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1.
Surg Endosc ; 28(2): 537-42, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24061627

RESUMO

BACKGROUND: Virtual reality (VR) laparoscopic simulators have been around for more than 10 years and have proven to be cost- and time-effective in laparoscopic skills training. However, most simulators are, in our experience, considered less interesting by residents and are often poorly accessible. Consequently, these devices are rarely used in actual training. In an effort to make a low-cost and more attractive simulator, a custom-made Nintendo Wii game was developed. This game could ultimately be used to train the same basic skills as VR laparoscopic simulators ought to. Before such a video game can be implemented into a surgical training program, it has to be validated according to international standards. METHODS: The main goal of this study was to test construct and concurrent validity of the controls of a prototype of the game. In this study, the basic laparoscopic skills of experts (surgeons, urologists, and gynecologists, n = 15) were compared to those of complete novices (internists, n = 15) using the Wii Laparoscopy (construct validity). Scores were also compared to the Fundamentals of Laparoscopy (FLS) Peg Transfer test, an already established assessment method for measuring basic laparoscopic skills (concurrent validity). RESULTS: Results showed that experts were 111 % faster (P = 0.001) on the Wii Laparoscopy task than novices. Also, scores of the FLS Peg Transfer test and the Wii Laparoscopy showed a significant, high correlation (r = 0.812, P < 0.001). CONCLUSIONS: The prototype setup of the Wii Laparoscopy possesses solid construct and concurrent validity.


Assuntos
Competência Clínica , Simulação por Computador , Educação Médica Continuada/métodos , Laparoscopia/educação , Interface Usuário-Computador , Jogos de Vídeo/normas , Humanos , Médicos/normas
2.
Zoonoses Public Health ; 57(5): 345-57, 2010 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-19486501

RESUMO

Salmonella Enteritidis strains of egg- and non-egg-related origin were characterized molecularly to find markers correlated with the egg-contaminating property of Salmonella Enteritidis. Isolates were examined by random amplified polymorphic DNA (RAPD), plasmid profiling and phage typing. Furthermore, the presence of 30 virulence genes was tested by PCR. In genetic fingerprinting and gene content, only small differences between the strains were found and no correlation was observed with the origin (egg-related versus non-egg-related). A major RADP group was present in both egg- and non-egg-related strains, but other smaller RAPD groups were present as well in both categories of strains. Phage types PT4 and PT21 were predominant. Differential mRNA expression levels of fimA and agfA under conditions of growth simulating the conditions during egg formation were determined by real-time RT-PCR. Although differences in fimA and agfA expression levels were observed between the strains, these could not be correlated with the origin of the strains (egg-related versus non-egg-related). The highest expression levels of agfA and fimA were only found in two non-egg-related strains, which seemed to be correlated with the presence of a 93 kb plasmid instead of the 60 kb virulence plasmid. Our results seem to indicate only a limited role for at least type I fimbriae (encoded by fim operon) in egg contamination by Salmonella Enteritidis.


Assuntos
Ovos/microbiologia , Regulação Bacteriana da Expressão Gênica/fisiologia , Variação Genética , Salmonella enteritidis/genética , Animais , Tipagem de Bacteriófagos , Galinhas , Europa (Continente)/epidemiologia , Humanos , Infecções por Salmonella/epidemiologia , Infecções por Salmonella/microbiologia , Salmonella enteritidis/isolamento & purificação
3.
J Psychosom Obstet Gynaecol ; 30(1): 1-4, 2009 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-19308776

RESUMO

Although widely criticized for its didactical inadequacy, the accepted form for medical postgraduate training is still the symposium. One of its great deficiencies is the inability for participants to put new (scientific) findings into a personal medical context by means of discussion and reflection. To meet the didactical demands an innovative approach to postgraduate education was developed and tested with gynaecologist as teachers and general practitioners as participants. The first results with five courses are very positive: in comparison to the symposium, the new approach stimulates internalisation of provided knowledge much more, information retention is much higher and the reactions of participants are overwhelmingly enthusiastic. A short outline of the didactic model and its procedures is provided.


