Effect of time of sample collection after onset of diarrhea on fecal microbiota composition of calves.

BACKGROUND: The effect of time of sample collection after onset of diarrhea on the fecal microbiota composition of calves is unknown. OBJECTIVE: Compare the fecal microbiota of calves with diarrhea onset on the day of sampling (D <24h), and calves having had diarrhea for >24 to 48 hours (D 24-48h). ANIMALS: Thirty-one diarrheic calves (20 D <24h and 11 D 24-48h), 3 to 7 days of age. METHODS: Cross-sectional study. Diarrhea was defined as a calf with loose feces or watery feces. Assessment of the fecal microbiota was performed by sequencing of 16S ribosomal RNA gene amplicons. RESULTS: Richness and diversity were not statistically different between D <24h and D 24-48h (P > .05), but bacterial membership and structure differed significantly (AMOVA, P < .001 for both comparisons). Linear discriminant analysis effect size (LefSe) showed an enrichment of Faecalibacterium, Phocaeicola, Lachnospiracea, and Lactobacillus in the feces of D <24h calves, whereas Escherichia/Shigella, Ligilactobacillus, Clostridium_Sensu_Stricto, Clostridium_Incerta_Sedis, and Enterococcus were enriched in the D 24-48h calves. CONCLUSION AND CLINICAL IMPORTANCE: Rapid changes in fecal microbiota occur during the first 48 hours of diarrhea with an enrichment of lactic acid-producing bacteria in D <24h followed by an enrichment in Escherichia/Shigella and Clostridium spp. in D 24-48h. The time from diarrhea onset to sampling appears to affect the bacterial composition. Researchers should standardize times for fecal collection based on the time of diarrhea.

Assessing dairy calf response to long-distance transportation using conditioned place aversion.

Surplus neonatal dairy calves are routinely transported long distances from the dairy farm of birth to calf raisers. Most of the research assessing the effect of transportation on young calves has focused on physiology and health, without considering calf affective states. The aim of this study was to assess the affective response of young male dairy calves to transportation using conditioned place aversion (CPA) testing. Three bouts of transportation exposed dairy calves (n = 95) to transportation for 6 (n = 31), 12 (n = 32), or 16 h (n = 30). During transportation, the trailer interior was made visually distinct using blue horizontal (n = 2 groups) or red vertical (n = 1 group) stripes. Distinct color and pattern combinations were used to create a visual association with transportation. A subset of calves (6 h = 14; 12 h = 14; 16 h = 14) were selected for CPA testing if they were ≥7 and <28 d of age at the time of testing after transport. A group of sham calves that were not transported (n = 13) and were ≥7 and <28 d of age at the time of testing also were enrolled. Wall coverings with the same color and pattern of those in the trailer were fixed in individual sham calf stalls for 6 h on the morning of transportation. Before transportation, calves were placed in a 3-compartment test apparatus with neutral walls and were able to move about freely for 15 min to habituate them to the test apparatus. Calves were CPA tested on d 2 after transportation. During the posttest, calves were placed in the test apparatus with 3 compartments including a neutral center pen (center), blue horizontal stripe compartment (side), and red vertical stripe compartment (side) for 30 min; calves were able to move throughout the apparatus freely. Time spent in each compartment was recorded using continuous observation and analyzed as a percentage of total time in the apparatus. Calves spent less time in the compartment associated with transportation compared with the compartment with no prior association (22% vs. 42% ± 3% of time in the transportation-association and no-association compartments, respectively); however, this behavior was not affected by transportation treatment. Results from this study suggest that calves may perceive transportation to be aversive regardless of duration but may also be attracted to exploring a novel stimulus.