Population structure and genetic connectivity of the scalloped hammerhead shark (Sphyrna lewini) across nursery grounds from the Eastern Tropical Pacific: Implications for management and conservation.

Defining demographically independent units and understanding patterns of gene flow between them is essential for managing and conserving exploited populations. The critically endangered scalloped hammerhead shark, Sphyrna lewini, is a coastal semi-oceanic species found worldwide in tropical and subtropical waters. Pregnant females give birth in shallow coastal estuarine habitats that serve as nursery grounds for neonates and small juveniles, whereas adults move offshore and become highly migratory. We evaluated the population structure and connectivity of S. lewini in coastal areas and one oceanic island (Cocos Island) across the Eastern Tropical Pacific (ETP) using both sequences of the mitochondrial DNA control region (mtCR) and 9 nuclear-encoded microsatellite loci. The mtCR defined two genetically discrete groups: one in the Mexican Pacific and another one in the central-southern Eastern Tropical Pacific (Guatemala, Costa Rica, Panama, and Colombia). Overall, the mtCR data showed low levels of haplotype diversity ranging from 0.000 to 0.608, while nucleotide diversity ranged from 0.000 to 0.0015. More fine-grade population structure was detected using microsatellite loci where Guatemala, Costa Rica, and Panama differed significantly. Relatedness analysis revealed that individuals within nursery areas were more closely related than expected by chance, suggesting that S. lewini may exhibit reproductive philopatric behaviour within the ETP. Findings of at least two different management units, and evidence of philopatric behaviour call for intensive conservation actions for this highly threatened species in the ETP.

Green, yellow or black? Genetic differentiation and adaptation signatures in a highly migratory marine turtle.

Marine species may exhibit genetic structure accompanied by phenotypic differentiation related to adaptation despite their high mobility. Two shape-based morphotypes have been identified for the green turtle (Chelonia mydas) in the Pacific Ocean: the south-central/western or yellow turtle and north-central/eastern or black turtle. The genetic differentiation between these morphotypes and the adaptation of the black turtle to environmentally contrasting conditions of the eastern Pacific region has remained a mystery for decades. Here we addressed both questions using a reduced-representation genome approach (Dartseq; 9473 neutral SNPs) and identifying candidate outlier loci (67 outlier SNPs) of biological relevance between shape-based morphotypes from eight Pacific foraging grounds (n = 158). Our results support genetic divergence between morphotypes, probably arising from strong natal homing behaviour. Genes and enriched biological functions linked to thermoregulation, hypoxia, melanism, morphogenesis, osmoregulation, diet and reproduction were found to be outliers for differentiation, providing evidence for adaptation of C. mydas to the eastern Pacific region and suggesting independent evolutionary trajectories of the shape-based morphotypes. Our findings support the evolutionary distinctness of the enigmatic black turtle and contribute to the adaptive research and conservation genomics of a long-lived and highly mobile vertebrate.

The devil is coming: Feeding behavior of juvenile Munk's devil rays (Mobula munkiana) in very shallow waters of Punta Descartes, Costa Rica

Introduction: Identifying critical habitats for vulnerable elasmobranch species is crucial for effective conservation measures. The Munk's devil ray (Mobula munkiana) is endemic to the Eastern Pacific, but yet little is known about its biology, ecology, and habitat use. As filter feeders, it is assumed that this species concentrates at high-productive upwelling regions, such as the Costa Rican Dome. Like many elasmobranchs, its populations are highly depleted and require urgent information to inform better conservation measures. Objective: The study was conducted to gain information on a unique behavior observed in juvenile M. munkiana, so further information can be provided on early life stages of this vulnerable species. Methods: From June to September 2017 and in August 2018, the feeding behavior of juvenile Mobula munkiana was observed in two shallow bays located at Punta Descartes, North Pacific Costa Rica. Individuals were captured using a non-lethal method to obtain data on size, weight, and sex distribution. Plankton samples (n = 100) were taken at both bays throughout the months to infer diet composition. Results: Munk's devil rays showed a repetitive swimming movement parallel to the beach, feeding exclusively in the shallow breaking zone of the low tide waves at depth <50cm. A total of 12 M. munkiana (11 live and one found dead) indicated a juvenile feeding aggregation ranging from 490 - 610mm in disk width and 1400 - 2300gr in weight. The sex ratio (males to females) was 3:1. Zooplankton of the order Mysidacae was found in the highest abundance in the breaking zone. Conclusions: The specific behavior and seasonal occurrence of juvenile Munk's devil rays in this area seem to be driven by prey abundance. More research is needed to conclude the presence of reproductive adults at deeper depths and the year-round habitat use of Punta Descartes. The area is threatened by unsustainable development and requires realistic management strategies to guarantee the survival of vulnerable species and their critical habitats.

