Functional hierarchies in brain dynamics characterized by signal reversibility in ferret cortex.

Brain signal irreversibility has been shown to be a promising approach to study neural dynamics. Nevertheless, the relation with cortical hierarchy and the influence of different electrophysiological features is not completely understood. In this study, we recorded local field potentials (LFPs) during spontaneous behavior, including awake and sleep periods, using custom micro-electrocorticographic (µECoG) arrays implanted in ferrets. In contrast to humans, ferrets remain less time in each state across the sleep-wake cycle. We deployed a diverse set of metrics in order to measure the levels of complexity of the different behavioral states. In particular, brain irreversibility, which is a signature of non-equilibrium dynamics, captured by the arrow of time of the signal, revealed the hierarchical organization of the ferret's cortex. We found different signatures of irreversibility and functional hierarchy of large-scale dynamics in three different brain states (active awake, quiet awake, and deep sleep), showing a lower level of irreversibility in the deep sleep stage, compared to the other. Irreversibility also allowed us to disentangle the influence of different cortical areas and frequency bands in this process, showing a predominance of the parietal cortex and the theta band. Furthermore, when inspecting the embedded dynamic through a Hidden Markov Model, the deep sleep stage was revealed to have a lower switching rate and lower entropy production. These results suggest functional hierarchies in organization that can be revealed through thermodynamic features and information theory metrics.

A low dimensional embedding of brain dynamics enhances diagnostic accuracy and behavioral prediction in stroke.

Large-scale brain networks reveal structural connections as well as functional synchronization between distinct regions of the brain. The latter, referred to as functional connectivity (FC), can be derived from neuroimaging techniques such as functional magnetic resonance imaging (fMRI). FC studies have shown that brain networks are severely disrupted by stroke. However, since FC data are usually large and high-dimensional, extracting clinically useful information from this vast amount of data is still a great challenge, and our understanding of the functional consequences of stroke remains limited. Here, we propose a dimensionality reduction approach to simplify the analysis of this complex neural data. By using autoencoders, we find a low-dimensional representation encoding the fMRI data which preserves the typical FC anomalies known to be present in stroke patients. By employing the latent representations emerging from the autoencoders, we enhanced patients' diagnostics and severity classification. Furthermore, we showed how low-dimensional representation increased the accuracy of recovery prediction.

Inferring the dynamical effects of stroke lesions through whole-brain modeling.

Understanding the effect of focal lesions (stroke) on brain structure-function traditionally relies on behavioral analyses and correlation with neuroimaging data. Here we use structural disconnection maps from individual lesions to derive a causal mechanistic generative whole-brain model able to explain both functional connectivity alterations and behavioral deficits induced by stroke. As compared to other models that use only the local lesion information, the similarity to the empirical fMRI connectivity increases when the widespread structural disconnection information is considered. The presented model classifies behavioral impairment severity with higher accuracy than other types of information (e.g.: functional connectivity). We assessed topological measures that characterize the functional effects of damage. With the obtained results, we were able to understand how network dynamics change emerge, in a nontrivial way, after a stroke injury of the underlying complex brain system. This type of modeling, including structural disconnection information, helps to deepen our understanding of the underlying mechanisms of stroke lesions.

Edge-centric analysis of stroke patients: An alternative approach for biomarkers of lesion recovery.

Most neuroimaging studies of post-stroke recovery rely on analyses derived from standard node-centric functional connectivity to map the distributed effects in stroke patients. Here, given the importance of nonlocal and diffuse damage, we use an edge-centric approach to functional connectivity in order to provide an alternative description of the effects of this disorder. These techniques allow for the rendering of metrics such as normalized entropy, which describes the diversity of edge communities at each node. Moreover, the approach enables the identification of high amplitude co-fluctuations in fMRI time series. We found that normalized entropy is associated with stroke lesion severity and continually increases across the time of patients' recovery. Furthermore, high amplitude co-fluctuations not only relate to the lesion severity but are also associated with patients' level of recovery. The current study is the first edge-centric application for a clinical population in a longitudinal dataset and demonstrates how a different perspective for functional data analysis can further characterize topographic modulations of brain dynamics.

