Genomic markers linked to Meloidogyne chitwoodi resistance introgressed from Solanum bulbocastanum to cultivated potato and their utility in marker-assisted selection.

Meloidogyne chitwoodi is a major threat to potato production in the Pacific Northwest region of the United States. Infected tubers are rendered unmarketable; hence, growers' profitability is adversely affected. Breeding for nematode resistance is a long-term process and phenotyping the segregating populations for nematode resistance is the most time-consuming and laborious part of the process. Using DNA-based markers closely linked to the nematode resistance trait for marker-assisted selection (MAS) could enhance breeding efficiency and accuracy. In the present study, a pool of phenotyped progenies segregating for nematode resistance and susceptibility were fingerprinted using a 21 K single-nucleotide polymorphism (SNP) array. Eight candidate SNPs located on potato Chromosome 11, segregating with the nematode resistance trait, were identified and used as landmarks for discovery of other marker types such as simple sequence repeat (SSR) and insertion-deletion (INDEL) markers. Subsequently, a total of eight SNPs, 30 SSRs, and four INDELS located on scaffold 11 of Solanum bulbocastanum were used to design primers; markers were validated in a panel of resistant and susceptible clones. Two SNPs (SB_MC1Chr11-PotVar0066518 and SB_MC1Chr11-PotVar0064140), five SSRs (SB_MC1Chr11-SSR04, SB_MC1Chr11-SSR08, SB_MC1Chr11-SSR10, SB_MC1Chr11-SSR13, and SB_MC1Chr11-SSR20), and one INDEL (SB_MC1Chr11-INDEL4) markers showed polymorphism between the resistant and susceptible clones in the test panel and in other segregating progenies. These markers are robust, highly reproducible, and easy to use for MAS of nematode-resistant potato clones to enhance the breeding program. Supplementary Information: The online version contains supplementary material available at 10.1007/s11032-022-01285-w.

Impact of Globodera ellingtonae on yield of potato (Solanum tuberosum).

