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1.
J Proteomics ; 136: 133-44, 2016 Mar 16.
Artigo em Inglês | MEDLINE | ID: mdl-26778142

RESUMO

UNLABELLED: The sea urchin endoskeleton consists of a magnesium-rich biocalcite comprising a small amount of occluded organic macromolecules. This structure constitutes a key-model for understanding the mineral--organics interplay, and for conceiving in vitro bio-inspired materials with tailored properties. Here we employed a deep-clean technique to purify the occluded proteins from adult Paracentrotus lividus tests. We characterized them by 1- and 2D-electrophoreses, ELISA and immunoblotting, and using liquid chromatography coupled with Mass Spectrometry (nanoLC-MS/MS), we identified two metalloenzymes (carbonic anhydrase and MMP), a set of MSP130 family members, several C-type lectins (SM29, SM41, PM27) and cytoskeletal proteins. We demonstrate the effect of the protein extract on the crystals, with an in vitro crystallization assay. We suggest that this small set of biomineralization proteins may represent a 'minimal molecular crystallization toolkit'. SIGNIFICANCE: Biominerals often exhibit superior chemical properties, when compared to their inorganic counterparts. This is due pro parte to the proteins that are occluded in the mineral. However, the limited available studies on biomineralization have not yet succeeded in identifying a minimal set of proteins directly involved in the formation of the biomineral in vivo and sufficiently required for in vitro precipitation. Indeed, the high number of proteins identified by high-throughput screening in the recent years does not encourage the possibility of recreating or tailoring the mineral in vitro. Thus, the identification of biomineralization proteins involved in protein-mineral interactions is highly awaited. In the present study, we used the sea urchin, Paracentrotus lividus (P. lividus), to identify the native proteins directly taking part in protein-mineral interactions. We employed an improved deep-clean technique to extract and purify the native occluded skeletal matrix proteins from the test and identified them by the highly sensitive technique of nanoLC-MS/MS. We show that this minimal set of proteins has a shaping effect on the formation of biocalcite in vitro. This work gives insights on the biomineralization of the sea urchin, while it paves the way for the identification of biomineralization proteins in other biomineralizing systems. Understanding the 'biologically controlled mineralization' will facilitate the in vitro formation and tailoring of biominerals in mild conditions for applications in medicine and materials science.


Assuntos
Proteínas da Matriz Extracelular/metabolismo , Matriz Extracelular/metabolismo , Paracentrotus/metabolismo , Proteômica/métodos , Animais , Espectrometria de Massas
2.
J Struct Biol ; 190(3): 360-6, 2015 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-25896726

RESUMO

Brachiopods are a phylum of marine invertebrates that have an external bivalved shell to protect their living tissues. With few exceptions, this biomineralized structure is composed of calcite, mixed together with a minor organic fraction, comprising secreted proteins that become occluded in the shell structure, once formed. This organic matrix is thought to display several functions, in particular, to control mineral deposition and to regulate crystallite shapes. Thus, identifying the primary structure of matrix proteins is a prerequisite for generating bioinspired materials with tailored properties. In this study, we employed a proteomic approach to identify numerous peptides that constitute the shell proteins, in three rhynchonellid brachiopods from different localities. Our results suggest that the shell protein repertoires identified thus far, differ from that of better known calcifying metazoans, such as molluscs.


Assuntos
Exoesqueleto/metabolismo , Invertebrados/metabolismo , Proteoma/química , Proteoma/metabolismo , Animais , Calcificação Fisiológica/fisiologia , Carbonato de Cálcio/química , Minerais/metabolismo , Peptídeos/química , Peptídeos/metabolismo , Proteômica/métodos
3.
FEBS J ; 282(10): 1891-905, 2015 May.
Artigo em Inglês | MEDLINE | ID: mdl-25702947

RESUMO

Calcified structures of sea urchins are biocomposite materials that comprise a minor fraction of organic macromolecules, such as proteins, glycoproteins and polysaccharides. These macromolecules are thought to collectively regulate mineral deposition during the process of calcification. When occluded, they modify the properties of the mineral. In the present study, the organic matrices (both soluble and insoluble in acetic acid) of spines and tests from the Mediterranean black sea urchin Arbacia lixula were extracted and characterized, in order to determine whether they exhibit similar biochemical signatures. Bulk characterizations were performed by mono-dimensional SDS/PAGE, FT-IR spectroscopy, and an in vitro crystallization assay. We concentrated our efforts on characterization of the sugar moieties. To this end, we determined the monosaccharide content of the soluble and insoluble organic matrices of A. lixula spines and tests by HPAE-PAD, together with their respective lectin-binding profiles via enzyme-linked lectin assay. Finally, we performed in situ localization of N-acetyl glucosamine-containing saccharides on spines and tests using gold-conjugated wheatgerm agglutinin. Our data show that the test and spine matrices exhibit different biochemical signatures with regard to their saccharidic fraction, suggesting that future studies should analyse the regulation of mineral deposition by the matrix in these two mineralized structures in detail. This study re-emphasizes the importance of non-protein moieties, i.e. sugars, in calcium carbonate systems, and highlights the need to clearly identify their function in the biomineralization process.


