underwent processing via four distinct Convolutional Neural Networks. The images were resized to 100 × 100 and then divided into two groups: 70% (4219) for training and 30% (1813) for testing. The four networks employed in this study were AlexNet, ResNet50, VGG16, and VGG19. RESULTS: Among different well-known CNN architectures compared in this study, the VGG19 model was found to be the most accurate, with a 93.93% accuracy. CONCLUSION: This promising result indicates the potential for developing an automatic AI-based dental caries diagnostic model from Bitewing images. It has the potential to serve patients or dentists as a mobile app or cloud-based diagnosis service (clinical decision support system).

Visual Object Recognition From Single-Trial EEG Signals Using Machine Learning Wrapper Techniques.

Responses of the human brain to different visual stimuli elicit specific patterns in electroencephalography (EEG) signals. It is confirmed that by analyzing these patterns, we can recognize the category of the visited objects. However, high levels of noise and artifacts in EEG signals and the discrepancies between the recorded data from different subjects in visual object recognition task make classification of cognitive states of subjects a serious challenge. In this research, we present a framework for evaluating machine learning and wrapper channel selection algorithms used for classifying single-trial EEG signals recorded in response to photographic stimuli. It is shown that by correctly mapping the entire EEG data space to informative feature spaces (IFS), the performance of the classification methods can improve significantly. Results outperform the state-of-the-art results and confirm efficiency of the proposed feature selection methods in capturing the most informative EEG channels. This can help to achieve high separability of object categories in single-trial visual object recognition task.

Random walks on B distributed resting-state functional connectivity to identify Alzheimer's disease and Mild Cognitive Impairment.

OBJECTIVE: Resting-state functional connectivity reveals a promising way for the early detection of dementia. This study proposes a novel method to accurately classify Healthy Controls, Early Mild Cognitive Impairment, Late Mild Cognitive Impairment, and Alzheimer's Disease individuals. METHODS: A novel mapping function based on the B distribution has been developed to map correlation matrices to robust functional connectivity. The node2vec algorithm is applied to the functional connectivity to produce node embeddings. The concatenation of these embedding has been used to derive the patients' feature vectors for further feeding into the Support Vector Machine and Logistic Regression classifiers. RESULTS: The experimental results indicate promising results in the complex four-class classification problem with an accuracy rate of 97.73% and a quadratic kappa score of 96.86% for the Support Vector Machine. These values are 97.32% and 96.74% for Logistic Regression. CONCLUSION: This study presents an accurate automated method for dementia classification. Default Mode Network and Dorsal Attention Network have been found to demonstrate a significant role in the classification method. SIGNIFICANCE: A new mapping function is proposed in this study, the mapping function improves accuracy by 10-11% in the Alzheimer's Disease Neuroimaging Initiative (ADNI) database.

A periodic spatio-spectral filter for event-related potentials.

With respect to single trial detection of event-related potentials (ERPs), spatial and spectral filters are two of the most commonly used pre-processing techniques for signal enhancement. Spatial filters reduce the dimensionality of the data while suppressing the noise contribution and spectral filters attenuate frequency components that most likely belong to noise subspace. However, the frequency spectrum of ERPs overlap with that of the ongoing electroencephalogram (EEG) and different types of artifacts. Therefore, proper selection of the spectral filter cutoffs is not a trivial task. In this research work, we developed a supervised method to estimate the spatial and finite impulse response (FIR) spectral filters, simultaneously. We evaluated the performance of the method on offline single trial classification of ERPs in datasets recorded during an oddball paradigm. The proposed spatio-spectral filter improved the overall single-trial classification performance by almost 9% on average compared with the case that no spatial filters were used. We also analyzed the effects of different spectral filter lengths and the number of retained channels after spatial filtering.

Effects of eye artifact removal methods on single trial P300 detection, a comparative study.

Electroencephalographic signals are commonly contaminated by eye artifacts, even if recorded under controlled conditions. The objective of this work was to quantitatively compare standard artifact removal methods (regression, filtered regression, Infomax, and second order blind identification (SOBI)) and two artifact identification approaches for independent component analysis (ICA) methods, i.e. ADJUST and correlation. To this end, eye artifacts were removed and the cleaned datasets were used for single trial classification of P300 (a type of event related potentials elicited using the oddball paradigm). Statistical analysis of the results confirms that the combination of Infomax and ADJUST provides a relatively better performance (0.6% improvement on average of all subject) while the combination of SOBI and correlation performs the worst. Low-pass filtering the data at lower cutoffs (here 4 Hz) can also improve the classification accuracy. Without requiring any artifact reference channel, the combination of Infomax and ADJUST improves the classification performance more than the other methods for both examined filtering cutoffs, i.e., 4 Hz and 25 Hz.

Localizing heart sounds in respiratory signals using singular spectrum analysis.

Respiratory sounds are always contaminated by heart sound interference. An essential preprocessing step in some of the heart sound cancellation methods is localizing primary heart sound components. Singular spectrum analysis (SSA), a powerful time series analysis technique, is used in this paper. Despite the frequency overlap of the heart and lung sound components, two different trends in the eigenvalue spectra are recognizable, which leads to find a subspace that contains more information about the underlying heart sound. Artificially mixed and real respiratory signals are used for evaluating the performance of the method. Selecting the appropriate length for the SSA window results in good decomposition quality and low computational cost for the algorithm. The results of the proposed method are compared with those of well-established methods, which use the wavelet transform and entropy of the signal to detect the heart sound components. The proposed method outperforms the wavelet-based method in terms of false detection and also correlation with the underlying heart sounds. Performance of the proposed method is slightly better than that of the entropy-based method. Moreover, the execution time of the former is significantly lower than that of the latter.

Removal of ballistocardiogram artifacts using the cyclostationary source extraction method.

Ballistocardiogram (BCG) artifact is considered here as the sum of a number of independent cyclostationary components having the same cycle frequency. Our proposed method, called cyclostationary source extraction (CSE), is able to extract these components without much destructive effect on the background electroencephalogram (EEG). It is shown that the proposed method outperforms other methods particularly in preserving the remaining signals. CSE is utilized to remove the BCG artifact from real EEG data recorded inside the magnetic resonance (MR) scanner, i.e., visual evoked potential (VEP). The results are compared to the results of benchmark BCG removal techniques. Analyzing the power spectral density of the cleaned EEG data, it is shown that CSE effectively removes the frequency components corresponding to the BCG artifact. It is also shown that VEPs recorded inside the scanner and processed using the proposed method are more correlated with the VEPs recorded outside the scanner. Moreover, there is no need for electrocardiogram (ECG) data in this method as the cycle frequency of the BCG is directly computed from the contaminated EEG signals.

Variational Bayes for spatiotemporal identification of event-related potential subcomponents.

We propose a novel method for detection and tracking of event-related potential (ERP) subcomponents. The ERP subcomponent sources are assumed to be electric current dipoles (ECDs), and their locations and parameters (amplitude, latency, and width) are estimated and tracked from trial to trial. Variational Bayes implies that the parameters can be estimated separately using the likelihood function of each parameter. Estimations of ECD locations, which have nonlinear relations to the measurement, are obtained by particle filtering. Estimations of the amplitude and noise covariance matrix of the measurement are optimally given by the maximum likelihood (ML) approach, while estimations of the latency and the width are obtained by the Newton-Raphson technique. New recursive methods are introduced for both the ML and Newton-Raphson approaches to prevent divergence in the filtering procedure where there is a very low SNR. The main advantage of the method is the ability to track varying ECD locations. The proposed method is assessed using simulated as well as real data, and the results emphasize the potential of this new approach for the analysis of real-time measures of neural activity.