Intermediate soil acidification induces highest nitrous oxide emissions.

Global potent greenhouse gas nitrous oxide (N2O) emissions from soil are accelerating, with increases in the proportion of reactive nitrogen emitted as N2O, i.e., N2O emission factor (EF). Yet, the primary controls and underlying mechanisms of EFs remain unresolved. Based on two independent but complementary global syntheses, and three field studies determining effects of acidity on N2O EFs and soil denitrifying microorganisms, we show that soil pH predominantly controls N2O EFs and emissions by affecting the denitrifier community composition. Analysis of 5438 paired data points of N2O emission fluxes revealed a hump-shaped relationship between soil pH and EFs, with the highest EFs occurring in moderately acidic soils that favored N2O-producing over N2O-consuming microorganisms, and induced high N2O emissions. Our results illustrate that soil pH has a unimodal relationship with soil denitrifiers and EFs, and the net N2O emission depends on both the N2O/(N2O + N2) ratio and overall denitrification rate. These findings can inform strategies to predict and mitigate soil N2O emissions under future nitrogen input scenarios.

Global integrative meta-analysis of the responses in soil organic carbon stock to biochar amendment.

Applying biochar to soil has been recognized as a promising practice of climate-smart agriculture, with considerable potential in enhancing soil organic carbon (SOC) sequestration. Previous studies showed that biochar-induced increases in SOC stock varied substantially among experiments, while the explanatory factors responsible for such variability are still not well assessed. Here, we conducted an integrative meta-analysis of the magnitude and efficiency of biochar-induced change in SOC stock, using a database including 476 field measurements at 101 sites across the globe. Biochar amendment increased SOC stock by 6.13 ± 1.62 (95% confidence interval, CI) and 7.01 ± 1.11 (95% CI) Mg C ha-1, respectively, compared to their unfertilized (R0) and mineral nitrogen (N) fertilized (Rn) references. Of which approx. 52% (R0) and 50% (Rn) were contributed directly by biochar-C input. Corresponding biochar carbon efficiencies in R0 and Rn datasets were estimated as 58.20 ± 10.37% and 65.58 ± 9.26% (95% CI), respectively. The change magnitude of SOC stock increased significantly (p < 0.01) with the increasing amount of biochar-C input, while carbon efficiency of biochar showed an opposite trend. Biochar amendment sequestered larger amounts of SOC with higher efficiency in acidic and loamy soils than in alkaline and sandy soils. Biochar amendments with higher C/N ratio caused higher SOC increase than those with lower C/N ratio. Random forest (RF) algorithm showed that accumulative biochar-C input, soil pH, and biochar C/N ratio were the three most-important factors regulating the SOC stock responses. Overall, these results suggest that applying high C/N ratio biochar in acidic soils is a recommendable agricultural practice from the perspective of enhancing organic carbon.

Fucosyltransferase 5 Promotes the Proliferative and Migratory Properties of Intrahepatic Cholangiocarcinoma Cells via Regulating Protein Glycosylation Profiles.

Background: The incidence of intrahepatic cholangiocarcinoma (ICC) is increasing globally, and its prognosis has not improved substantially in recent years. Understanding the pathogenesis of ICC may provide a theoretical basis for its treatment. In this study, we investigated the effects and underlying mechanisms of fucosyltransferase 5 (FUT5) on the malignant progression of ICC. Methods: FUT5 expression in ICC samples and adjacent nontumor tissues was compared using quantitative real-time polymerase chain reaction and immunohistochemical assays. We performed cell counting kit-8, colony formation, and migration assays to determine whether FUT5 influenced the proliferation and mobility of ICC cells. Finally, mass spectrometry was performed to identify the glycoproteins regulated by FUT5. Results: FUT5 mRNA was significantly upregulated in most ICC samples compared with corresponding adjacent nontumor tissues. The ectopic expression of FUT5 promoted the proliferation and migration of ICC cells, whereas FUT5 knockdown significantly suppressed these cellular properties. Mechanistically, we demonstrated that FUT5 is essential for the synthesis and glycosylation of several proteins, including versican, ß3 integrin, and cystatin 7, which may serve key roles in the precancer effects of FUT5. Conclusions: FUT5 is upregulated in ICC and promotes ICC development by promoting glycosylation of several proteins. Therefore, FUT5 may serve as a therapeutic target for the treatment of ICC.