Assuntos
Aglutininas/metabolismo , Arbacia/metabolismo , Carbonato de Cálcio/metabolismo , Animais , Eletroforese em Gel de Poliacrilamida , Mar Mediterrâneo , Microscopia Eletrônica de Varredura , Ouriços-do-Mar/metabolismo , Espectroscopia de Infravermelho com Transformada de Fourier
4.
Artigo em Inglês | MEDLINE | ID: mdl-25617706

RESUMO

In the field of biomineralization, the past decade has been marked by the increasing use of high throughput techniques, i.e. proteomics, for identifying in one shot the protein content of complex macromolecular mixtures extracted from mineralized tissues. Although crowned with success, this approach has been restricted so far to a limited set of key-organisms, such as the purple sea urchin Strongylocentrotus purpuratus, the pearl oyster or the abalone, leaving in the shadow non-model organisms. As a consequence, it is still unknown to what extent the calcifying repertoire varies, from group to group, at high (phylum, class), median (order, family) or low (genus, species) taxonomic rank. The present paper shows the first biochemical and proteomic characterization of the test matrix of the Mediterranean black sea urchin Arbacia lixula (Arbacioida). Our work suggests that the skeletal repertoire of A. lixula exhibits some similarities but also several differences with that of the few sea urchin species (S. purpuratus, Paracentrotus lividus), for which molecular data are already available. The differences may be attributable to the taxonomic position of the species considered: A. lixula belongs to an order - Arbacioida - that diverged more than one hundred million years ago from the Camarodonta, which includes the two species S. purpuratus and P. lividus. For the echinoid class, we suggest that large-scale proteomic screening should be performed in order to understand which molecular functions related to calcification are conserved and which ones have been co-opted for biomineralization in particular lineages.


Assuntos
Ouriços-do-Mar/anatomia & histologia , Sequência de Aminoácidos , Animais , Carbonato de Cálcio/metabolismo , Eletroforese em Gel de Poliacrilamida/métodos , Espectrometria de Massas , Microscopia Eletrônica de Varredura , Minerais/metabolismo , Dados de Sequência Molecular , Monossacarídeos/metabolismo , Proteômica , Espectroscopia de Infravermelho com Transformada de Fourier
5.
PLoS One ; 9(6): e97454, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24893046

RESUMO

The scleractinian coral Acropora millepora is one of the most studied species from the Great Barrier Reef. This species has been used to understand evolutionary, immune and developmental processes in cnidarians. It has also been subject of several ecological studies in order to elucidate reef responses to environmental changes such as temperature rise and ocean acidification (OA). In these contexts, several nucleic acid resources were made available. When combined to a recent proteomic analysis of the coral skeletal organic matrix (SOM), they enabled the identification of several skeletal matrix proteins, making A. millepora into an emerging model for biomineralization studies. Here we describe the skeletal microstructure of A. millepora skeleton, together with a functional and biochemical characterization of its occluded SOM that focuses on the protein and saccharidic moieties. The skeletal matrix proteins show a large range of isoelectric points, compositional patterns and signatures. Besides secreted proteins, there are a significant number of proteins with membrane attachment sites such as transmembrane domains and GPI anchors as well as proteins with integrin binding sites. These features show that the skeletal proteins must have strong adhesion properties in order to function in the calcifying space. Moreover this data suggest a molecular connection between the calcifying epithelium and the skeletal tissue during biocalcification. In terms of sugar moieties, the enrichment of the SOM in arabinose is striking, and the monosaccharide composition exhibits the same signature as that of mucus of acroporid corals. Finally, we observe that the interaction of the acetic acid soluble SOM on the morphology of in vitro grown CaCO3 crystals is very pronounced when compared with the calcifying matrices of some mollusks. In light of these results, we wish to commend Acropora millepora as a model for biocalcification studies in scleractinians, from molecular and structural viewpoints.