Assuntos
Educação de Pós-Graduação em Medicina/organização & administração , Inovação Organizacional , Congressos como Assunto , Educação de Pós-Graduação em Medicina/normas , Ginecologia/educação , Humanos , Internato e Residência , Aprendizagem , Obstetrícia/educação , Projetos Piloto
4.
J Appl Microbiol ; 102(4): 1095-106, 2007 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-17381753

RESUMO

AIMS: To select Lactobacillus strains from laying hens for potential use as probiotic to control Salmonella Enteritidis infection. METHODS AND RESULTS: One hundred and eighty-six lactobacilli were isolated from the cloaca and vagina of laying hens, and identified at the species level by a polyphasic taxonomic approach. All isolates belonged to the Lactobacillus acidophilus, Lactobacillus reuteri or Lactobacillus salivarius phylogenetic groups, with the L. reuteri group being the most predominant group. Based on genetic diversity, about 50 representative strains were selected and tested for in vitro properties that could be predictive for probiotic activity in laying hens. Salmonella inhibition was shown to be species dependent, and correlated to some extent with the production of lactic acid. A selection of strains was evaluated in a S. Enteritidis challenge experiment. Two strains, L. reuteri R-17485 and Lactobacillus johnsonii R-17504 significantly decreased the colonization of chicks by S. Enteritidis in caeca, liver and spleen. CONCLUSIONS: Lactobacilli isolated from laying hens were observed to inhibit Salmonella growth in vitro, most probably through production of lactic acid, and to decrease in vivo the S. Enteritidis colonization of chicks. SIGNIFICANCE AND IMPACT OF THE STUDY: The data demonstrate that Lactobacillus isolates from laying hens may have probiotic potential in reducing S. Enteritidis infection.


Assuntos
Galinhas/microbiologia , Cloaca/microbiologia , Lactobacillus/classificação , Salmonella enteritidis/crescimento & desenvolvimento , Vagina/microbiologia , Animais , Feminino , Lactobacillus/isolamento & purificação , Doenças das Aves Domésticas/prevenção & controle , Probióticos/uso terapêutico , Salmonelose Animal/prevenção & controle
5.
Int J Syst Evol Microbiol ; 52(Pt 3): 953-966, 2002 May.
Artigo em Inglês | MEDLINE | ID: mdl-12054263

RESUMO

Thirty-three clinical, dairy and industrial isolates of aerobic endospore-forming bacteria which were unreactive in routine identification tests were characterized genotypically by using amplified rDNA restriction analysis (ARDRA), 16S rDNA sequencing and DNA-DNA reassociation, and phenotypically by using fatty acid methyl ester (FAME) analysis, SDS-PAGE of whole-cell proteins, API Biotype 100 assimilation tests and 16 other routine phenotypic tests. Three isolates were identified as strains of Bacillus badius, 12 as Brevibacillus agri, including 3 strains associated with an outbreak of waterborne illness, 4 as Brevibacillus centrosporus and 2 as Brevibacillus parabrevis; 12 strains contaminating an antibiotic production plant were recognized as members of a new species, for which the name Brevibacillus invocatus is proposed, with the type strain LMG 18962T (= B2156T = CIP 106911T = NCIMB 13772T).


Assuntos
Bacillus/classificação , Bactérias Aeróbias Gram-Negativas/classificação , Bacillus/genética , Bacillus/metabolismo , Infecções Bacterianas/microbiologia , Técnicas de Tipagem Bacteriana , DNA Ribossômico/análise , Laticínios/microbiologia , Bactérias Aeróbias Gram-Negativas/genética , Bactérias Aeróbias Gram-Negativas/metabolismo , Humanos , Microbiologia Industrial , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Fenótipo , RNA Ribossômico 16S/genética , Mapeamento por Restrição , Análise de Sequência de DNA , Esporos Bacterianos , Microbiologia da Água
6.
J Appl Microbiol ; 92(5): 983-91, 2002.
Artigo em Inglês | MEDLINE | ID: mdl-11972705

RESUMO

AIMS: A new polymerase chain reaction (PCR) method for the identification of Bacillus sporothermodurans strains from sterilized or ultrahigh temperature-treated milk and milk products and from other non-milk sources and environments, including the dairy farm. METHODS AND RESULTS: Two strains from raw milk and feed concentrate could be allocated to B. sporothermodurans based on 16S rDNA sequencing and DNA-DNA hybridization results. Two specific PCR primers were derived from the 16S rRNA gene of B. sporothermodurans. CONCLUSIONS: The PCR identification method was validated using a collection of B. sporothermodurans strains from different sources and on a large collection of dairy and non-dairy Bacillus spp. and other relevant taxa. SIGNIFICANCE AND IMPACT OF THE STUDY: This PCR method was used as a screening method for strains with very heat-resistant endospores, isolated at the dairy farm level after heat treatment for 30 min at 100 degrees C. Seventeen strains isolated at the dairy farm were identified as B. sporothermodurans. They originated mainly from feed concentrate and also from soy, pulp and silage. The PCR identification method described here can, therefore, contribute to a better understanding of the route by which B. sporothermodurans contaminates raw and/or heat-treated milk.