Correction: Protocol of the Healthy Brain Study: An accessible resource for understanding the human brain and how it dynamically and individually operates in its bio-social context.

[This corrects the article DOI: 10.1371/journal.pone.0260952.].

Protocol of the Healthy Brain Study: An accessible resource for understanding the human brain and how it dynamically and individually operates in its bio-social context.

The endeavor to understand the human brain has seen more progress in the last few decades than in the previous two millennia. Still, our understanding of how the human brain relates to behavior in the real world and how this link is modulated by biological, social, and environmental factors is limited. To address this, we designed the Healthy Brain Study (HBS), an interdisciplinary, longitudinal, cohort study based on multidimensional, dynamic assessments in both the laboratory and the real world. Here, we describe the rationale and design of the currently ongoing HBS. The HBS is examining a population-based sample of 1,000 healthy participants (age 30-39) who are thoroughly studied across an entire year. Data are collected through cognitive, affective, behavioral, and physiological testing, neuroimaging, bio-sampling, questionnaires, ecological momentary assessment, and real-world assessments using wearable devices. These data will become an accessible resource for the scientific community enabling the next step in understanding the human brain and how it dynamically and individually operates in its bio-social context. An access procedure to the collected data and bio-samples is in place and published on https://www.healthybrainstudy.nl/en/data-and-methods/access. Trail registration: https://www.trialregister.nl/trial/7955.

Event-related potential correlates of stimulus equivalence classes: A study of task order of the equivalence based priming probes with respect to the stimulus equivalence tests, and among the distinct trial types with each other.

This study investigates the influences of: 1) the task order of two stimulus equivalence classes (SEC) probes, and 2) the possible differences within the equivalence trial types. These factors were analyzed together on both behavioral and event-related potentials (ERP) data. Two groups of normal subjects participated in two successive sessions. In the first session, all participants were trained in the baseline relations among visual stimuli (pseudo-words). In the second session, one group performed the matching-to-sample (MTS) equivalence tests before the equivalence-relatedness-priming (EBRP) task, while the other group performed both tasks in reverse order. In the EBRP task related trial types included trained, symmetrical and equivalence relationships while the unrelated trial types included the same stimuli but without relationships. Event related potentials were recorded separately for related and unrelated conditions during the EBRP task. Results showed that response times to related trials were shorter than those to unrelated ones. At the electrophysiological level, two late waveforms were sensitive to the differences among the stimulus pairs of the EBRP task: Both waveforms were larger for the unrelated than the related conditions. Conversely, there were no main influences of the task order or of the trial types with each other. These results provide evidence that 1) the EBRP task exhibits priming effects among the SEC stimuli, 2) the behavioral and electrophysiological effects were similar regardless of whether the EBRP task was done before or after the MTS tests, and 3) there were no differences within the baseline and derived trial types in the EBRP task.

Effects of mixed training structures on equivalence class formation

The experimental literature reports differences in performance when participants are tested for the emergence of derived relations after stimulus equivalences class training, depending on which training structured is used. Comparison-as-node and sample-as-node structures have shown to be more effective in producing the emergence of derived relations than linear series, with inconclusive results about which of the first two structures is more effective. Intertrial correspondence was manipulated between the stimuli via the use of mixed training structures. 48 participants were divided in four groups: the first received equivalence-class training using a sample-as-node structure, the second following a comparison-as-node structure, and the other two following a mixed structure with the same nodal density of the central node as the first two. The four groups were taught two five-member equivalence classes with a nodal density of four. Both during training and testing, the performances were higher for the sample-as-node and the comparison-as-node structures, compared to the other two structures. Results are discussed from the lens of hypotheses based on simple-discriminations learning and the role of samples and comparisons (AU)

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