Assuntos
Antozoários/anatomia & histologia , Antozoários/metabolismo , Osso e Ossos/anatomia & histologia , Osso e Ossos/metabolismo , Ácido Acético/farmacologia , Aminação/efeitos dos fármacos , Animais , Antozoários/efeitos dos fármacos , Antozoários/ultraestrutura , Osso e Ossos/efeitos dos fármacos , Osso e Ossos/ultraestrutura , Carbonato de Cálcio/metabolismo , Cristalização , Géis , Monossacarídeos/análise , Proteínas/metabolismo , Solubilidade , Espectroscopia de Infravermelho com Transformada de Fourier , Análise Espectral Raman
6.
J Biomed Opt ; 19(11): 111603, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24839943

RESUMO

Dermatologists need to combine different clinically relevant characteristics for a better understanding of skin health. These characteristics are usually measured by different techniques, and some of them are highly time consuming. Therefore, a predicting model based on Raman spectroscopy and partial least square (PLS) regression was developed as a rapid multiparametric method. The Raman spectra collected from the five uppermost micrometers of 11 healthy volunteers were fitted to different skin characteristics measured by independent appropriate methods (transepidermal water loss, hydration, pH, relative amount of ceramides, fatty acids, and cholesterol). For each parameter, the obtained PLS model presented correlation coefficients higher than R2=0.9. This model enables us to obtain all the aforementioned parameters directly from the unique Raman signature. In addition to that, in-depth Raman analyses down to 20 µm showed different balances between partially bound water and unbound water with depth. In parallel, the increase of depth was followed by an unfolding process of the proteins. The combinations of all these information led to a multiparametric investigation, which better characterizes the skin status. Raman signal can thus be used as a quick response code (QR code). This could help dermatologic diagnosis of physiological variations and presents a possible extension to pathological characterization.


Assuntos
Fenômenos Fisiológicos da Pele , Pele/química , Análise Espectral Raman/métodos , Idoso , Feminino , Humanos , Análise dos Mínimos Quadrados , Lipídeos/análise , Pessoa de Meia-Idade , Dobramento de Proteína
7.
Artigo em Inglês | MEDLINE | ID: mdl-24291423

RESUMO

In molluscs, the shell organic matrix comprises a large set of biomineral-occluded proteins, glycoproteins and polysaccharides that are secreted by the calcifying mantle epithelium, and are supposed to display several functions related to the synthesis of the shell. In the present paper, we have characterized biochemically the shell matrix associated to the crossed-lamellar structure of the giant queen conch Strombus gigas. The acid-soluble (ASM) and acid-insoluble (AIM) matrices represent an extremely minor fraction of the shell. Both are constituted of polydisperse and of few discrete proteins among which three fractions, obtained by preparative SDS-PAGE and named 1P3, 2P3 and 3P3, are dominant and were further characterized. Compared to other matrices, the acid-soluble matrix is weakly glycosylated (3%) and among the discrete components, only 3P3 seems noticeably glycosylated. The monosaccharide composition of the ASM shows that mannose represents the main monosaccharide. To our knowledge, this is the first report of a high ratio of this sugar in a skeletal matrix. Furthermore, the ASM interacts with the in vitro crystallization of calcium carbonate, but this interaction is moderate. It differs from that of the isolated 1P3 fraction but is similar to that of the 2P3 and 3P3 fractions. At last, antibodies developed from the 3P3 fraction were used to localize this fraction within the shell by immunogold. This study is the first one aiming at characterizing the organic matrix associated to the crossed-lamellar structure of the queen conch shell.


Assuntos
Exoesqueleto/química , Gastrópodes/química , Proteínas/análise , Exoesqueleto/ultraestrutura , Animais , Carbonato de Cálcio/química , Carboidratos/análise , Cristalização , Gastrópodes/ultraestrutura , Glicoproteínas/análise
8.
Mol Biol Evol ; 30(9): 2099-112, 2013 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-23765379

RESUMO

In corals, biocalcification is a major function that may be drastically affected by ocean acidification (OA). Scleractinian corals grow by building up aragonitic exoskeletons that provide support and protection for soft tissues. Although this process has been extensively studied, the molecular basis of biocalcification is poorly understood. Notably lacking is a comprehensive catalog of the skeleton-occluded proteins-the skeletal organic matrix proteins (SOMPs) that are thought to regulate the mineral deposition. Using a combination of proteomics and transcriptomics, we report the first survey of such proteins in the staghorn coral Acropora millepora. The organic matrix (OM) extracted from the coral skeleton was analyzed by mass spectrometry and bioinformatics, enabling the identification of 36 SOMPs. These results provide novel insights into the molecular basis of coral calcification and the macroevolution of metazoan calcifying systems, whereas establishing a platform for studying the impact of OA at molecular level. Besides secreted proteins, extracellular regions of transmembrane proteins are also present, suggesting a close control of aragonite deposition by the calicoblastic epithelium. In addition to the expected SOMPs (Asp/Glu-rich, galaxins), the skeletal repertoire included several proteins containing known extracellular matrix domains. From an evolutionary perspective, the number of coral-specific proteins is low, many SOMPs having counterparts in the noncalcifying cnidarians. Extending the comparison with the skeletal OM proteomes of other metazoans allowed the identification of a pool of functional domains shared between phyla. These data suggest that co-option and domain shuffling may be general mechanisms by which the trait of calcification has evolved.


