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1.
Phys Rev E Stat Nonlin Soft Matter Phys ; 79(2 Pt 1): 021116, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19391715

RESUMO

The Ginzburg-Landau model with two-order parameters appears in many condensed-matter problems. However, even for scalar order parameters, the most general U(1)-symmetric Landau potential with all quadratic and quartic terms contains 13 independent coefficients and cannot be minimized with straightforward algebra. Here, we develop a geometric approach that circumvents this computational difficulty and allows one to study properties of the model without knowing the exact position of the minimum. In particular, we find the number of minima of the potential, classify explicit symmetries possible in this model, establish conditions when and how these symmetries are spontaneously broken, and explicitly describe the phase diagram.

3.
Nucleic Acids Res ; 28(17): 3185-96, 2000 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-10954585

RESUMO

The efficiency of programmed ribosomal frameshifting in decoding antizyme mRNA is the sensor for an autoregulatory circuit that controls cellular polyamine levels in organisms ranging from the yeast Schizosaccharomyces pombe to Drosophila to mammals. Comparison of the frameshift sites and flanking stimulatory signals in many organisms now permits a reconstruction of the likely evolutionary path of the remarkably conserved mRNA sequences involved in the frameshifting.


Assuntos
Códon/genética , Sequência Conservada/genética , Evolução Molecular , Mudança da Fase de Leitura do Gene Ribossômico/genética , Poliaminas/metabolismo , RNA Catalítico/genética , Animais , Sequência de Bases , Retroalimentação , Humanos , Dados de Sequência Molecular , Conformação de Ácido Nucleico , Filogenia , RNA Catalítico/química , RNA Catalítico/metabolismo , RNA Mensageiro/química , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Sequências Reguladoras de Ácido Nucleico/genética , Alinhamento de Sequência
4.
Appl Biochem Biotechnol ; 87(2): 141-51, 2000 May.
Artigo em Inglês | MEDLINE | ID: mdl-10949695

RESUMO

A method for individual and simultaneous covalent immobilization of cholesterol oxidase and peroxidase to copolymer of acrylonitrile with acrylamide is described. The effect of immobilization on the catalytic properties of the covalently bound enzymes was studied. The immobilized enzymes showed no change in pH optima and an increase in temperature optima, activation energy, and Km' compared to data received from experiments with soluble enzymes. A small glass column packed with immobilized multienzyme complex was used to develop a method for manual determination of cholesterol in foodstuffs (e.g., in mayonnaise "Olinease"). The method was characterized by high analytical precision (coefficient of variation = 2.67%). The results show high correlation with those obtained by the Kageyama method (r = 0.986). The method is economical (the enzyme-carrier conjugate may be used more than 300 times), precise, easy to perform, and less time-consuming than the manual methods utilizing soluble enzymes. The established manual method can be proposed for cholesterol determination in foodstuffs.


Assuntos
Colesterol Oxidase/química , Peroxidase/química , Acrilamida/química , Acrilonitrila/química , Aspergillus niger/enzimologia , Catálise , Colesterol/análise , Detergentes/farmacologia , Análise de Alimentos , Concentração de Íons de Hidrogênio , Cinética , Membranas Artificiais , Modelos Químicos , Nocardia/enzimologia , Octoxinol/farmacologia , Polímeros , Temperatura
5.
EMBO J ; 19(8): 1907-17, 2000 Apr 17.
Artigo em Inglês | MEDLINE | ID: mdl-10775274

RESUMO

Regulation of ornithine decarboxylase in vertebrates involves a negative feedback mechanism requiring the protein antizyme. Here we show that a similar mechanism exists in the fission yeast Schizosaccharomyces pombe. The expression of mammalian antizyme genes requires a specific +1 translational frameshift. The efficiency of the frameshift event reflects cellular polyamine levels creating the autoregulatory feedback loop. As shown here, the yeast antizyme gene and several newly identified antizyme genes from different nematodes also require a ribosomal frameshift event for their expression. Twelve nucleotides around the frameshift site are identical between S.pombe and the mammalian counterparts. The core element for this frameshifting is likely to have been present in the last common ancestor of yeast, nematodes and mammals.