Assuntos
Bacillus/classificação , Bacillus/genética , Laticínios/microbiologia , Reação em Cadeia da Polimerase/métodos , Ração Animal/microbiologia , Animais , Bacillus/química , Bacillus/fisiologia , Sequência de Bases , Bovinos , DNA Ribossômico/análise , Indústria de Laticínios , Ácidos Graxos/análise , Temperatura Alta , Leite/microbiologia , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Esporos Bacterianos/fisiologia , Esterilização/métodos
7.
Int J Syst Evol Microbiol ; 52(Pt 6): 2015-2022, 2002 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-12508862

RESUMO

Twenty-two isolates originating from the gut of healthy cultured turbot larvae in Norway were investigated using a polyphasic approach. Amplified fragment length polymorphism fingerprinting analysis showed that the isolates have typical patterns and form two main groups. Phylogenetic analysis revealed that the isolates belong to the gamma-Proteobacteria, with Vibrio hollisae as their closest neighbour. DNA-DNA hybridization, chemotaxonomic and phenotypic analyses further proved that these isolates represent a tight novel taxon that differs from currently described species in the family Vibrionaceae. It is proposed that these novel isolates be accommodated in a new genus, Enterovibrio gen. nov., with Enterovibrio norvegicus sp. nov. as the type species. Isolates were motile by a polar flagellum, positive for oxidase, catalase, arginine dihydrolase and beta-galactosidase, but negative for the Voges-Proskauer reaction. They produced indole, did not reduce nitrate and were resistant to the vibriostatic agent O/129. The DNA G+C content of E. norvegicus was 47.1-47.9 mol%. The type strain is E. norvegicus LMG 19839(T) (= CAIM 430(T)).


Assuntos
Linguados/microbiologia , Vibrionaceae/classificação , Vibrionaceae/isolamento & purificação , Animais , Composição de Bases , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/genética , Sistema Digestório/microbiologia , Dados de Sequência Molecular , Fenótipo , Filogenia , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Vibrionaceae/genética , Vibrionaceae/metabolismo
8.
Int J Syst Evol Microbiol ; 51(Pt 5): 1773-1782, 2001 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-11594608

RESUMO

Thirty-one heavy-metal-resistant bacteria isolated from industrial biotopes were subjected to polyphasic characterization, including 16S rDNA sequence analysis, DNA-DNA hybridizations, biochemical tests, whole-cell protein and fatty-acid analyses. All strains were shown to belong to the Ralstonia branch of the beta-Proteobacteria. Whole-cell protein profiles and DNA-DNA hybridizations revealed two clearly distinct groups, showing low similarity to known Ralstonia species. These two groups, of 8 and 17 isolates, were assigned to two new species, for which the names Ralstonia campinensis sp. nov. and Ralstonia metallidurans sp. nov. are proposed. The type strains are WS2T (= LMG 19282T = CCUG 44526T) and CH34T (= LMG 1195T = DSM 2839T), respectively. Six isolates were allocated to Ralstonia basilensis, which presently contains only the type strain; an emendation of the latter species description is therefore proposed.


Assuntos
Betaproteobacteria/classificação , Betaproteobacteria/efeitos dos fármacos , Farmacorresistência Bacteriana , Microbiologia Industrial , Metais Pesados/farmacologia , Proteínas de Bactérias/química , Composição de Bases , Betaproteobacteria/metabolismo , DNA Ribossômico/análise , Eletroforese em Gel de Poliacrilamida , Ácidos Graxos/análise , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Fenótipo , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
9.
Int J Syst Evol Microbiol ; 51(Pt 4): 1315-22, 2001 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-11491327

RESUMO

DNA-DNA hybridizations were performed between Bradyrhizobium strains, isolated mainly from Faidherbia albida and Aeschynomene species, as well as Bradyrhizobium reference strains. Results indicated that the genus Bradyrhizobium consists of at least 11 genospecies, I to XI. The genospecies formed four subgeneric groups that were more closely related to each other (>40% DNA hybridization) than to other genospecies (<40% DNA hybridization): (i) genospecies I (Bradyrhizobium japonicum), III (Bradyrhizobium liaoningense), IV and V; (ii) genospecies VI and VIII; (iii) genospecies VII and IX; and (iv) genospecies II (Bradyrhizobium elkanii), X and XI. Photosynthetic Aeschynomene isolates were found to belong to at least two distinct genospecies in one subgeneric group. DNA-DNA hybridization data are compared with data from amplified fragment length polymorphism analysis and 165-23S rDNA spacer sequence analysis.