Assuntos
Antozoários/genética , Calcificação Fisiológica/genética , Evolução Molecular , Filogenia , Proteoma/genética , Sequência de Aminoácidos , Animais , Antozoários/classificação , Antozoários/metabolismo , Carbonato de Cálcio/metabolismo , Matriz Extracelular/química , Espectrometria de Massas , Anotação de Sequência Molecular , Dados de Sequência Molecular , Estrutura Terciária de Proteína , Proteoma/química , Proteoma/classificação , Proteoma/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos
9.
FEBS J ; 280(1): 214-32, 2013 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23145877

RESUMO

Proteins that are occluded within the molluscan shell, the so-called shell matrix proteins (SMPs), are an assemblage of biomolecules attractive to study for several reasons. They increase the fracture resistance of the shell by several orders of magnitude, determine the polymorph of CaCO(3) deposited, and regulate crystal nucleation, growth initiation and termination. In addition, they are thought to control the shell microstructures. Understanding how these proteins have evolved is also likely to provide deep insight into events that supported the diversification and expansion of metazoan life during the Cambrian radiation 543 million years ago. Here, we present an analysis of SMPs isolated form the CaCO(3) shell of the limpet Lottia gigantea, a gastropod that constructs an aragonitic cross-lamellar shell. We identified 39 SMPs by combining proteomic analysis with genomic and transcriptomic database interrogations. Among these proteins are various low-complexity domain-containing proteins, enzymes such as peroxidases, carbonic anhydrases and chitinases, acidic calcium-binding proteins and protease inhibitors. This list is likely to contain the most abundant SMPs of the shell matrix. It reveals the presence of both highly conserved and lineage-specific biomineralizing proteins. This mosaic evolutionary pattern suggests that there may be an ancestral molluscan SMP set upon which different conchiferan lineages have elaborated to produce the diversity of shell microstructures we observe nowadays.


Assuntos
Exoesqueleto/metabolismo , Gastrópodes/metabolismo , Proteoma/metabolismo , Sequência de Aminoácidos , Exoesqueleto/enzimologia , Exoesqueleto/ultraestrutura , Animais , Anidrases Carbônicas/química , Anidrases Carbônicas/isolamento & purificação , Anidrases Carbônicas/metabolismo , Ciclofilinas/isolamento & purificação , Ciclofilinas/metabolismo , Eletroforese em Gel de Poliacrilamida , Fator de Crescimento Epidérmico/química , Fator de Crescimento Epidérmico/isolamento & purificação , Fator de Crescimento Epidérmico/metabolismo , Proteínas da Matriz Extracelular/química , Proteínas da Matriz Extracelular/isolamento & purificação , Proteínas da Matriz Extracelular/metabolismo , Glicosídeo Hidrolases/isolamento & purificação , Glicosídeo Hidrolases/metabolismo , Dados de Sequência Molecular , Fragmentos de Peptídeos/química , Peroxidases/química , Peroxidases/isolamento & purificação , Peroxidases/metabolismo , Estrutura Terciária de Proteína , Proteoma/química , Proteoma/isolamento & purificação , Análise de Sequência de Proteína , Homologia de Sequência de Aminoácidos , Espectrometria de Massas em Tandem
10.
J Exp Zool B Mol Dev Evol ; 318(5): 353-67, 2012 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-22711568

RESUMO

Carbonic anhydrases (CAs) represent a diversified family of metalloenzymes that reversibly catalyze the hydration of carbon dioxide. They are involved in a wide range of functions, among which is the formation of CaCO(3) skeletons in metazoans. In the shell-forming mantle tissues of mollusks, the location of the CA catalytic activity is elusive and gives birth to contradicting views. In the present paper, using the European abalone Haliotis tuberculata, a key model gastropod in biomineralization studies, we identified and characterized two CAs (htCA1 and htCA2) that are specific of the shell-forming mantle tissue. We analyzed them in a phylogenetic context. Combining various approaches, including proteomics, activity tests, and in silico analyses, we showed that htCA1 is secreted but is not incorporated in the organic matrix of the abalone shell and that htCA2 is transmembrane. Together with previous studies dealing with molluskan CAs, our findings suggest two possible modes of action for shell mineralization: the first mode applies to, for example, the bivalves Unio pictorum and Pinctada fucata, and involves a true CA activity in their shell matrix; the second mode corresponds to, for example, the European abalone, and does not include CA activity in the shell matrix. Our work provides new insight on the diversity of the extracellular macromolecular tools used for shell biomineralization study in mollusks.