Assuntos
Mutação da Fase de Leitura , Poliaminas/metabolismo , Proteínas/química , Schizosaccharomyces/química , Sequência de Aminoácidos , Animais , Caenorhabditis elegans/genética , Sequência Conservada , Evolução Molecular , Deleção de Genes , Humanos , Dados de Sequência Molecular , Mutagênese , Biossíntese de Proteínas , Proteínas/genética , Putrescina/metabolismo , Homologia de Sequência de Aminoácidos , Espermidina/metabolismo , Espermina/metabolismo , Transcrição Gênica
6.
Proc Natl Acad Sci U S A ; 97(9): 4808-13, 2000 Apr 25.
Artigo em Inglês | MEDLINE | ID: mdl-10781085

RESUMO

Previous studies with mice overproducing ornithine decarboxylase have demonstrated the importance of polyamine homeostasis for normal mammalian spermatogenesis. The present study introduces a likely key player in the maintenance of proper polyamine homeostasis during spermatogenesis. Antizyme 3 is a paralog of mammalian ornithine decarboxylase antizymes. Like its previously described counterparts, antizymes 1 and 2, it inhibits ornithine decarboxylase, which catalyzes the synthesis of putrescine. Earlier work has shown that the coding sequences for antizymes 1 and 2 are in two different, partially overlapping reading frames. Ribosomes translate the first reading frame, and just before the stop codon for that frame, they shift to the second reading frame to synthesize a trans-frame product. The efficiency of this frameshifting depends on polyamine concentration, creating an autoregulatory circuit. Antizyme 3 cDNA has the same arrangement of reading frames and a potential shift site with definite, although limited, homology to its evolutionarily distant antizyme 1 and 2 counterparts. In contrast to antizymes 1 and 2, which are widely expressed throughout the body, antizyme 3 transcription is restricted to testis germ cells. Expression starts early in spermiogenesis and finishes in the late spermatid phase. The potential significance of antizyme 3 expression during spermatogenesis is discussed in this paper.


Assuntos
Inibidores Enzimáticos/farmacologia , Inibidores da Ornitina Descarboxilase , Proteínas/genética , Proteínas/farmacologia , Espermatogênese/fisiologia , Adulto , Sequência de Aminoácidos , Animais , Galinhas , Drosophila melanogaster , Humanos , Hibridização In Situ , Masculino , Camundongos , Dados de Sequência Molecular , Fases de Leitura Aberta , Filogenia , Proteínas/química , Túbulos Seminíferos/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Células de Sertoli/metabolismo , Testículo/metabolismo , Xenopus laevis
8.
Genomics ; 52(2): 119-29, 1998 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-9782076

RESUMO

A second mammalian ornithine decarboxylase antizyme was discovered. The deduced protein sequence of the human antizyme2 is 54% identical and 67% similar to human antizyme1 but 99.5% identical to mouse antizyme2. Polyamine-regulated programmed ribosomal frameshifting is used in decoding antizyme2 mRNA as it is for antizyme1 mRNA. The mRNA signals for the programmed frameshifting are similar in the mRNAs for the two antizymes. However, in the stimulatory pseudoknot 3' of the shift site, while the sequences of the stems are highly conserved, the sequences of the loops are divergent. Functional distinctions between antizymes seem likely, but no distinction in the tissue distribution of human antizyme1 and 2 mRNAs was distinguished, though antizyme2 mRNA is 16-fold less abundant than its antizyme1 counterpart. In addition to the previously characterized human antizyme1 mRNA, a second antizyme1 mRNA with an additional 160 nucleotides at its 3' end was identified, and it has a tissue distribution different from that of the shorter antizyme1 mRNA.


Assuntos
Isoenzimas/genética , Proteínas/genética , Sequência de Aminoácidos , Sequência de Bases , Sistema Livre de Células/química , Sistema Livre de Células/enzimologia , Sequência Conservada , DNA Complementar/química , DNA Complementar/genética , Mudança da Fase de Leitura do Gene Ribossômico , Expressão Gênica , Humanos , Dados de Sequência Molecular , Conformação de Ácido Nucleico , Biossíntese de Proteínas , RNA Mensageiro/química , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Fases de Leitura/genética , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , Homologia de Sequência do Ácido Nucleico , Distribuição Tecidual , Transcrição Gênica
9.
J Biol Chem ; 273(41): 26295-7, 1998 Oct 09.
Artigo em Inglês | MEDLINE | ID: mdl-9756857

RESUMO

beta-Aspartyl di- and tripeptides are common constituents of mammalian metabolism, but their formation and catabolism are not fully understood. In this study we provide evidence that glycosylasparaginase (aspartylglucosaminidase), an N-terminal nucleophile hydrolase involved in the hydrolysis of the N-glycosidic bond in glycoproteins, catalyzes the hydrolysis of beta-aspartyl peptides to form L-aspartic acid and amino acids or peptides. The enzyme also effectively catalyzes the synthesis of beta-aspartyl peptides by transferring the beta-aspartyl moiety from other beta-aspartyl peptides or beta-aspartylglycosylamine to a variety of amino acids and peptides. Furthermore, the enzyme can use L-asparagine as the beta-aspartyl donor in the formation of beta-aspartyl peptides. The data show that synthesis and degradation of beta-aspartyl peptides are new, significant functions of glycosylasparaginase and suggest that the enzyme could have an important role in the metabolism of beta-aspartyl peptides.