Assuntos
Bradyrhizobium/genética , DNA Bacteriano/genética , Bradyrhizobium/classificação , Bradyrhizobium/isolamento & purificação , Bradyrhizobium/metabolismo , Fabaceae/microbiologia , Hibridização de Ácido Nucleico , Fotossíntese , Polimorfismo Genético , Especificidade da Espécie
10.
Int J Syst Evol Microbiol ; 51(Pt 3): 971-976, 2001 May.
Artigo em Inglês | MEDLINE | ID: mdl-11411723

RESUMO

Three bacterial isolates that were phenotypically indistinguishable from Taylorella equigenitalis were obtained from the urethral fossae of three male donkeys (Equus asinus), one located in the state of California and the other two in the state of Kentucky, USA. Based on results of pulsed-field gel electrophoresis, the isolate from California differed from the two Kentucky isolates, which were the same. Mares bred artificially (California) or naturally (Kentucky) did not show signs of disease, even though infection with the organism was established in those bred naturally. Mares and, uncharacteristically, all three jacks produced antibodies that reacted in the complement fixation test utilized to identify mares recently infected with T. equigenitalis. Sequence analysis of DNA encoding the 16S rRNA revealed that the gene sequences of these isolates were virtually identical to each other (>99.8% similarity), but different (97.6% similarity) from those of several confirmed isolates of T. equigenitalis. The 16S rDNA sequences of the latter were 100% identical. DNA-DNA hybridization studies revealed a mean hybridization level of 89% between the donkey isolate from California and the donkey isolate from Kentucky. On the other hand, the mean DNA-DNA hybridization level from the donkey isolates with DNA from a strain of T. equigenitalis was 23%. The DNA G+C composition was 37.8 mol% for the two donkey isolates, as well as the strain of T. equigenitalis used in the hybridization studies. These data support our opinion that micro-organisms isolated from the male donkeys are different from T. equigenitalis and it is proposed that they be considered a new species within the genus Taylorella and named Taylorella asinigenitalis sp. nov. The type strain is strain UCD-1T (= ATCC 700933T = LMG 19572T).


Assuntos
Equidae/microbiologia , Filogenia , Taylorella equigenitalis/classificação , Uretra/microbiologia , Animais , Anticorpos Antibacterianos/sangue , California , DNA Bacteriano/genética , DNA Ribossômico/genética , Eletroforese em Gel de Campo Pulsado , Enzimas/análise , Feminino , Kentucky , Masculino , Dados de Sequência Molecular , Fenótipo , RNA Ribossômico 16S/genética , Taylorella equigenitalis/genética , Taylorella equigenitalis/isolamento & purificação
11.
Int J Syst Evol Microbiol ; 51(Pt 2): 547-558, 2001 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-11321101

RESUMO

Strains isolated independently from two patients could be recognized as Ralstonia pickettii biovar 3/'thomasii'. The 16S rDNA sequences of these strains and two other strains of R. pickettii biovar 3/'thomasii' clustered at less than 98% similarity versus all other described Ralstonia species and at less than 97 % versus the two other R. pickettii biovars. The separate species status of R. pickettii biovar 3/'thomasii' was confirmed by DNA-DNA hybridization, indicating less than 60% DNA homology with the R. pickettii biovars Va-1 and Va-2 and with two as-yet unclassified but biochemically similar Ralstonia strains. Phenotypically, this Ralstonia species can be distinguished from all described Ralstonia species by its acidification of D-arabitol and mannitol and by its lack of nitrate reduction and of alkalinization of tartrate and from two as-yet unclassified Ralstonia strains only by its lack of nitrate reduction. The name Ralstonia mannitolytica sp. nov. is proposed, reflecting the characteristic acidification of mannitol. Resistance to desferrioxamine is another difference from R. pickettii and Ralstonia solanacearum. Although several nosocomial outbreaks have been associated with R. mannitolytica, life-threatening infections have not yet been reported, possibly due to misidentification as Pseudomonas fluorescens or Burkholderia cepacia. In at least one of the two cases reported here, the R. mannitolytica isolate was found to be clinically relevant, causing recurrent nosocomial meningitis, with an infected implanted catheter as the source. The type strain of R. mannitolytica is NCIMB 10805T (= LMG 6866T), which was isolated during the first described outbreak as 'Pseudomonas thomasii' at St Thomas' Hospital, London, UK, in 1971.