Assuntos
Exoesqueleto/enzimologia , Calcificação Fisiológica/fisiologia , Anidrases Carbônicas/genética , Gastrópodes/enzimologia , Modelos Biológicos , Filogenia , Animais , Sequência de Bases , Calcificação Fisiológica/genética , Clonagem Molecular , Primers do DNA/genética , DNA Complementar/genética , Eletroforese em Gel de Poliacrilamida , Gastrópodes/genética , Funções Verossimilhança , Modelos Genéticos , Dados de Sequência Molecular , Reação em Cadeia da Polimerase , Proteômica , Reação em Cadeia da Polimerase em Tempo Real , Análise de Sequência de DNA , Especificidade da Espécie
11.
Chembiochem ; 13(7): 1067-78, 2012 May 07.
Artigo em Inglês | MEDLINE | ID: mdl-22474002

RESUMO

The formation of the molluskan shell is regulated by an array of extracellular proteins secreted by the calcifying epithelial cells of the mantle. These proteins remain occluded within the recently formed biominerals. To date, many shell proteins have been retrieved, but only a few of them, such as nacreins, have clearly identified functions. In this particular case, by combining molecular biology and biochemical approaches, we performed the molecular characterization of a novel protein that we named Upsalin, associated with the nacreous shell of the freshwater mussel Unio pictorum. The full sequence of the upsalin transcript was obtained by RT-PCR and 5'/3' RACE, and the expression pattern of the transcript was studied by PCR and qPCR. Upsalin is a 12 kDa protein with a basic theoretical pI. The presence of Upsalin in the shell was demonstrated by extraction of the acetic-acid-soluble nacre matrix, purification of a shell protein fraction by mono-dimensional preparative SDS-PAGE, and by submitting this fraction, after trypsic digestion, to nano-LC-MS/MS. In vitro experiments with the purified protein showed that it interferes poorly with the precipitation of calcium carbonate. Homology searches also could not affiliate Upsalin to any other protein of known function, leaving open the question of its exact role in shell formation. An antibody raised against an immunogenic peptide of Upsalin was found to be specific to this protein and was subsequently assayed for immunogold localization of the target protein in the shell, revealing the ubiquitous presence of Upsalin in the nacreous and prismatic layers. Recently, with the application of high-throughput proteomic studies to shells, the number of candidate proteins without clear functions has been increasing exponentially. The Upsalin example highlights the crucial need, for the scientific community dealing with biomineralization in general, to dedicate the coming years to designing experimental approaches, such as gene silencing, that focus on the functions of mineral-associated proteins.


Assuntos
Minerais/química , Minerais/metabolismo , Proteínas/química , Proteínas/metabolismo , Sequência de Aminoácidos , Animais , Sequência de Bases , Eletroforese , Microscopia Eletrônica de Varredura , Dados de Sequência Molecular , Moluscos , Proteômica/métodos
12.
Hum Psychopharmacol ; 27(3): 270-6, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22350925

RESUMO

OBJECTIVES: A prolonged-release formulation of melatonin (PR-M) is indicated for insomnia in patients aged 55 years and older. Because hypnotics result in impairments of body sway, it was important to evaluate the effect of 2 mg PR-M on postural stability in older adults at night. METHODS: Twenty-four healthy volunteers (12 women, 12 men, aged 55-64 years) completed a randomized, double-blind, single-dose, three-way crossover study of postural stability of PR-M 2 mg, zolpidem 10 mg (active control) or placebo. Subjects were tested for body sway 30 min before, 1.5 and 4 h after dosing. Parameters tested were the area of the 95% confidence ellipse enclosing the center of pressure (COP; [A95]) and COP path length. RESULTS: Zolpidem significantly increased the A95 (both eyes conditions at all time points) and path length of COP. PR-M had no effect on A95 (both "eyes closed" and "eyes open" conditions at all time points) compared with placebo and increased COP path length by 10% at 4 h post-dose in open but not closed eyes condition. No serious adverse events were observed. CONCLUSIONS: In older adults, evening PR-M intake did not impair postural stability during the night. The postural instability with zolpidem demonstrated assay sensitivity and validated the outcome.