Understanding the relative contributions of fungi and bacteria led nitrous oxide emissions in an acidic soil amended with industrial waste.

Amendment of fertilized arable soil with alkaline industrial waste has the potential to ameliorate soil acidification whilst also improving crop yield. Another co-benefit is nitrous oxide (N2O) emission abatement but the contribution of fungi and bacteria involved in this process remains unclear. Two incubation experiments were conducted to: 1) examine how amendment of acidic soils with a mixture of phosphorus tailings mixture and insoluble potassium-containing rocks (PT) affect N2O emissions and 2) understand the microbial mechanisms and relative contributions of fungi and bacteria responsible for N2O emissions. In the first incubation experiment, the four treatments consisted of: i) the study control, ii) urea, iii) PT amendment and iv) PT amendment plus urea. Results showed that the PT amendment significantly increased soil pH from 4.8 to above 6.0, and reduced N2O emissions by 65.7%. PT-amended soils had higher N2 emissions and faster O2 consumption. The PT amendment significantly increased extracellular enzyme activities of leucine aminopeptidase and N-Acetyl-ß-glucosaminidase, while it significantly decreased activities of ß-1, 4-glucosidase and ß-cellobiosidase. Two antibiotics (cycloheximide and streptomycin) combined with substrate-induced respiration method were used in the second incubation experiment. Compared to soil with urea, urea with PT amendment raised soil bacteria-related N2O from 9.2% to 18.8% while decreasing fungi-related N2O from 50.5% to 43.2%. These findings suggest that the N2O emissions from acidic soils can be considerably mitigated by the application of alkaline industrial wastes. The contribution of fungi should be considered when designing and applying N2O mitigation strategies in acidic soils. DATA AVAILABILITY: Data will be made available on request.

Magnitude and efficiency of straw return in building up soil organic carbon: A global synthesis integrating the impacts of agricultural managements and environmental conditions.

Enhancing soil organic carbon (SOC) through straw return (SR) has been widely recommended as a promising practice of climate-smart agriculture. Many studies have investigated the relative effect of straw return on SOC content, while the magnitude and efficiency of straw return in building up SOC stock remain uncertain. Here, we present an integrative synthesis of the magnitude and efficiency of SR-induced SOC changes, using a database comprising 327 observations at 115 sites globally. Straw return increased SOC by 3.68 ± 0.69 (95 % Confidence Interval, CI) Mg C ha-1, with a corresponding C efficiency of 20.51 ± 9.58 % (95 % CI), of which <30 % was contributed directly by straw-C input. The magnitude of SR-induced SOC changes increased (P < 0.05) with increasing straw-C input and experiment duration. However, the C efficiency decreased significantly (P < 0.01) with these two explanatory factors. No-tillage and crop rotation were found to enhance the SR-induced SOC increase, in both magnitude and efficiency. Straw return sequestrated larger amount of C in acidic and organic-rich soils than in alkaline and organic-poor soils. A machine learning random forest (RF) algorithm showed that the amount of straw-C input was the most important single factor governing the magnitude and efficiency of straw return. However, local agricultural managements and environmental conditions were together the dominant explanatory factors determining the spatial differences in SR-induced SOC stock changes. This entails that by optimizing agricultural managements in regions with favorable environmental conditions the farmer can accumulate more C with minor negative impacts. By clarifying the significance and relative importance of multiple local factors, our findings may aid the development of tailored region-specific straw return policies integrating the SOC increment and its environmental side costs.

WWP1 upregulation predicts poor prognosis and promotes tumor progression by regulating ubiquitination of NDFIP1 in intrahepatic cholangiocarcinoma.