Assuntos
Betaproteobacteria/classificação , Betaproteobacteria/patogenicidade , Infecção Hospitalar/microbiologia , Meningites Bacterianas/microbiologia , Composição de Bases , Betaproteobacteria/genética , Ácidos Graxos/análise , Humanos , Meningites Bacterianas/epidemiologia , Dados de Sequência Molecular , Recidiva , Análise de Sequência de DNA , Homologia de Sequência do Ácido Nucleico , Terminologia como Assunto
12.
J Biol Chem ; 276(29): 26875-82, 2001 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-11297546

RESUMO

Axin, a negative regulator of the Wnt signaling pathway, forms a complex with glycogen synthase kinase-3beta (GSK-3beta), beta-catenin, adenomatous polyposis coli (APC) gene product, and Dvl, and it regulates GSK-3beta-dependent phosphorylation in the complex and the stability of beta-catenin. Using yeast two-hybrid screening, we found that regulatory subunits of protein phosphatase 2A, PR61beta and -gamma, interact with Axin. PR61beta or -gamma formed a complex with Axin in intact cells, and their interaction was direct. The binding site of PR61beta on Axin was different from those of GSK-3beta, beta-catenin, APC, and Dvl. Although PR61beta did not affect the stability of beta-catenin, it inhibited Dvl- and beta-catenin-dependent T cell factor activation in mammalian cells. Moreover, it suppressed beta-catenin-induced axis formation and expression of siamois, a Wnt target gene, in Xenopus embryos, suggesting that PR61beta acts either at the level of beta-catenin or downstream of it. Taken together with the previous observations that PR61 interacts with APC and functions upstream of beta-catenin, these results demonstrate that PR61 regulates the Wnt signaling pathway at various steps.


Assuntos
Fosfoproteínas Fosfatases/metabolismo , Proteínas Proto-Oncogênicas/antagonistas & inibidores , Proteínas Repressoras , Transdução de Sinais , Transativadores , Proteínas de Peixe-Zebra , Animais , Proteína Axina , Células COS , Proteínas do Citoesqueleto/metabolismo , Fosfoproteínas Fosfatases/química , Proteína Fosfatase 2 , Proteínas/metabolismo , Proteínas Proto-Oncogênicas/metabolismo , Proteínas Wnt , Xenopus , Proteínas de Xenopus , beta Catenina
13.
Exp Cell Res ; 264(2): 372-87, 2001 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-11262194

RESUMO

In Saccharomyces cerevisiae, PTPA is encoded by two genes, YPA1 and YPA2. In order to examine the biological role of PTPA as potential regulator of protein phosphatase 2A (PP2A), we compared the phenotypes of the ypaDelta mutants with these of PP2A-deficient strains. While deletion of both YPA genes is lethal, deletion of YPA1 alone results in a phenotype resembling that of PP2A-deficient strains in specific aspects such as aberrant bud morphology, abnormal actin distribution, and similar growth defects under various growth conditions. These phenotypes were even more pronounced when YPA1 was deleted in a pph21Delta genetic background. Moreover, ypaDelta mutants are hypersensitive to nocodazole and show inappropriate mitotic spindle formation as previously described for mutants in the catalytic subunit of PP2A, suggesting that Ypa, like PP2A, has a function in mitotic spindle formation. These results are consistent with an in vivo role of Ypa as a regulator of PP2A. However, unlike a PP2A-deficient strain, ypaDelta mutants do not show a G2 arrest. Therefore, Ypa does not seem to play a role in the regulation of PP2A at this stage of the cell cycle. These results imply that Ypa regulates a specific subset of PP2A functions, possibly by controlling the subunit composition of PP2A.


Assuntos
Fosfoproteínas Fosfatases/metabolismo , Fosfoproteínas Fosfatases/fisiologia , Proteínas/metabolismo , Proteínas de Saccharomyces cerevisiae , Actinas/metabolismo , Ativação Enzimática , Fase G2 , Hidroxiureia/farmacologia , Peptídeos e Proteínas de Sinalização Intracelular , Mitose/fisiologia , Mutagênese , Nocodazol/farmacologia , Peptidilprolil Isomerase , Fosfoproteínas Fosfatases/genética , Proteína Fosfatase 2 , Proteínas Tirosina Fosfatases/metabolismo , Proteínas/genética , Proteínas/fisiologia , Saccharomyces cerevisiae/efeitos dos fármacos , Saccharomyces cerevisiae/enzimologia , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crescimento & desenvolvimento , Fuso Acromático/fisiologia
14.
J Biochem ; 129(4): 551-60, 2001 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-11275554