Globodera ellingtonae was described from Oregon and Idaho in 2012. Due to the close phylogenetic relationship of this nematode to the potato cyst nematodes G. pallida and G. rostochiensis, and evidence that G. ellingtonae reproduces on potato (Solanum tuberosum), potential damaging effects to potato by this nematode are of great concern. To evaluate the pathogenic effects of G. ellingtonae on potato, five field and two microplot trials were conducted over a four-year period including comparisons of a range of G. ellingtonae initial population densities (Pi) and potato cultivars. In two field trials, potato 'Russet Burbank' was inoculated with Pi of G. ellingtonae ranging from 0 to 80 eggs/g soil; a similar trial was conducted with potato 'Désirée.' In another field trial, potato cultivars varying in maturity lengths were either inoculated (80 eggs/g soil) or not with G. ellingtonae. In a final field trial, 'Ranger Russet' was inoculated with Pi of G. ellingtonae ranging from 0 to 360 eggs/g soil. Additionally, Russet Burbank was inoculated with G. ellingtonae Pi ranging from 0 to 169 eggs/g soil in microplots. In all trials, data on tuber yield, aboveground biomass, final eggs/cyst, final population densities (Pf), and reproduction factor (RF = Pf/Pi) were collected. In only two of six trials conducted with increasing levels of Pi, was there a significant negative correlation between Pi of G. ellingtonae and yield of potato. Based on the linear regression model of tuber yield on logPi for Russet Burbank, 30.5 to 40.9% yield loss was predicted at a Pi of 40 and 80 eggs/g soil, respectively, and for Ranger Russet, 16.5 and 19.7% yield loss was predicted at a Pi of 40 and 80 eggs/g soil, respectively. None of the potato cultivars inoculated with 80 G. ellingtonae eggs/g soil had significantly reduced yields compared to non-inoculated plants. Reproduction factor values across trials ranged from 4.0 to 8.3 when inoculated with Pi of 40 eggs/g soil, demonstrating that the nematode successfully invaded and reproduced on potato in all trials. Care should be taken in extrapolating the results from these experiments conducted in Oregon to probable effects of G. ellingtonae on potato in other environments.KeywordsPotato, Damage, Globodera, Regression.Globodera ellingtonae was described from Oregon and Idaho in 2012. Due to the close phylogenetic relationship of this nematode to the potato cyst nematodes G. pallida and G. rostochiensis, and evidence that G. ellingtonae reproduces on potato (Solanum tuberosum), potential damaging effects to potato by this nematode are of great concern. To evaluate the pathogenic effects of G. ellingtonae on potato, five field and two microplot trials were conducted over a four-year period including comparisons of a range of G. ellingtonae initial population densities (Pi) and potato cultivars. In two field trials, potato 'Russet Burbank' was inoculated with Pi of G. ellingtonae ranging from 0 to 80 eggs/g soil; a similar trial was conducted with potato 'Désirée.' In another field trial, potato cultivars varying in maturity lengths were either inoculated (80 eggs/g soil) or not with G. ellingtonae. In a final field trial, 'Ranger Russet' was inoculated with Pi of G. ellingtonae ranging from 0 to 360 eggs/g soil. Additionally, Russet Burbank was inoculated with G. ellingtonae Pi ranging from 0 to 169 eggs/g soil in microplots. In all trials, data on tuber yield, aboveground biomass, final eggs/cyst, final population densities (Pf), and reproduction factor (RF = Pf/Pi) were collected. In only two of six trials conducted with increasing levels of Pi, was there a significant negative correlation between Pi of G. ellingtonae and yield of potato. Based on the linear regression model of tuber yield on logPi for Russet Burbank, 30.5 to 40.9% yield loss was predicted at a Pi of 40 and 80 eggs/g soil, respectively, and for Ranger Russet, 16.5 and 19.7% yield loss was predicted at a Pi of 40 and 80 eggs/g soil, respectively. None of the potato cultivars inoculated with 80 G. ellingtonae eggs/g soil had significantly reduced yields compared to non-inoculated plants. Reproduction factor values across trials ranged from 4.0 to 8.3 when inoculated with Pi of 40 eggs/g soil, demonstrating that the nematode successfully invaded and reproduced on potato in all trials. Care should be taken in extrapolating the results from these experiments conducted in Oregon to probable effects of G. ellingtonae on potato in other environments.KeywordsPotato, Damage, Globodera, Regression.

Effect of Storage Environment on Hatching of the Cyst Nematode Globodera ellingtonae.

Globodera spp. eggs go through a diapause, which remains dormant until favorable hatching conditions are reached. Because of the regulatory concerns with cyst nematodes, it is often only possible to rear eggs for research in the greenhouse. However, hatch is often lower for greenhouse-produced eggs than for eggs obtained from the field. The goal of this research was to determine storage conditions for Globodera ellingtonae eggs produced in the greenhouse that would increase percentage hatch. Over 3 yr, G. ellingtonae greenhouse-produced eggs were stored in different environments (-20°C, 4°C, room temperature, and the field) in either dry or moist soil. Percentage hatch after exposure to the different environments was determined in potato root diffusate. Across two experiments, field-produced eggs had higher hatch rates (65.2%) than greenhouse-produced eggs (10.4%). Temperature did not have an appreciable influence on hatch of eggs stored dry in two experiments (2.8% to 8.4% and 3.8% to 8.6%), but hatch of eggs stored in moist soil was significantly higher than in dry soil at all temperatures except -20°C (26.8% and 28.7%). However, the ability of G. ellingtonae greenhouse-, microplot-, and field-produced eggs to reproduce on potato in field microplots was not different. Although it may not be possible to produce G. ellingtonae eggs in the greenhouse that have the magnitude of hatch as those produced in the field, hatching can be greatly increased by storing eggs in moist soil at either 4°C or room temperature.

Comparison of Meldola's Blue Staining and Hatching Assay with Potato Root Diffusate for Assessment of Globodera sp. Egg Viability.

