Three-dimensional hydrogen bonding between Landers and planar molecules facilitated by electrostatic interactions with Ni adatoms.

Using a combination of UHV-STM and molecular mechanics calculations, we investigate the surface self-assembly of a complex multi-component metal-molecule system with synergistic non-covalent interactions. Hydrogen bonding between three-dimensional Lander-DAT molecules and planar PTCDI molecules, adsorbed closer to the surface, is found to be facilitated by electrostatic interactions between co-adsorbed Ni adatoms and the flexible molecular DAT groups.

Single and double valence configuration interactions for recovering the exponential decay law while tunneling through a molecular wire.

The exponential decay of the electronic transmission through a molecular wire with its length is calculated using a configuration interaction elastic scattering quantum chemistry (CI-ESQC) theory [1, 2]. In the HOMO-LUMO gap and in a one-electron approximation, this decay is exponential since the scattering matrix comes from a product of spatial propagators along the wire. In a valence SD-CI (single and double-configurations interaction) description, such a product does not exist. An effective one was numerically obtained from the CI-ESQC scattering matrix. Fluctuations over the effective CI-exponential decay come from the truncation of the full CI basis set and also from many-body exchange-correlation effects along the molecular wire.

Mapping the excited states of single hexa-peri-benzocoronene oligomers.

Electronic states of a molecule are usually analyzed via their decomposition in linear superposition of multielectronic Slater determinants built up from monoelectronics molecular orbitals. It is generally believed that a scanning tunneling microscope (STM) is able to map those molecular orbitals. Using a low-temperature ultrahigh vacuum (LT-UHV) STM, the dI/dV conductance maps of large single hexabenzocoronene (HBC) monomer, dimer, trimer, and tetramer molecules were recorded. We demonstrate that the attribution of a tunnel electronic resonance to a peculiar π molecular orbital of the molecule (or σ intermonomer chemical bond) in the STM junction is inappropriate. With an STM weak-measurement-like procedure, a dI/dV resonance results from the conductance contribution of many molecular states whose superposition makes it difficult to reconstruct an apparent molecular orbital electron probability density map.

The different designs of molecule logic gates.

From the bottom, it is demonstrated how all the known intramolecular single-molecule logic gate architectures ­ semi-classical circuits, quantum Hamiltonian circuits, and qubit circuits ­ are different versions of the quantum control of intramolecular processes. They only differ in the way the classical input data are encoded on the quantum molecular system and how the quantum-to-classical conversion proceeds to read the output.

Single molecule logical devices.

After almost 40 years of development, molecular electronics has given birth to many exciting ideas that range from molecular wires to molecular qubit-based quantum computers. This chapter reviews our efforts to answer a simple question: how smart can a single molecule be? In our case a molecule able to perform a simple Boolean function is a child prodigy. Following the Aviram and Ratner approach, these molecules are inserted between several conducting electrodes. The electronic conduction of the resulting molecular junction is extremely sensitive to the chemical nature of the molecule. Therefore designing this latter correctly allows the implementation of a given function inside the molecular junction. Throughout the chapter different approaches are reviewed, from hybrid devices to quantum molecular logic gates. We particularly stress that one can implement an entire logic circuit in a single molecule, using either classical-like intramolecular connections, or a deformation of the molecular orbitals induced by a conformational change of the molecule. These approaches are radically different from the hybrid-device approach, where several molecules are connected together to build the circuit.

Manipulating molecular quantum states with classical metal atom inputs: demonstration of a single molecule NOR logic gate.

Quantum states of a trinaphthylene molecule were manipulated by putting its naphthyl branches in contact with single Au atoms. One Au atom carries 1-bit of classical information input that is converted into quantum information throughout the molecule. The Au-trinaphthylene electronic interactions give rise to measurable energy shifts of the molecular electronic states demonstrating a NOR logic gate functionality. The NOR truth table of the single molecule logic gate was characterized by means of scanning tunnelling spectroscopy.

Self-assembly of hydrogen-bonded chains of molecular landers.

One-dimensional chains of a specially designed lander molecule with di-carboxyl imide functional moieties, enabling complementary intermolecular hydrogen bonding, have been self-assembled under ultra high vacuum conditions on a Au(111) surface and characterized by scanning tunneling microscopy.

Supramolecular architectures on surfaces formed through hydrogen bonding optimized in three dimensions.