RESUMO

The different oligomers composing the high molecular weight calcium/calmodulin-dependent protein kinase II (CaMKII) holoenzyme, previously shown to be transiently activated during Xenopus oocyte maturation, migrate on SDS-PAGE as proteins of 83, 72, 62, 56, and 52 kDa and have all been cloned. The holoenzyme consists of the CaMKII isoforms gammaB, gammaC, and delta12, already described in other species, while gammaJ, gammaK, gammaL, gammaM, and gammaN are now described for the first time. The gamma-isoforms are splice variants of the gamma-gene, containing in their variable region different combinations of known exons and one, two or three novel exons. Semi-quantitative RT-PCR revealed that all isoforms identified in prophase oocytes are also expressed in adult tissues with a tissue-specific expression pattern. At least thirty different CaMKII isoforms could be identified in different Xenopus adult tissues, most of which are described here for the first time.


Assuntos
Proteínas Quinases Dependentes de Cálcio-Calmodulina/genética , Proteínas Quinases Dependentes de Cálcio-Calmodulina/isolamento & purificação , Perfilação da Expressão Gênica , Oócitos/enzimologia , Xenopus laevis , Sequência de Aminoácidos , Animais , Southern Blotting , Encéfalo/enzimologia , Cálcio/metabolismo , Proteínas Quinases Dependentes de Cálcio-Calmodulina/química , Proteínas Quinases Dependentes de Cálcio-Calmodulina/metabolismo , Calmodulina/metabolismo , Clonagem Molecular , Dados de Sequência Molecular , Miocárdio/enzimologia , Isoformas de Proteínas/química , Isoformas de Proteínas/genética , Isoformas de Proteínas/isolamento & purificação , Isoformas de Proteínas/metabolismo , Estrutura Terciária de Proteína , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos
15.
Appl Environ Microbiol ; 67(3): 1107-15, 2001 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-11229899

RESUMO

We examined the diversity of the plasmids and of the gene tdnQ, involved in the oxidative deamination of aniline, in five bacterial strains that are able to metabolize both aniline and 3-chloroaniline (3-CA). Three strains have been described and identified previously, i.e., Comamonas testosteroni I2 and Delftia acidovorans CA28 and BN3.1. Strains LME1 and B8c were isolated in this study from linuron-treated soil and from a wastewater treatment plant, respectively, and were both identified as D. acidovorans. Both Delftia and Comamonas belong to the family Comamonadaceae. All five strains possess a large plasmid of ca. 100 kb, but the plasmids from only four strains could be transferred to a recipient strain by selection on aniline or 3-CA as a sole source of carbon and/or nitrogen. Plasmid transfer experiments and Southern hybridization revealed that the plasmid of strain I2 was responsible for total aniline but not 3-CA degradation, while the plasmids of strains LME1 and B8c were responsible only for the oxidative deamination of aniline. Several transconjugant clones that had received the plasmid from strain CA28 showed different degradative capacities: all transconjugants could use aniline as a nitrogen source, while only some of the transconjugants could deaminate 3-CA. For all four plasmids, the IS1071 insertion sequence of Tn5271 was found to be located on a 1.4-kb restriction fragment, which also hybridized with the tdnQ probe. This result suggests the involvement of this insertion sequence element in the dissemination of aniline degradation genes in the environment. By use of specific primers for the tdnQ gene from Pseudomonas putida UCC22, the diversity of the PCR-amplified fragments in the five strains was examined by denaturing gradient gel electrophoresis (DGGE). With DGGE, three different clusters of the tdnQ fragment could be distinguished. Sequencing data showed that the tdnQ sequences of I2, LME1, B8c, and CA28 were very closely related, while the tdnQ sequences of BN3.1 and P. putida UCC22 were only about 83% identical to the other sequences. Northern hybridization revealed that the tdnQ gene is transcribed only in the presence of aniline and not when only 3-CA is present.


Assuntos
Compostos de Anilina/metabolismo , Betaproteobacteria/classificação , Betaproteobacteria/genética , Variação Genética , Transaminases/genética , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Betaproteobacteria/metabolismo , Biodegradação Ambiental , Southern Blotting , Conjugação Genética , Elementos de DNA Transponíveis , DNA Bacteriano/genética , Eletroforese em Gel de Poliacrilamida/métodos , Transferência Genética Horizontal , Glutamato-Amônia Ligase/genética , Glutamato-Amônia Ligase/metabolismo , Dados de Sequência Molecular , Plasmídeos/genética , Reação em Cadeia da Polimerase , Análise de Sequência de DNA , Transaminases/metabolismo
16.
Biochem J ; 353(Pt 3): 417-39, 2001 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-11171037