Assuntos
Antioxidantes/administração & dosagem , Sistemas de Liberação de Medicamentos/métodos , Hipnóticos e Sedativos/farmacologia , Melatonina/administração & dosagem , Equilíbrio Postural/efeitos dos fármacos , Piridinas/farmacologia , Análise de Variância , Estudos Cross-Over , Método Duplo-Cego , Feminino , Seguimentos , Humanos , Masculino , Pessoa de Meia-Idade , Fatores de Tempo , Zolpidem
13.
Comp Biochem Physiol B Biochem Mol Biol ; 161(4): 303-14, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22198121

RESUMO

In mollusks, the shell mineralization process is controlled by an array of proteins, glycoproteins and polysaccharides that collectively constitute the shell matrix. In spite of numerous researches, the shell protein content of a limited number of model species has been investigated. This paper presents biochemical data on the common edible land snail Helix aspersa maxima, a model organism for ecotoxicological purposes, which has however been poorly investigated from a biomineralization viewpoint. The shell matrix of this species was extracted and analyzed biochemically for functional in vitro inhibition assay, for amino acid and monosaccharides compositions. The matrix was further analyzed on 1 and 2D gels and short partial protein sequences were obtained from 2D gel spots. Serological comparisons were established with a set of heterologous antibodies, two of which were subsequently used for subsequent immunogold localization of matrix components. Our data suggest that the shell matrix of Helix aspersa maxima may differ widely from the shell secretory repertoire of the marine mollusks studied so far, such as the gastropod Haliotis or the pearl oyster Pinctada. In particular, most of the biochemical properties generally attributed to soluble shell matrices, such as calcium-binding capability, or the capacity to interfere in vitro with the precipitation of calcium carbonate or to inhibit the precipitation of calcium carbonate, were not recorded with this matrix. This drastic change in the biochemical properties of the landsnail shell matrix puts into question the existence of a unique molecular model for molluscan shell formation, and may be related to terrestrialisation.


Assuntos
Exoesqueleto/química , Caracois Helix/química , Proteínas/análise , Aminoácidos/análise , Exoesqueleto/ultraestrutura , Animais , Carbonato de Cálcio/química , Eletroforese em Gel Bidimensional , Eletroforese em Gel de Poliacrilamida , França , Imuno-Histoquímica , Microscopia Eletrônica de Varredura , Monossacarídeos/análise , Especificidade da Espécie , Espectrometria de Massas em Tandem , Difração de Raios X
14.
Biomolecules ; 3(1): 18-38, 2012 Dec 21.
Artigo em Inglês | MEDLINE | ID: mdl-24970155

RESUMO

Crustaceans have to cyclically replace their rigid exoskeleton in order to grow. Most of them harden this skeleton by a calcification process. Some decapods (land crabs, lobsters and crayfish) elaborate calcium storage structures as a reservoir of calcium ions in their stomach wall, as so-called gastroliths. For a better understanding of the cyclic elaboration of these calcium deposits, we studied the ultrastructure of gastroliths from freshwater crayfish by using a combination of microscopic and physical techniques. Because sugars are also molecules putatively involved in the elaboration process of these biomineralizations, we also determined their carbohydrate composition. This study was performed in a comparative perspective on crayfish species belonging to the infra-order Astacidea (Decapoda, Malacostraca): three species from the Astacoidea superfamily and one species from the Parastacoidea superfamily. We observed that all the gastroliths exhibit a similar dense network of protein-chitin fibers, from macro- to nanoscale, within which calcium is precipitated as amorphous calcium carbonate. Nevertheless, they are not very similar at the molecular level, notably as regards their carbohydrate composition. Besides glucosamine, the basic carbohydrate component of chitin, we evidenced the presence of other sugars, some of which are species-specific like rhamnose and galacturonic acid whereas xylose and mannose could be linked to proteoglycan components.

15.
Mar Biotechnol (NY) ; 13(6): 1159-68, 2011 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-21537946

RESUMO

The shell of the Pacific oyster Crassostrea gigas is composed of more than 99% CaCO3 and of around 0.5% of occluded organic matrix. According to classical views, this matrix is supposed to regulate the shell mineral deposition. In this study, we developed one of the first proteomic approaches applied to mollusk shell in order to characterise the calcifying matrix proteins. The insoluble organic matrix, purified after demineralisation of the shell powder, was digested with trypsin enzyme, and separated on nano-LC, prior to nanospray quadrupole/time-of-flight analysis. MS/MS spectra were searched against the above 220,000 EST sequences available in the public database for Crassostrea. Using this approach, we were able to identify partial or full-length sequence transcripts that encode eight novel shell matrix proteins.


