Long-term exposure of a free-living freshwater micro- and meiobenthos community to microplastic mixtures in microcosms.

Microplastics in a wide range of shapes and polymer types (MPs; <5 mm) accumulate in freshwater sediments, where they may pose an environmental threat to sediment-dwelling micro- and meiobenthos. To date, the effects of MPs on those organisms have mostly been studied in single-species experiments exposed to high particle concentrations. By contrast, there have been few investigations of the effects resulting from the long-term exposure of natural communities to environmental relevant MPs. This research gap was addressed in the present study. A microcosm experiment was conducted to examine the impact of a mixture of MPs of varying polymer composition, shape, and size (50% polystyrene (PS) beads: 1-µm diameter; 37% polyethylene terephthalate (PET) fragments: 32 × 21 µm in size, and 13% polyamide (PA) fibers 104 × 15 µm in size; % based on the total particle number) provided at two concentrations (low: 4.11 × 105 MPs/kg sediment dw and high: 4.11 × 107 MPs/kg sediment dw) and two exposure durations (4 and 12 weeks) on a micro- and meiobenthic community collected from a freshwater sediment. MPs exposure did not alter the abundance of protozoa (ciliates and flagellates) as well as the abundance and biomass of meiobenthic organisms (nematodes, rotifers, oligochaetes, gastrotrichs, nauplii), whereas the abundance and biomass of harpacticoid copepods was affected. Neither nematode species diversity (species richness, Shannon-Wiener index, and evenness) nor the NemaSPEAR[%]-index (pollution-sensitive index based on freshwater nematodes) changed in response to the MPs. However, changes in the structure of the meiobenthic and nematode community in the presence of environmentally relevant MPs mixtures cannot be excluded, such that microcosms experiments may be of value in detecting subtle, indirect effects of MPs.

Comparing the effects of fludioxonil on non-target soil invertebrates using ecotoxicological methods from single-species bioassays to model ecosystems.

The lower tier toxicity tests used for risk assessment of plant protection products are conducted with single species, only regarding direct effects of the tested substances. However, it is not clear, if lower tier tests are able to protect in situ soil communities, as these tests are not able to account for direct and indirect effects of chemicals on multi-species systems in natural soil communities. This knowledge gap between single-species tests and field studies can be bridged using model ecosystems (microcosms), which allow for the assessment of direct and indirect effects of the compounds under evaluation. In the present study, single-species toxicity tests and soil-spiked microcosms were used to comparatively investigate the toxicity of the non-systemic fungicide fludioxonil (FDO) on non-target soil organisms, with nematodes being the test organisms of choice. The potential effects of FDO on nematodes were investigated in two different test systems: (i) standardized toxicity tests using Caenorhabditis elegans exposed to FDO-spiked soil (FDO concentrations 50-1207 mg/kg soil dry weight) and (ii) in situ nematode communities sampled from microcosms containing FDO-spiked soil (FDO concentrations 75-600 mg/kg soil dry weight). FDO dose-dependently inhibited the reproduction of C. elegans, with an effect concentration (EC50) of 209.9 mg FDO/kg soil dry weight and a no observed effect concentration (NOEC) of 63.0 mg FDO/kg soil dry weight. In the microcosms, FDO significantly affected trait-based indices, such as the Maturity Index (MI25) and the Enrichment Index (EI), which responded already at FDO concentrations of 14.3 and 62.4 mg/kg dry soil. Overall, this study provides new insights into the impact of the non-systemic fungicide FDO on non-target soil organisms and demonstrates the suitability of nematode-based tools, that allow for a quick and cost-effective lower and higher tier risk assessment of plant protection products.

DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work.

Effective identification of species using short DNA fragments (DNA barcoding and DNA metabarcoding) requires reliable sequence reference libraries of known taxa. Both taxonomically comprehensive coverage and content quality are important for sufficient accuracy. For aquatic ecosystems in Europe, reliable barcode reference libraries are particularly important if molecular identification tools are to be implemented in biomonitoring and reports in the context of the EU Water Framework Directive (WFD) and the Marine Strategy Framework Directive (MSFD). We analysed gaps in the two most important reference databases, Barcode of Life Data Systems (BOLD) and NCBI GenBank, with a focus on the taxa most frequently used in WFD and MSFD. Our analyses show that coverage varies strongly among taxonomic groups, and among geographic regions. In general, groups that were actively targeted in barcode projects (e.g. fish, true bugs, caddisflies and vascular plants) are well represented in the barcode libraries, while others have fewer records (e.g. marine molluscs, ascidians, and freshwater diatoms). We also found that species monitored in several countries often are represented by barcodes in reference libraries, while species monitored in a single country frequently lack sequence records. A large proportion of species (up to 50%) in several taxonomic groups are only represented by private data in BOLD. Our results have implications for the future strategy to fill existing gaps in barcode libraries, especially if DNA metabarcoding is to be used in the monitoring of European aquatic biota under the WFD and MSFD. For example, missing species relevant to monitoring in multiple countries should be prioritized for future collaborative programs. We also discuss why a strategy for quality control and quality assurance of barcode reference libraries is needed and recommend future steps to ensure full utilisation of metabarcoding in aquatic biomonitoring.