Assuntos
Ácido Aspártico/química , Aspartilglucosilaminase/metabolismo , Oligopeptídeos/biossíntese , Catálise , Hidrólise , Oligopeptídeos/química , Oligopeptídeos/metabolismo
10.
RNA ; 4(10): 1230-8, 1998 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-9769097

RESUMO

The coding sequence for mammalian ornithine decarboxylase antizyme is in two different partially overlapping reading frames with no independent ribosome entry to the second ORF. Immediately before the stop codon of the first ORF, a proportion of ribosomes undergo a quadruplet translocation event to shift to the +1 reading frame of the second and main ORF. The proportion that frameshifts is dependent on the polyamine level and, because the product antizyme is a negative regulator of intracellular polyamine levels, the frameshifting acts to complete an autoregulatory circuit by sensing polyamine levels. An mRNA element just 5' of the shift site and a 3' pseudoknot are important for efficient frameshifting. Previous work has shown that a cassette with the mammalian shift site and associated signals directs efficient shifting in the budding yeast Saccharomyces cerevisiae at the same codon to the correct frame, but that the shift is -2 instead of +1. The product contains an extra amino acid corresponding to the shift site. The present work shows efficient frameshifting also occurs in the fission yeast, Schizosaccharomyces pombe. This frameshifting is 80% +1 and 20% -2. The response of S. pombe translation apparatus to the mammalian antizyme recoding signals is more similar to that of the mammalian system than to that of S. cerevisiae. S. pombe provides a good model system for genetic studies on the mechanism of at least this type of programmed mammalian frameshifting.


Assuntos
Mudança da Fase de Leitura do Gene Ribossômico/genética , Proteínas/genética , Saccharomyces cerevisiae/genética , Schizosaccharomyces/genética , Sequência de Aminoácidos , Animais , Sequência de Bases , Sistema Livre de Células , Inibidores Enzimáticos , Dados de Sequência Molecular , Conformação de Ácido Nucleico , Inibidores da Ornitina Descarboxilase , RNA Mensageiro/química , RNA Mensageiro/genética , Ratos , Sequências Reguladoras de Ácido Nucleico/genética , Análise de Sequência
11.
Mol Cell Biol ; 18(3): 1553-61, 1998 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-9488472

RESUMO

Previously, a Drosophila melanogaster sequence with high homology to the sequence for mammalian antizyme (ornithine decarboxylase antizyme) was reported. The present study shows that homology of this coding sequence to its mammalian antizyme counterpart also extends to a 5' open reading frame (ORF) which encodes the amino-terminal part of antizyme and overlaps the +1 frame (ORF2) that encodes the carboxy-terminal three-quarters of the protein. Ribosomes shift frame from the 5' ORF to ORF2 with an efficiency regulated by polyamines. At least in mammals, this is part of an autoregulatory circuit. The shift site and 23 of 25 of the flanking nucleotides which are likely important for efficient frameshifting are identical to their mammalian homologs. In the reverse orientation, within one of the introns of the Drosophila antizyme gene, the gene for snRNP Sm D3 is located. Previously, it was shown that two closely linked P-element transposon insertions caused the gutfeeling phenotype of embryonic lethality and aberrant neuronal and muscle cell differentiation. The present work shows that defects in either snRNP Sm D3 or antizyme, or both, are likely causes of the phenotype.


Assuntos
Drosophila melanogaster/genética , Mudança da Fase de Leitura do Gene Ribossômico , Íntrons , Proteínas/genética , Ribonucleoproteínas Nucleares Pequenas/genética , Sequência de Aminoácidos , Animais , Sequência de Bases , Mapeamento Cromossômico , DNA Complementar , DNA de Cadeia Simples , Expressão Gênica , Genes de Insetos , Humanos , Dados de Sequência Molecular , Fases de Leitura Aberta , Biossíntese de Proteínas , RNA Mensageiro , Homologia de Sequência de Aminoácidos
12.
Arch Biochem Biophys ; 294(2): 703-6, 1992 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-1567226

