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1.
FEMS Microbiol Lett ; 360(1): 9-12, 2014 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-25175800

RESUMO

Herein, we report a high-quality draft genome sequence of an uncultivated aromatic compound-degrading bacterium, obtained by the stable isotope probing method from a sulfate-reducing microcosm from an oil-contaminated tidal flat. The obtained genome was closely related with that of Desulfobacula toluolica Tol2. Abundant genes for various anaerobic aromatic degradation pathways and putative mobile elements were detected in the genome.


Assuntos
Deltaproteobacteria/genética , Deltaproteobacteria/metabolismo , Genoma Bacteriano/genética , Hidrocarbonetos Aromáticos/metabolismo , DNA Bacteriano/genética , Redes e Vias Metabólicas/genética
2.
Antonie Van Leeuwenhoek ; 104(6): 1185-92, 2013 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-24078017

RESUMO

A novel, strictly anaerobic, moderately thermophilic, endospore-forming, sulfate-reducing bacterium, designated TGB60-1T, was isolated from a hydrothermal sediment vent collected from the Tofua Arc in the Tonga Trench. The strain was characterized phenotypically and phylogenetically. The isolated strain was observed to be Gram-positive, with slightly curved rod-shaped cells and a polar flagellum. Strain TGB60-1T was found to grow anaerobically at 37­60 °C (optimum, 50 °C), at pH 6.0­8.5 (optimum, pH 7.0) and with 1.0­4.0 % (w/v) NaCl (optimum, 3.0 %). The electron acceptors utilised were determined to be sulfate, sulfite, and thiosulfate. Strain TGB60-1T was found to utilise pyruvate and H2 as electron donors. Strain TGB60-1T was determined to be related to representatives of the genus Desulfotomaculum and the closest relatives within this genus were identified as Desulfotomaculum halophilum SEBR 3139T, Desulfotomaculum alkaliphilum S1T and Desulfotomaculum peckii LINDBHT1T (92.7, 92.1, and 91.8 % 16S rRNA gene sequence similarity, respectively). The major fatty acids (>20 %) were identified as C16:0 and C18:1 ω7c. The G+C content of the genomic DNA of this novel bacterium was determined to be 53.9 mol%. Based on this polyphasic taxonomic study, strain TGB60-1T is considered to represent a novel species in the genus Desulfotomaculum, for which the name Desulfotomaculum tongense sp. nov. is proposed. The type strain of D. tongense is strain TGB60-1T (= KTCT 4534T = JCM 18733T).


Assuntos
Desulfotomaculum/classificação , Desulfotomaculum/isolamento & purificação , Sedimentos Geológicos/microbiologia , Aerobiose , Técnicas de Tipagem Bacteriana , Composição de Bases , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Desulfotomaculum/genética , Desulfotomaculum/fisiologia , Ácidos Graxos/análise , Flagelos/fisiologia , Hidrogênio/metabolismo , Concentração de Íons de Hidrogênio , Fontes Hidrotermais , Microscopia Eletrônica , Dados de Sequência Molecular , Oxirredução , Filogenia , Ácido Pirúvico/metabolismo , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Cloreto de Sódio/metabolismo , Compostos de Enxofre/metabolismo , Temperatura , Tonga
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