WW domain-containing E3 ubiquitin protein ligase1 (WWP1) is reported to be upregulated in many types of human cancers; however, its expression and function in intrahepatic cholangiocarcinoma (ICC) remain unknown. Here, in this study we investigated the expression pattern, clinical prognosis, tumor biological functions, and molecular mechanisms of WWP1 in ICC. The expression of WWP1 in patient tissues was detected by western blotting, immunohistochemistry (IHC), and immunofluorescence. CCK-8, colony formation, EdU, transwell, and xenograft models were used to explore the role of WWP1 in the proliferation and metastasis of ICC. Co-immunoprecipitation, mass spectrometry, chromatin immunoprecipitation, and immunofluorescence were performed to detect the potential mechanisms. Our study revealed that WWP1 was highly expressed in ICC, and high levels of WWP1 were associated with poor prognosis. Functionally, WWP1 overexpression enhanced the proliferation and metastasis of ICC cells and vice versa. Mechanistically, MYC could be enriched in the promoter region of WWP1 to facilitate its expression. Then, WWP1 targets Nedd4 family interacting protein1 (NDFIP1) and reduces NDFIP1 protein levels via ubiquitination. Downregulation of NDFIP1 in ICC cells rescued the effects of silenced WWP1 expression. WWP1 expression was also negatively correlated with the protein level of NDFIP1 in patient tissues. In conclusion, WWP1 upregulated by MYC promotes the progression of ICC via ubiquitination of NDFIP1, which reveals that WWP1 might be a potential therapeutic target for ICC.

NKG2D Enhances Double-Negative T Cell Regulation of B Cells.

Numerous studies reported a small subpopulation of TCRαß+CD4-CD8- (double-negative) T cells that exert regulatory functions in the peripheral lymphocyte population. However, the origin of these double-negative T (DNT) cells is controversial. Some researchers reported that DNT cells originated from the thymus, and others argued that these cells are derived from peripheral immune induction. We report a possible mechanism for the induction of nonregulatory CD4+ T cells to become regulatory double-negative T (iDNT) cells in vitro. We found that immature bone marrow dendritic cells (CD86+MHC-II- DCs), rather than mature DCs (CD86+MHC-II+), induced high levels of iDNT cells. The addition of an anti-MHC-II antibody to the CD86+MHC-II+ DC group significantly increased induction. These iDNT cells promoted B cell apoptosis and inhibited B cell proliferation and plasma cell formation. A subgroup of iDNT cells expressed NKG2D. Compared to NKG2D- iDNT cells, NKG2D+ iDNT cells released more granzyme B to enhance B cell regulation. This enhancement may function via NKG2D ligands expressed on B cells following lipopolysaccharide stimulation. These results demonstrate that MHC-II impedes induction, and iDNT cells may be MHC independent. NKG2D expression on iDNT cells enhanced the regulatory function of these cells. Our findings elucidate one possible mechanism of the induction of peripheral immune tolerance and provide a potential treatment for chronic allograft rejection in the future.

Responses of soil organic carbon stock to animal manure application: A new global synthesis integrating the impacts of agricultural managements and environmental conditions.

Enhancing soil organic carbon (SOC) through applying animal manure is of interest for both sustaining cereal production and mitigating greenhouse gas (GHG) emissions. Previous syntheses showed that manuring-induced SOC changes varied substantially with agricultural managements and environmental conditions, while their significance and relative importance to such variability are still largely uncertain. Here, we presented a new synthesis using an updated and balanced database integrating the manuring-induced SOC stock changes and their plausible explanatory factors in 250 observations at global 120 sites. Manure application increased SOC stock by 7.41 ± 1.14 (95% confidence interval, CI) and 8.96 ± 1.83 (95% CI) Mg C ha-1 , respectively, compared to their mineral fertilized (REF-min) and unfertilized (REF-zero) references. Of which approx. 72% and 34% were directly contributed by manure-C input, respectively. Following the IPCC (Intergovernmental Panel on Climate Change) approach, these changes corresponded to the manuring-induced SOC change factors of 1.27 ± 0.04 (95% CI) and 1.40 ± 0.08 (95% CI), respectively. Basing on a balanced database, we identified the amount of manure-C input as the most important factor to the global variations in the resultant SOC stock changes. More importantly, our integrative analysis distinguished the significance of soil properties (e.g., soil pH and initial SOC content) in regulating the efficiency of manure application in enhancing SOC stock. These results indicate that, at the similar rate, applying manure could sequestrate much more carbon in alkaline soils than in neutral and acidic soils. By integrating the impacts of agricultural managements and environmental conditions, our findings would help to develop region-specific tailor-made manure application measures in agriculture and to refine the SOC change factors for regional GHG inventories.

Carbonate loss and resulting CO2 emission from croplands: From incorrect calculations to overestimated predictions.

Recently, Raza et al. (2020) reported the acidification-induced soil carbonate loss and resulting CO2 emission from Chinese croplands. Based on a series of calculations, the authors made scenario analyses on soil carbonate loss and subsequent CO2 emission, under different nitrogen (N) fertilization managements. While we agree with the authors that N-induced acidification accelerates carbonate loss from surface soil, we argue that their predictions are substantially overestimated due to several misconceptions in their calculations.