Assuntos
Exoesqueleto/química , Crassostrea/química , Proteínas/análise , Animais , Cromatografia Líquida , Biologia Computacional , Etiquetas de Sequências Expressas , Biblioteca Gênica , Microscopia Eletrônica de Varredura , Proteômica/métodos , Espectrometria de Massas em Tandem , Tripsina
16.
Mar Biotechnol (NY) ; 13(5): 955-62, 2011 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-21221694

RESUMO

The shell of the Manila clam Venerupis philippinarum is composed of more than 99% calcium carbonate and of a small amount of organic matrix (around 0.2%). In this study, we developed one of the first proteomic approaches applied to mollusc shell in order to characterise the matrix proteins that are believed to be essential for the formation of the biomineral. The insoluble organic matrix, purified after demineralisation of the shell powder with cold acetic acid (5%), was digested with trypsin enzyme and then separated on nano-LC prior to nanospray/quadrupole time-of-flight analysis. MS/MS spectra were searched against the above 11,000 EST sequences available on the NCBI public database for Venerupis. Using this approach, we were able to identify partial or full-length sequence transcripts that encode for shell matrix proteins. These include three novel shell proteins whose sequences do not present any homologous proteins or already described domains, two putative protease inhibitor proteins containing Kazal-type domains, and a putative Ca(2+)-binding protein containing two EF-hand domains. Biomineral formation and evolutionary implications are discussed.


Assuntos
Exoesqueleto/metabolismo , Bivalves/metabolismo , Regulação da Expressão Gênica/fisiologia , Proteínas/metabolismo , Proteômica/métodos , Sequência de Aminoácidos , Animais , Microscopia Eletrônica de Varredura , Proteínas/genética
17.
J Invertebr Pathol ; 106(3): 407-17, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21168415

RESUMO

For more than two decades, the Manila clam Ruditapes philippinarum has been regularly affected by Brown Ring Disease (BRD), an epizootic event caused by the bacterium Vibrio tapetis and characterized by the development of a brown deposit on the inner face of valves. Although BRD infection is often lethal, some clams recover by mineralizing a new repair shell layer, which covers the brown deposit and fully isolates it from living tissues. In order to understand this specific shell repair process, the microstructures of repaired zones were compared to those of shells unaffected by BRD. In addition, the organic matrix associated with unaffected shells and to repair patches were extracted and compared by biochemical and immunological techniques. Our results show that the repaired zones exhibit microstructures that resemble the so-called homogeneous microstructure of the internal layer, with some marked differences, like the development of crossed-acicular crystals, which form chevron-like patterns. In the three tested batches of repaired layers, the matrices exhibit certain heterogeneity, i.e., they are partially to widely different from the ones of shells unaffected by BRD, as illustrated by SDS-PAGE and by serological comparisons. Our results strongly suggest a modification of the secretory regime of calcifying mantle cells during the shell repair process. Polyclonal antibodies, which were developed against specific protein fractions of the shell, represent relevant tools for localizing by immunohistology the cells responsible for the repair.


Assuntos
Bivalves/microbiologia , Vibrio/fisiologia , Animais , Bivalves/fisiologia , Bivalves/ultraestrutura , Eletroforese em Gel de Poliacrilamida , Ensaio de Imunoadsorção Enzimática , Hemolinfa/fisiologia
18.
Chembiochem ; 9(15): 2515-23, 2008 Oct 13.
Artigo em Inglês | MEDLINE | ID: mdl-18810748

RESUMO

The formation of the molluscan shell is finely tuned by macromolecules of the shell organic matrix. Previous results have shown that the acid-soluble fraction of the nacre matrix of the freshwater paleoheterodont bivalve Unio pictorum shell displays a number of remarkable properties, such as calcium-binding activity, the presence of extensive glycosylations and the capacity to interfere at low concentration with in vitro calcium carbonate precipitation. Here we have found that the nacre-soluble matrix exhibits a carbonic anhydrase activity, an important function in calcification processes. This matrix is composed of three main proteinaceous discrete fractions. The one with the highest apparent molecular weight is a 95 kDa glycoprotein that is specific to the nacreous layer. P95, as it is provisionally named, is enriched in Gly, Glx and Asx and exhibits an apparent pI value of approximately 4, or approximately 7 when chemically deglycosylated. Furthermore, its glycosyl moiety, consisting of sulfated polysaccharides, is involved in calcium binding. Purified fractions of the three main proteins were digested with trypsin, and the resulting peptides were analysed by mass spectrometry. Our results suggest that identical peptides are constitutive domains of the different proteins. Partial primary structures were obtained by de novo sequencing and compared with known sequences from other mollusc shell proteins. Our results are discussed from an evolutionary viewpoint.