Laboratory-based methods to test egg viability include staining with Meldola's Blue and/or juvenile (J2) hatching assays using potato root diffusate (PRD). These two methods have not been tested under identical conditions to directly compare their assessments of Globodera egg viability. Using two bioassay strategies, cysts from a Globodera sp. population found in Oregon were subjected to both viability assessment methods. In strategy one, intact cysts were first stained with Meldola's Blue (primary staining) and eggs were then transferred to PRD (secondary hatching). In the second strategy, intact cysts were exposed to PRD (primary hatching) and then unhatched eggs were transferred to Meldola's Blue (secondary staining). Two different cohorts of cysts were evaluated using these experimental strategies: cohort 1 was comprised of cysts produced on potato in the greenhouse that exhibited low hatch when exposed to PRD and cohort 2 consisted of field-collected cysts whose eggs yielded significant hatch when exposed to PRD. Percentage viability was calculated and is expressed as the number of hatched J2 or unstained eggs/total number of eggs within a cyst. With field-produced cysts, primary staining with Meldola's Blue and hatching with PRD produced similar viability estimates, with averages of 74.9% and 76.3%, respectively. In contrast, with greenhouse-produced cysts the two methods yielded much lower and unequal estimates 32.4% to 2.2%, respectively for primary hatching and staining methods. In addition, J2 hatch from unstained (viable) greenhouse-produced eggs was 13.7% after secondary exposure to PRD compared to 61.5% for field-produced eggs. The majority of eggs remaining unhatched after primary exposure to PRD (> 87%) stained with Meldola's Blue regardless of cyst cohort. Staining with Meldola's Blue provided a conservative assessment of egg viability compared to hatch assay with PRD regardless of diapause.

Plant-Parasitic Nematodes Associated with Reduced Wheat Yield in Oregon: Heterodera avenae.

Heterodera avenae is widely distributed in the western United States, where most wheat is grown in non-irrigated winter wheat/summer fallow rotations in low rainfall regions. Economic and social pressures have motivated growers to pursue a transition from winter wheat/summer fallow rotation to no-till annual spring cereals. Annual cereals are also planted in some irrigated fields. The impact of H. avenae on spring wheat yield in the Pacific Northwest had been observed but not quantified. Spring wheat was planted with or without aldicarb to examine relationships between H. avenae and yield under dryland and irrigated conditions in moderately infested fields. Spring wheat yields were negatively correlated (P < 0.05) with initial populations of H. avenae. Aldicarb application improved spring wheat yield as much as 24%. The infective juvenile stage of H. avenae reached a peak density during mid-spring. Yield of irrigated annual winter wheat was also negatively correlated with initial density of H. avenae. Research priorities necessary to develop control strategies include a description of the pathotype, identification of sources for genetic resistance, and integrated practices designed to manage multiple yield-reducing pests.

Soil Fumigant Effects on Three Genera of Potential Soilborne Pathogenic Fungi and Their Effect on Potato Yield in the Columbia Basin of Oregon.

During three years of trials in commercial production fields, populations of three genera of potato pathogens, Fusarium spp, Pythium spp, and Verticillium dahliae, were followed before and after the single or combination use of 1,3-dichloropropene (1,3-D), 1,3-D + 17% chloropicrin (1,3-D + chloropicrin), or metam sodium (MS). Populations of these fungi did not always increase during the growing season but the relative population at a soil depth of 0 to 30 cm was nearly always higher than at 30 to 60 cm, regardless of year, sampling time, or fungal pathogen. The use of MS alone or in combination with 1,3-D generally suppressed recovery of all three genera and also increased yields. 1,3-D or 1,3-D + chloropicrin did not reduce fungal populations, but 1,3-D increased yield in 1 of 3 years. Reduced rates of MS and 1,3-D used in combination were as effective as higher rates of MS used alone. Multiple regression analysis comparing yield with fungal populations before planting indicated that population size was correlated negatively with yield. Propagules of V. dahliae had the greatest impact in reducing yield, but propagules of Pythium spp. and Fusarium spp. may have been important when populations of V. dahliae were low. Soil populations of Fusarium spp. and Pythium spp. have not been reported previously to be associated with yield reductions in potato grown in the Columbia Basin. Threshold estimates suggested that yield of number one tubers was reduced by 1 metric ton/ha for each 0.6 to 3.0 V. dahliae CFU/g dry soil present at planting.