Analyzing life-history traits and lipid storage using CARS microscopy for assessing effects of copper on the fitness of Caenorhabditis elegans.

Lipid storage provides energy for cell survival, growth, and reproduction and is closely related to the organismal response to stress imposed by toxic chemicals. However, the effects of toxicants on energy storage as it impacts certain life-history traits have rarely been investigated. Here, we used the nematode Caenorhabditis elegans as a test species for a chronic exposure to copper (Cu) at EC20 (0.50 mg Cu/l). Effects on the fatty acid distribution in C. elegans body were determined using coherent anti-Stokes Raman spectroscopy (CARS) to link population fitness responses with individual ecophysiological responses. Cu inhibited nematode reproductive capacity and offspring growth in addition to shortening the lifespan of exposed individuals. In adult nematodes, Cu exposure led to significant reduction of lipid storage compared to the Cu-free control: Under Cu, lipids filled only 0.5% of the nematode body volume vs. 7.5% in control nematodes, lipid droplets were on average 74% smaller and the number of tiny lipids (0-10 µm2) was increased. These results suggest that (1) Cu has an important effect on the life-history traits of nematodes; (2) the quantification of lipid storage can provide important information on the response of organisms to toxic stress; and (3) CARS microscopy is a promising tool for non-invasive quantitative and qualitative analyses of lipids as a measure of nematode fitness.

Is Caenorhabditis elegans representative of freshwater nematode species in toxicity testing?

Multi-species toxicity tests were conducted using a broad range of freshwater nematode species to assess interspecific differences in sensitivity to chemical stress and to compare the toxicity to that on the standard test organism Caenorhabditis elegans. The lethal effects of nine different chemical treatments, including metals and polycyclic aromatic hydrocarbons (PAHs) in single and mixture application, were determined for nematodes exposed for 48 h to spiked aqueous solutions. The investigated freshwater nematodes exhibited distinct differences in their sensitivity. Ranking of the susceptibility of 27 species to chemical stress showed that the effects were largely independent of the tested chemical compounds. Overall, the responses of C. elegans were well within the range of those of freshwater nematode species, being slightly less tolerant to metals, but more tolerant to PAHs than the average freshwater species response. Therefore, this study justified the use of C. elegans as representative model for freshwater nematode species in toxicity testing.

Response of nematode communities to metals and PAHs in freshwater microcosms.

Freshwater microcosms were used to investigate the effects of various metals and polycyclic aromatic hydrocarbons (PAHs), applied as single substances and in mixtures, on sediment-inhabiting nematode assemblages. Several community measures, including nematode abundance, biomass, species richness, species composition and the NemaSPEAR[%]-index, were assessed and their changes in response to the chemical treatments were compared with the results of single-species toxicity testing using the nematode Caenorhabditis elegans. The diagnostic power of endpoints revealing toxic effects was then evaluated to assess the general suitability of nematodes as bioindicators of sediment contamination by a set of relevant chemicals. Overall, community measures based on species-level (detected with principle response curves) responded most sensitively to chemical stress in the microcosms, especially in terms of biomass, with the C. elegans toxicity test was for the most part as sensitive to the chemicals as the nematode species composition. Generally, this study justified the suitability of nematodes in assessments of the risk of chemicals frequently associated with freshwater sediments and underlined the value of C. elegans in the prospective risk assessment of chemicals, as this species was able to indicate the negative effects of comparatively low sediment concentrations of the contaminants.

A comparative approach using ecotoxicological methods from single-species bioassays to model ecosystems.

Soft sediments are often hotspots of chemical contamination, and a thorough ecotoxicological assessment of this habitat can help to identify the causes of stress and to improve the health of the respective ecosystems. As an important component of the ecologically relevant meiobenthic fauna, nematodes can be used for sediment assessments, with various assay tools ranging from single-species toxicity tests to field studies. In the present study, microcosms containing sediment were used to investigate direct and indirect effects of zinc on natural nematode assemblages, and acute community toxicity tests considering only direct toxicity were conducted. The responses of the various freshwater nematode species in both approaches were compared with those of Caenorhabditis elegans, determined in standardized tests (ISO 10872). At a median lethal concentration (LC50) of 20 mg Zn/L, C. elegans represented the median susceptibility of 15 examined nematode species examined in the acute community toxicity tests. In the microcosms, Zn affected the nematodes dose-dependently, with changes in species composition first detected at 13 mg Zn/kg to 19 mg Zn/kg sediment dry weight. The observed species sensitivities in the microcosms corresponded better to field observations than to the results of the acute community toxicity tests. Environ Toxicol Chem 2016;35:2987-2997. © 2016 SETAC.