Soil pH as the chief modifier for regional nitrous oxide emissions: New evidence and implications for global estimates and mitigation.

Nitrous oxide (N2 O) is a greenhouse gas that also plays the primary role in stratospheric ozone depletion. The use of nitrogen fertilizers is known as the major reason for atmospheric N2 O increase. Empirical bottom-up models therefore estimate agricultural N2 O inventories using N loading as the sole predictor, disregarding the regional heterogeneities in soil inherent response to external N loading. Several environmental factors have been found to influence the response in soil N2 O emission to N fertilization, but their interdependence and relative importance have not been addressed properly. Here, we show that soil pH is the chief factor explaining regional disparities in N2 O emission, using a global meta-analysis of 1,104 field measurements. The emission factor (EF) of N2 O increases significantly (p < .001) with soil pH decrease. The default EF value of 1.0%, according to IPCC (Intergovernmental Panel on Climate Change) for agricultural soils, occurs at soil pH 6.76. Moreover, changes in EF with N fertilization (i.e. ΔEF) is also negatively correlated (p < .001) with soil pH. This indicates that N2 O emission in acidic soils is more sensitive to changing N fertilization than that in alkaline soils. Incorporating our findings into bottom-up models has significant consequences for regional and global N2 O emission inventories and reconciling them with those from top-down models. Moreover, our results allow region-specific development of tailor-made N2 O mitigation measures in agriculture.

Abiotic nitrate loss and nitrogenous trace gas emission from Chinese acidic forest soils.

There are an increasing number of studies, which have shown the potential importance of abiotic denitrification in nitrogen biogeochemistry through pure chemical coupling between nitrate/nitrite reduction and Fe(II) oxidation. However, there is little direct evidence showing the environmental significance of abiotic nitrate (NO3-) reduction in acidic soils. We assessed the magnitude and gaseous product stoichiometry of abiotic nitrate reduction in acidic forest soils based on sterilized anoxic soil incubations at different soil pHs and nitrate loadings. The results showed that 24.9, 53.4, and 88.7% of added nitrate (70 mg N kg-1) were lost during 15 days incubation at pHs 3.9, 4.8, and 5.6, respectively. Nitrous oxide (N2O) was found as the dominant gaseous product of abiotic nitrate reduction, accounting for 5.0, 28.9, and 47.9% of nitrate losses at three pH levels, respectively. Minor but clear NO accumulations were observed for all nitrate-amended treatments, with the maxima at intermediate pH 4.8. The percentage of NO increased significantly with soil pH decline, leading to a negative correlation between NO/N2O ratio and soil pH. Though saturations were found under excessive nitrogen loading (i.e., 140 mg N kg-1), we still pose that abiotic nitrate reduction may represent a potentially important pathway for nitrate loss from acidic forest soils receiving nitrogen deposition. Our results here highlight the importance of abiotic nitrate reduction in the soil nitrogen cycle, with special relevance to nitrate removal and nitrogenous trace gas (NO and N2O) emissions from acidic soils.

Anthropogenically enhanced chemical weathering and carbon evasion in the Yangtze Basin.

Chemical weathering is a fundamental geochemical process regulating the atmosphere-land-ocean fluxes and earth's climate. It is under natural conditions driven primarily by weak carbonic acid that originates from atmosphere CO2 or soil respiration. Chemical weathering is therefore assumed as positively coupled with its CO2 consumption in contemporary geochemistry. Strong acids (i.e. sulfuric- and nitric acid) from anthropogenic sources have been found to influence the weathering rate and CO2 consumption, but their integrated effects remain absent in the world largest river basins. By interpreting the water chemistry and overall proton budget in the Yangtze Basin, we found that anthropogenic acidification had enhanced the chemical weathering by 40% during the past three decades, leading to an increase of 30% in solute discharged to the ocean. Moreover, substitution of carbonic acid by strong acids increased inorganic carbon evasion, offsetting 30% of the CO2 consumption by carbonic weathering. Our assessments show that anthropogenic loadings of sulfuric and nitrogen compounds accelerate chemical weathering but lower its CO2 sequestration. These findings have significant relevance to improving our contemporary global biogeochemical budgets.