Assuntos
Bivalves/anatomia & histologia , Bivalves/metabolismo , Proteínas de Ligação ao Cálcio/metabolismo , Cálcio/metabolismo , Anidrases Carbônicas/metabolismo , Água Doce , Glicoproteínas/metabolismo , Sequência de Aminoácidos , Animais , Bivalves/classificação , Bivalves/enzimologia , Calcificação Fisiológica , Proteínas de Ligação ao Cálcio/isolamento & purificação , Carbonatos , Ativação Enzimática , Géis , Glicoproteínas/isolamento & purificação , Espectrometria de Massas , Microscopia Eletrônica de Varredura , Peso Molecular , Proteômica , Análise de Sequência , Solubilidade
19.
FEBS J ; 274(11): 2933-45, 2007 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-17488282

RESUMO

Among molluscs, the shell biomineralization process is controlled by a set of extracellular macromolecular components secreted by the calcifying mantle. In spite of several studies, these components are mainly known in bivalves from only few members of pteriomorph groups. In the present case, we investigated the biochemical properties of the aragonitic shell of the freshwater bivalve Unio pictorum (Paleoheterodonta, Unionoida). Analysis of the amino acid composition reveals a high amount of glycine, aspartate and alanine in the acid-soluble extract, whereas the acid-insoluble one is rich in alanine and glycine. Monosaccharidic analysis indicates that the insoluble matrix comprises a high amount of glucosamine. Furthermore, a high ratio of the carbohydrates of the soluble matrix is sulfated. Electrophoretic analysis of the acid-soluble matrix revealed discrete bands. Stains-All, Alcian Blue, periodic acid/Schiff and autoradiography with (45)Ca after electrophoretic separation revealed three major polyanionic calcium-binding glycoproteins, which exhibit an apparent molecular mass of 95, 50 and 29 kDa, respectively. Two-dimensional gel electrophoresis shows that these bands, provisionally named P95, P50 and P29, are composed of numerous isoforms, the majority of which have acidic isoelectric points. Chemical deglycosylation of the matrix with trifluoromethanesulfonic acid induces a drastic shift of both the apparent molecular mass and the isoelectric point of these matrix components. This treatment induces also a modification of the shape of CaCO(3) crystals grown in vitro and a loss of the calcium-binding ability of two of the main matrix proteins (P95 and P50). Our findings strongly suggest that post-translational modifications display important functions in mollusc shell calcification.


Assuntos
Bivalves/química , Calcificação Fisiológica , Matriz Extracelular/química , Glicoproteínas/fisiologia , Polissacarídeos/fisiologia , Aminoácidos/análise , Animais , Carboidratos/análise , Eletroforese em Gel Bidimensional , Eletroforese em Gel de Poliacrilamida , Matriz Extracelular/fisiologia , Água Doce , Espectroscopia de Infravermelho com Transformada de Fourier
20.
Environ Sci Technol ; 41(23): 8056-61, 2007 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-18186337

RESUMO

The fate of organic herbicides applied to agricultural fields may be affected by other soil amendments, such as copper applied as a fungicide. The effect of copper on the leaching of diuron and glyphosate through a granitic and a calcareous soil was studied in the laboratory using sieved-soil columns. Each soil was enriched with copper sulfate to obtain soil copper concentrations of 125, 250, 500, and 1000 mg kg(-1). Glyphosate leaching was influenced by soil pH and copper concentration, whereas diuron leaching was not. In the calcareous soil, glyphosate leaching decreased as copper levels increased from 17 mg kg(-1) (background) to 500 mg kg(-1). In the granitic soil, glyphosate leaching increased as copper levels increased from 34 mg kg(-1) (background) to 500 mg kg(-1). The shapes of the copper elution curves in presence of glyphosate were similar to shapes of the glyphosate curves, suggesting the formation of Cu-glyphosate complexes that leach through the soil. Soil copper concentration does not influence diuron leaching. In contrast, increasing copper concentrations reduces glyphosate leaching through calcareous soils, and conversely, increases glyphosate leaching through granitic soils. Our findings suggest that the risk of groundwater contamination by glyphosate increases in granitic soils with elevated copper concentrations.


Assuntos
Cobre/análise , Diurona/análise , Glicina/análogos & derivados , Poluentes do Solo/análise , Solo/análise , Adsorção , Cobre/química , Diurona/química , Interações Medicamentosas , Monitoramento Ambiental/métodos , Glicina/análise , Glicina/química , Herbicidas/análise , Herbicidas/química , Prótons , Poluentes do Solo/química , Glifosato
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