RESUMO

Protein phosphatase 2A (PP2A) comprises a family of serine/threonine phosphatases, minimally containing a well conserved catalytic subunit, the activity of which is highly regulated. Regulation is accomplished mainly by members of a family of regulatory subunits, which determine the substrate specificity, (sub)cellular localization and catalytic activity of the PP2A holoenzymes. Moreover, the catalytic subunit is subject to two types of post-translational modification, phosphorylation and methylation, which are also thought to be important regulatory devices. The regulatory ability of PTPA (PTPase activator), originally identified as a protein stimulating the phosphotyrosine phosphatase activity of PP2A, will also be discussed, alongside the other regulatory inputs. The use of specific PP2A inhibitors and molecular genetics in yeast, Drosophila and mice has revealed roles for PP2A in cell cycle regulation, cell morphology and development. PP2A also plays a prominent role in the regulation of specific signal transduction cascades, as witnessed by its presence in a number of macromolecular signalling modules, where it is often found in association with other phosphatases and kinases. Additionally, PP2A interacts with a substantial number of other cellular and viral proteins, which are PP2A substrates, target PP2A to different subcellular compartments or affect enzyme activity. Finally, the de-regulation of PP2A in some specific pathologies will be touched upon.


Assuntos
Divisão Celular , Fosfoproteínas Fosfatases/metabolismo , Transdução de Sinais , Animais , Fosfoproteínas Fosfatases/química , Fosfoproteínas Fosfatases/genética , Proteína Fosfatase 2
17.
Int J Syst Evol Microbiol ; 51(Pt 1): 73-79, 2001 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-11211276

RESUMO

Seven Gram-negative strains, isolated in 1990 from a 10(6)-fold dilution series of seawater from Resurrection Bay, a deep fjord of the Gulf of Alaska, were identified in a polyphasic taxonomic study. Analysis of 16S rDNA sequences and DNA-homology studies confirmed the phylogenetic position of all strains in the genus Sphingomonas and further indicated that all of the strains constitute a single homogeneous genomic species, distinct from all validly described Sphingomonas species. The ability to differentiate the species, both phenotypically and chemotaxonomically, from its nearest neighbours justifies the proposal of a new species name, Sphingomonas alaskensis sp. nov., for this taxon. Strain LMG 18877T (= RB2256T = DSM 13593T) was selected as the type strain.


Assuntos
Água do Mar/microbiologia , Sphingomonas/classificação , Sphingomonas/genética , Técnicas de Tipagem Bacteriana , Composição de Bases , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Ácidos Graxos/análise , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Sphingomonas/química , Sphingomonas/isolamento & purificação
18.
Int J Syst Evol Microbiol ; 50 Pt 5: 1741-1753, 2000 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-11034482

RESUMO

Aerobic endospore-forming bacteria were isolated from soils taken from active fumaroles on Mount Rittmann and Mount Melbourne in northern Victoria Land, Antarctica, and from active and inactive fumaroles on Candlemas Island, South Sandwich archipelago. The Mt Rittmann and Mt Melbourne soils yielded a dominant, moderately thermophilic and acidophilic, aerobic endospore-former growing at pH 5.5 and 50 degrees C, and further strains of the same organism were isolated from a cold, dead fumarole at Clinker Gulch, Candlemas Island. Amplified rDNA restriction analysis, SDS-PAGE and routine phenotypic tests show that the Candlemas Island isolates are not distinguishable from the Mt Rittmann strains, although the two sites are 5600 km apart, and 16S rDNA sequence comparisons and DNA relatedness data support the proposal of a new species, Bacillus fumarioli, the type strain of which is LMG 17489T.


Assuntos
Bacillus/classificação , Bacillus/isolamento & purificação , Microbiologia do Solo , Erupções Vulcânicas , Regiões Antárticas , Bacillus/genética , Bacillus/fisiologia , Proteínas de Bactérias/análise , Proteínas de Bactérias/química , Composição de Bases , Meios de Cultura , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/análise , DNA Ribossômico/genética , Eletroforese em Gel de Poliacrilamida , Ácidos Graxos/análise , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Hibridização de Ácido Nucleico/métodos , Fenótipo , RNA Ribossômico 16S/genética , Mapeamento por Restrição , Análise de Sequência de DNA
19.
J Exp Bot ; 51(347): 1107-15, 2000 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-10948238