Supramolecular self-assembly on surfaces, guided by hydrogen bonding interactions, has been widely studied, most often involving planar compounds confined directly onto surfaces in a planar two-dimensional (2-D) geometry and equipped with structurally rigid chemical functionalities to direct the self-assembly. In contrast, so-called molecular Landers are a class of compounds that exhibit a pronounced three-dimensional (3-D) structure once adsorbed on surfaces, arising from a molecular backboard equipped with bulky groups which act as spacer legs. Here we demonstrate the first examples of extended, hydrogen-bonded surface architectures formed from molecular Landers. Using high-resolution scanning tunnelling microscopy (STM) under well controlled ultrahigh vacuum conditions we characterize both one-dimensional (1-D) chains as well as five distinct long-range ordered 2-D supramolecular networks formed on a Au(111) surface from a specially designed Lander molecule equipped with dual diamino-triazine (DAT) functional moieties, enabling complementary NH...N hydrogen bonding. Most interestingly, comparison of experimental results to STM image calculations and molecular mechanics structural modeling demonstrates that the observed molecular Lander-DAT structures can be rationalized through characteristic intermolecular hydrogen bonding coupling motifs which would not have been possible in purely planar 2-D surface assembly because they involve pronounced 3-D optimization of the bonding configurations. The described 1-D and 2-D patterns of Lander-DAT molecules may potentially be used as extended molecular molds for the nucleation and growth of complex metallic nanostructures.

On the role of the bridging dicyanamidobenzene ligand in a new binuclear ruthenium complex: [{Ru(tpy)(thd)}2(mu-dicyd)][PF6] with tpy = 2,2':6',2' '-terpyridine and thd = 2,2,6,6-tetramethyl-3,5-heptanedione.

The dicyanamidobenzene-bridge diruthenium complex [{Ru(tpy)(thd)}(2)(mu-dicyd)][PF(6)] ([3][PF(6)]) (dicyd = 1,4-dicyanamidobenzene, tpy = 2,2':6',2' '-terpyridine, thd = 2,2,6,6-tetramethyl-3,5-heptanedione) and its mononuclear counterpart [Ru(tpy)(thd)(Ipcyd)] (2) [Ipcyd = 4-iodophenylcyanamide anion (Ipcyd(-))] were synthesized and fully characterized. Cyclic voltammetry of 3 showed the presence of four reversible one-electron redox couples. UV-vis-NIR spectroelectrochemistry and EPR spectroscopy of the electrogenerated paramagnetic intermediates were used to ascertain the oxidation-state distribution. The stable starting dinuclear complex 3(+) is found to be a ligand-centered anion radical as shown by EPR spectroscopy, magnetic susceptibility measurements, and DFT calculations. Oxidation of 3(+) to 3(2+) led to an EPR silent system due to substantial intramolecular antiferromagnetic interaction of the electron spins carried by the low spin ruthenium(III) atom and the bridging anion radical dicyanamido (dicyd(*)(-)), an observation which was supported by UV-vis-NIR, X-ray structure, and DFT calculations. Complex 3(3+) presented an EPR spectra consistent with a total effective spin S = (1)/(2) issued from an antiferromagnetic interaction of electron spins carried by two low spin ruthenium(III) atoms and the bridging anion radical dicyd(*)(-) in accordance with UV-vis-NIR. This study shows that the dicyanamidobenzene bridging ligand has indubitably a noninnocent behavior.

Understanding electrochromic processes initiated by dithienylcyclopentene cation-radicals.

Simple photochromic dithienylethylenes with either a perfluoro or a perhydro cyclopentene ring, and a variety of substituents (chlorine, iodine, trimethylsilyl, phenylthio, aldehyde, carboxylic acid, and ethynylanisyl), have been prepared and their electrochemical behavior was explored by cyclic voltammetry. All dithienylethylenes present two-electron irreversible oxidation waves in their open form, but the cation-radical of the open isomers can follow two different reaction pathways: dimerization or ring closure, whereas the halogen derivatives follow a dimerization mechanism, the presence of donor groups, such as the phenylthio-substituted compound, promote an efficient oxidative ring closure following an ECE/DISP mechanism. Electrochromic properties are also found in the corresponding ring-closed isomers. Depending on the substituents on the thiophene ring, and the perfluro or perhydro cyclopentene ring, open isomers can be obtained from oxidation (chemical or electrochemical) of the corresponding ring-closed isomers via an EC mechanism. This reaction pathway is favored by the presence of electron-withdrawing groups in the molecule. For all these compounds, closed or open, the oxidation lies between 0.8 and 1.5 V vs SCE, and provokes a permanent modification of the color, even after an oxidation-reduction cycle. This could be qualified as "electrochromism with memory". On the other hand, the ring-closed electron-rich isomers (E degrees < 0.8 V), which show reversible waves at the cation-radical or even dication level, give rise to "true electrochromism", for which no structural changes are observed. The experimental study was completed by theoretical calculations at the DFT level, using B3LYP density functional, which gave information on the total energy, the geometry, and the electronic structures of several representative compounds, either in the neutral form or in the cation-radical state. These results are important for the potential design of photochromic systems, such as three-state conjugated systems and photoelectrical molecular switching devices.