RESUMO

A new substrate for subtilisins, anthraniloyl-Ala-Ala-Phe-4-nitroanilide, has been synthesized and characterized. The peptide is a fluorogenic substrate that is intramolecularly quenched without loss of its chromogenic properties and offers a possibility for double-assay kinetic analysis. The kinetic parameters determined for subtilisin Carlsberg are Km = 0.004 mM, kcat = 104 s-1, and those for subtilisin BPN' are Km = 0.020 mM, kcat = 49 s-1. The substrate is extremely sensitive for subtilisins; the specificity constants are 10-fold higher than the corresponding values for the widely used substrate, succinyl-Ala-Ala-Pro-Phe-4-nitroanilide, and 200- to 1000-fold higher than the values obtained with succinyl-Ala-Ala-Phe-4-nitroanilide. The favorable effect of the anthraniloyl group as a P4 residue in the substrate sequence Ala-Ala-Phe-4-nitroanilide was assumed to be due to an ability to stiffen S4-P4 interactions. The mechanism proposed is hydrogen bond formation between the phenol group of tyrosine-104 and the amino group of the anthraniloyl moiety. In the spectrophotometric assay with the new substrate, the lower detection limit for subtilisin Carlsberg was 1 nM.


Assuntos
Oligopeptídeos/metabolismo , Subtilisinas/metabolismo , Sequência de Aminoácidos , Animais , Bovinos , Quimotripsina/metabolismo , Indicadores e Reagentes , Cinética , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Oligopeptídeos/química , Especificidade por Substrato
13.
Lab Delo ; (10): 28-30, 1991.
Artigo em Russo | MEDLINE | ID: mdl-1722525

RESUMO

A method for manual measurement of glucose in biologic fluids has been developed, making use of glucose oxidase immobilized on a carbamide derivative of microcrystal cellulose; two variants are suggested: a rapid and a routine one. The method is characterized by a high analytical reliability, its results are in high correlation with the results of measurements by Beckman glucose analyzer (r = 0.92, p less than 0.001). The method is economic (glucose oxidase reagent may be used for more than 300 times), easily available, and is 3 to 6 times more rapid than the method with soluble glucose oxidase. It is particularly convenient for urgent laboratory diagnosis.


Assuntos
Glicemia/análise , Enzimas Imobilizadas , Glucose Oxidase
14.
Lab Delo ; (1): 29-31, 1990.
Artigo em Russo | MEDLINE | ID: mdl-1691334

RESUMO

An available method was developed for manual measurements of urea in biological fluids with the use of urease immobilized in sepharose gel. The suggested technique is more reagent-saving (the same reagent may be used for up to 500 times), 3-6-fold more rapid, and twice more sensitive than the routine phenolhypochlorite method with soluble urease. The method is characterized by a high analytical reliability, its results are in high correlation with the soluble urease procedure and with the diacetylmonoxime method (r = 07988 and 0.995, respectively). It is particularly fit for rapid analysis of the urea and convenient for small laboratories.


Assuntos
Enzimas Imobilizadas , Ureia/sangue , Urease , Humanos , Hidrólise , Indicadores e Reagentes , Nefropatias/diagnóstico , Fenol , Fenóis , Reprodutibilidade dos Testes , Sefarose
19.
Akush Ginekol (Sofiia) ; 28(5): 10-4, 1989.
Artigo em Búlgaro | MEDLINE | ID: mdl-2627028

RESUMO

A radionuclide method with quickly disintegrating 99MTC labelled human albumin and DTPA in a volume of 0.3-0.5 ml and activity of 37 mVk with two consecutive examinations of central and renal hemodynamics was used in 91 pregnant women with preeclampsia and pyelonephritis. Marked hypovolemia was found in all groups of investigated women with preeclampsia with the exception of the group of women with pyelonephritis. There was also difference in arterial pressure in women with preeclampsia I degree and pyelonephritis, which was statistically significant with advancement of gravity and duration of the disease. The investigation of the functional state of kidneys and blood flow showed a tendency to slowing both in the arterial and venous circulation in women with pre-eclampsia of pregnancy. In the pregnant women of this group and the women with pyelonephritis there was asymmetry in the curves of the blood flow as well as in the temporary indices of renal filtration, which were increases two-folds in comparison with the normal values. They were mostly manifested on the side of the involvement in women with pyelonephritis. Irradiation loading was 0.212 mZv of both examinations and was ten times less than that of x-ray pelvimetry.


Assuntos
Hemodinâmica/fisiologia , Rim/fisiopatologia , Pré-Eclâmpsia/fisiopatologia , Adolescente , Adulto , Feminino , Humanos , Hipertensão/complicações , Hipertensão/diagnóstico por imagem , Hipertensão/fisiopatologia , Ácido Pentético , Pré-Eclâmpsia/diagnóstico por imagem , Pré-Eclâmpsia/etiologia , Gravidez , Pielonefrite/complicações , Pielonefrite/diagnóstico por imagem , Pielonefrite/fisiopatologia , Renografia por Radioisótopo/métodos , Tecnécio , Agregado de Albumina Marcado com Tecnécio Tc 99m
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