RESUMO

The protective functions that have been ascribed to anthocyanins in leaves can be performed as effectively by a number of other compounds. The possibility that anthocyanins accumulate most abundantly in leaves deficient in other phytoprotective pigments has been tested. Pigment concentrations and their histological distribution were surveyed for a sample of 1000 leaves from a forest population of Quintinia serrata, which displays natural polymorphism in leaf colour. Eight leaf phenotypes were recognized according to their patterns of red coloration. Anthocyanins were observed in almost all combinations of every leaf tissue, but were most commonly located in the vacuoles of photosynthetic cells. Red leaves contained two anthocyanins (Cy-3-glc and Cy-3-gal), epicuticular flavones, epidermal flavonols, hydroxycinnamic acids, chlorophylls, and carotenoids. Green leaves lacked anthocyanins, but had otherwise similar pigment profiles. Foliar anthocyanin levels varied significantly between branches and among trees, but were not correlated to concentrations of other pigments. Anthocyanins were most abundant in older leaves on trees under canopies with south-facing gaps. These data indicate that anthocyanins are associated with photosynthesis, but do not serve an auxiliary phytoprotective role. They may serve to protect shade-adapted chloroplasts from brief exposure to high intensity sunflecks.


Assuntos
Antocianinas/química , Fotossíntese , Árvores/química , Cloroplastos/fisiologia , Cromatografia Líquida de Alta Pressão , Flavonoides/análise , Flavonoides/isolamento & purificação , Folhas de Planta/anatomia & histologia , Folhas de Planta/química , Folhas de Planta/fisiologia , Árvores/anatomia & histologia , Árvores/fisiologia
20.
J Mol Biol ; 302(1): 103-20, 2000 Sep 08.
Artigo em Inglês | MEDLINE | ID: mdl-10964564

RESUMO

The Saccharomyces cerevisiae gene YPA1 encodes a protein homologous to the phosphotyrosyl phosphatase activator, PTPA, of the mammalian protein phosphatase type 2A (PP2A). In order to examine the biological role of PTPA, we disrupted YPA1 and characterised the phenotype of the ypa1Delta mutant. Comparison of the growth rate of the wild-type strain and the ypa1Delta mutant on glucose-rich medium after nutrient depletion showed that the ypa1Delta mutant traversed the lag period more rapidly. This accelerated progression through "Start" was also observed after release from alpha-factor-induced G1 arrest as evidenced by a higher number of budding cells, a faster increase in CLN2 mRNA expression and a more rapid reactivation of Cdc28 kinase activity. This phenotype was specific for deletion of YPA1 since it was not observed when YPA2, the second PTPA gene in budding yeast was deleted. Reintroduction of YPA1 or the human PTPA cDNA in the ypa1Delta mutant suppressed this phenotype as opposed to overexpression of YPA2. Disruption of both YPA genes is lethal, since sporulation of heterozygous diploids resulted in at most three viable spores, none of them with a ypa1Delta ypa2Delta genotype. This observation indicates that YPA1 and YPA2 share some essential functions. We compared the ypa1Delta mutant phenotype with a PP2A double deletion mutant and a PP2A temperature-sensitive mutant. The PP2A-deficient yeast strain also showed accelerated progression through the G1 phase. In addition, both PP2A and ypa1Delta mutants show similar aberrant bud morphology. This would support the notion that YPA1 may act as a positive regulator of PP2A in vivo.


Assuntos
Ciclo Celular , Proteínas/metabolismo , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/citologia , Saccharomyces cerevisiae/enzimologia , Proteína Quinase CDC28 de Saccharomyces cerevisiae/metabolismo , Ciclo Celular/efeitos dos fármacos , Ciclinas/genética , Citometria de Fluxo , Proteínas Fúngicas/genética , Fase G1/efeitos dos fármacos , Deleção de Genes , Regulação Fúngica da Expressão Gênica/efeitos dos fármacos , Genes Fúngicos/genética , Glucose/metabolismo , Humanos , Peptídeos e Proteínas de Sinalização Intracelular , Cinética , Fator de Acasalamento , Meiose/efeitos dos fármacos , Proteínas de Membrana , Peptídeos/farmacologia , Peptidilprolil Isomerase , Fenótipo , Fosfoproteínas Fosfatases/genética , Fosfoproteínas Fosfatases/metabolismo , Proteína Fosfatase 2 , Proteínas/genética , RNA Fúngico/análise , RNA Fúngico/genética , Saccharomyces cerevisiae/efeitos dos fármacos , Saccharomyces cerevisiae/genética , Transdução de Sinais/efeitos dos fármacos , Sirolimo/farmacologia , Esporos Fúngicos/citologia , Esporos Fúngicos/efeitos dos fármacos , Esporos Fúngicos/enzimologia , Esporos Fúngicos/metabolismo , Temperatura , Tripeptidil-Peptidase 1
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