Introducción: La identificación de hábitats críticos para especies vulnerables de elasmobranquios es crucial para tomar medidas de conservación efectivas. La manta diablo o raya de Munk (Mobula munkiana) es endémica del Pacífico Oriental y se sabe poco sobre su biología, ecología y uso de hábitat. Como filtradores, se asume que se concentran en regiones de afloramiento con alta productividad; sus poblaciones se consideran en disminución y requieren información urgente para fundamentar medidas de conservación. Objetivo: El estudio se realizó para obtener información sobre un comportamiento de alimentación observado en juveniles de M. munkiana, con el fin de proporcionar más información sobre las primeras etapas de vida de esta especie considerada vulnerable a la extinción. Métodos: De junio a setiembre de 2017 y en agosto de 2018, se observó el comportamiento de alimentación de los juveniles de M. munkiana en dos bahías poco profundas de Punta Descartes, en el Pacífico norte de Costa Rica. Los individuos fueron capturados utilizando un método no letal para obtener datos sobre el tamaño, peso y sexo. Se tomaron 100 muestras de plancton en las bahías para inferir la composición de la dieta. Resultados: Las rayas mostraron un comportamiento de natación repetitivo paralelo a la playa, alimentándose exclusivamente en la zona de rompimiento de las olas en marea baja, a menos de 50 cm de profundidad. Un total de 12 rayas M. munkiana (11 vivas y una encontrada muerta) indicaron una agregación de juveniles para alimentarse. Los anchos de disco variaron de 490 a 610 mm y el peso entre 1400 a 2300 g. La proporción sexual (machos: hembras) fue de 3:1. En la zona donde rompían las olas se encontró principalmente el orden Mysidaceae. Conclusiones: El comportamiento específico y la ocurrencia estacional de M. munkiana en la zona de estudio parecen estar impulsados por la abundancia de presas. Se necesita más investigación para concluir la presencia de adultos reproductivos a mayor profundidad y sobre el uso de hábitat en los alrededores de Punta Descartes durante todo el año. Esta área se encuentra amenazada por un desarrollo insostenible y requiere estrategias de manejo realistas para garantizar la supervivencia de especies vulnerables y sus hábitats críticos.

Identifying genetic lineages through shape: An example in a cosmopolitan marine turtle species using geometric morphometrics.

The green turtle (Chelonia mydas) is a globally distributed marine species whose evolutionary history has been molded by geological events and oceanographic and climate changes. Divergence between Atlantic and Pacific clades has been associated with the uplift of the Panama Isthmus, and inside the Pacific region, a biogeographic barrier located west of Hawaii has restricted the gene flow between Central/Eastern and Western Pacific populations. We investigated the carapace shape of C. mydas from individuals of Atlantic, Eastern Pacific, and Western Pacific genetic lineages using geometric morphometrics to evaluate congruence between external morphology and species' phylogeography. Furthermore, we assessed the variation of carapace shape according to foraging grounds. Three morphologically distinctive groups were observed which aligned with predictions based on the species' lineages, suggesting a substantial genetic influence on carapace shape. Based on the relationship between this trait and genetic lineages, we propose the existence of at least three distinct morphotypes of C. mydas. Well-defined groups in some foraging grounds (Galapagos, Costa Rica and New Zealand) may suggest that ecological or environmental conditions in these sites could also be influencing carapace shape in C. mydas. Geometric morphometrics is a suitable tool to differentiate genetic lineages in this cosmopolitan marine species. Consequently, this study opens new possibilities to explore and test ecological and evolutionary hypotheses in species with wide morphological variation and broad geographic distribution range.