Altitudinal trends of leaf delta(13)C follow different patterns across a mountainous terrain in north China characterized by a temperate semi-humid climate.

Many studies have documented that the delta(13)C values of plants increase with altitude both on a global scale and locally in humid climates, while in semi-arid areas the opposite trend has been found. The study reported herein was conducted in a mountainous area of China characterized by a temperate semi-humid climate. The delta(13)C values of C(3) species do not exhibit a consistent variation along an altitudinal gradient and the observations suggest that the pattern of increasing delta(13)C with altitude cannot be generalized. In the study area, in addition to environmental factors such as changing air pressure and light, the interaction between temperature and plant water balance determines the delta(13)C-altitude variations in C(3) plants. The delta(13)C of the leaves of C(4) plants is found to increase with altitude with a mean gradient of 0.9 per thousand/km. The altitudinal trend of C(4) plants is attributed to the combined influences of water availability and other factors rather than temperature.

Evaluating controlling factors to Al(i)/(Ca + Mg) molar ratio in acidic soil water, southern and southwestern China: multivariate approach.

Al(i)/(Ca + Mg) molar ratio in soil water has been used as an indicator to the effects of acid deposition on terrestrial ecosystems. However, the main factors controlling this ratio have not been well documented in southern and southwestern China. In this study, we presented the variation in inorganic aluminum (Al(i)) and Al(i)/(Ca + Mg) molar ratio in different sites and soil horizons based on two to three years monitoring data, and evaluated the main factors controlling Al(i)/(Ca + Mg) molar ratio using principle component analysis (PCA) and partial least square (PLS) regression. Monitoring data showed although Al(i)/(Ca + Mg) molar ratios in most soil water were lower than assumed critical 1.0, higher molar ratios were found in some soil water at TSP and LXH site. Besides acid loading, both soil properties and soil water chemistry affected the value of Al(i)/(Ca + Mg) molar ratio in soil water. Partial least square (PLS) indicated that they had different relative importance in different soil horizons. In A-horizon, soil aluminum saturation (AlS) had higher influence on Al(i)/(Ca + Mg) molar ratio than soil water chemistry did; higher soil aluminum saturation (AlS) led to higher Al(i)/(Ca + Mg) molar ratio in soil water. In the deeper horizons (i.e., B(1)-, B(2)- and BC-horizon), inorganic aluminum (Al(i)) in soil water had more and more important role in regulating Al(i)/(Ca + Mg) molar ratio. On regional scale, soil aluminum saturation (AlS) as well as cation exchange capacity (CEC) was the dominant factor controlling Al(i)/(Ca + Mg) molar ratio. This should be paid enough attention on when making regional acid rain control policy in China.

[Distribution characters and affecting factors of Al(i)/(Ca + Mg) molar ratio in acid forest soils].

By using principle component analysis (PCA) and partial least square (PLS) regression, this paper studied the distribution characters and their affecting factors of Al(i)/(Ca + Mg) molar ratio in acid forest soils in southern and southwestern China. The monitoring data from 2000 to 2002 showed that in most cases, the Al(i)/(Ca + Mg) molar ratio in soil moisture was lower than assumed critical value 1.0, indicating that significant aluminum toxicity to vegetation was not occurred in the study regions. PLS regression suggested that soil aluminum saturation (AlS) was the dominant factor affecting the Al(i)/(Ca + Mg) molar ratio in soil A horizon. Higher AlS led to a higher Al(i)/ (Ca + Mg) molar ratio in soil moisture. Despite of its lower acid deposition, Liuxihe basin had a higher Al(i)/(Ca + Mg) molar ratio in soil A horizon than other catchments, mainly due to its higher AIS. In deeper soil horizons (B1, B2 and BC), the inorganic aluminum (Al(i)) in soil moisture was the main factor affecting Al(i)/(Ca + Mg) molar ratio. Higher inorganic aluminum concentration resulted in higher Al(i)/(Ca + Mg) molar ratio. In each of study catchments, the vertical distribution of Al(i)/(Ca + Mg) molar ratio was basically identical with the distribution of inorganic aluminum (Al(i)) through soil profile. It was concluded that soil aluminum saturation was the main factor controlling the regional variation of Al(i)/(Ca + Mg) molar ratio in soil moisture, and the vertical distribution of soil Al(i)/(Ca + Mg) molar ratio in each site was mainly due to the vertical change of inorganic aluminum in soil moisture.