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1.
Genome Biol Evol ; 6(3): 685-702, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24586028

RESUMO

Studies of Hordeum vulgare subsp. spontaneum, the wild progenitor of cultivated barley, have mostly relied on materials collected decades ago and maintained since then ex situ in germplasm repositories. We analyzed spatial genetic variation in wild barley populations collected rather recently, exploring sequence variations at seven single-copy nuclear loci, and inferred the relationships among these populations and toward the genepool of the crop. The wild barley collection covers the whole natural distribution area from the Mediterranean to Middle Asia. In contrast to earlier studies, Bayesian assignment analyses revealed three population clusters, in the Levant, Turkey, and east of Turkey, respectively. Genetic diversity was exceptionally high in the Levant, while eastern populations were depleted of private alleles. Species distribution modeling based on climate parameters and extant occurrence points of the taxon inferred suitable habitat conditions during the ice-age, particularly in the Levant and Turkey. Together with the ecologically wide range of habitats, they might contribute to structured but long-term stable populations in this region and their high genetic diversity. For recently collected individuals, Bayesian assignment to geographic clusters was generally unambiguous, but materials from genebanks often showed accessions that were not placed according to their assumed geographic origin or showed traces of introgression from cultivated barley. We assign this to gene flow among accessions during ex situ maintenance. Evolutionary studies based on such materials might therefore result in wrong conclusions regarding the history of the species or the origin and mode of domestication of the crop, depending on the accessions included.


Assuntos
Evolução Molecular , Loci Gênicos , Hordeum/genética , Alelos , Teorema de Bayes , DNA de Plantas/genética , Fluxo Gênico , Variação Genética , Dados de Sequência Molecular , Família Multigênica , Técnicas de Amplificação de Ácido Nucleico , Filogeografia , Análise de Sequência de DNA , Turquia
2.
Oncoimmunology ; 1(4): 529-530, 2012 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-22754774

RESUMO

Expression or release of immunosuppressive molecules may protect tumor cells from the recognition and destruction by the immune system. New findings indicate that colorectal tumors produce immunoregulatory glucocorticoids and thereby suppress immune cell activation. The nuclear receptor LRH-1 plays a critical role in the regulation of colorectal tumor proliferation and glucocorticoid synthesis.

3.
PLoS One ; 7(3): e33808, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22479447

RESUMO

Polyploidization is a major mechanism of speciation in plants. Within the barley genus Hordeum, approximately half of the taxa are polyploids. While for diploid species a good hypothesis of phylogenetic relationships exists, there is little information available for the polyploids (4×, 6×) of Hordeum. Relationships among all 33 diploid and polyploid Hordeum species were analyzed with the low-copy nuclear marker region TOPO6 for 341 Hordeum individuals and eight outgroup species. PCR products were either directly sequenced or cloned and on average 12 clones per individual were included in phylogenetic analyses. In most diploid Hordeum species TOPO6 is probably a single-copy locus. Most sequences found in polyploid individuals phylogenetically cluster together with sequences derived from diploid species and thus allow the identification of parental taxa of polyploids. Four groups of sequences occurring only in polyploid taxa are interpreted as footprints of extinct diploid taxa, which contributed to allopolyploid evolution. Our analysis identifies three key species involved in the evolution of the American polyploids of the genus. (i) All but one of the American tetraploids have a TOPO6 copy originating from the Central Asian diploid H. roshevitzii, the second copy clustering with different American diploid species. (ii) All hexaploid species from the New World have a copy of an extinct close relative of H. californicum and (iii) possess the TOPO6 sequence pattern of tetraploid H. jubatum, each with an additional copy derived from different American diploids. Tetraploid H. bulbosum is an autopolyploid, while the assumed autopolyploid H. brevisubulatum (4×, 6×) was identified as allopolyploid throughout most of its distribution area. The use of a proof-reading DNA polymerase in PCR reduced the proportion of chimerical sequences in polyploids in comparison to Taq polymerase.


Assuntos
Dosagem de Genes , Genes de Plantas , Hordeum/classificação , Hordeum/genética , Poliploidia , DNA de Plantas/genética , DNA Polimerase Dirigida por DNA/genética , Filogenia , Análise de Sequência de DNA
4.
Mol Ecol ; 19(7): 1423-38, 2010 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-20456231

RESUMO

In this study, we explore the interplay of population demography with the evolution of ecological niches during or after speciation in Hordeum. While large populations maintain a high level of standing genetic diversity, gene flow and recombination buffers against fast alterations in ecological adaptation. Small populations harbour lower allele diversity but can more easily shift to new niches if they initially survive under changed conditions. Thus, large populations should be more conservative regarding niche changes in comparison to small populations. We used environmental niche modelling together with phylogenetic, phylogeographic and population genetic analyses to infer the correlation of population demography with changes in ecological niche dimensions in 12 diploid Hordeum species from the New World, forming four monophyletic groups. Our analyses found both shifts and conservatism in distinct niche dimensions within and among clades. Speciation due to vicariance resulted in three species with no pronounced climate niche differences, while species originating due to long-distance dispersals or otherwise encountering genetic bottlenecks mostly revealed climate niche shifts. Niche convergence among clades indicates a niche-filling pattern during the last 2 million years in South American Hordeum. We provide evidence that species, which did not encounter population reductions mainly showed ecoclimatic niche conservatism, while major niche shifts occurred in species which have undergone population bottlenecks. Our data allow the conclusion that population demography influences adaptation and niche shifts or conservatism in South American Hordeum species.


Assuntos
Ecossistema , Evolução Molecular , Especiação Genética , Hordeum/genética , Clima , DNA de Plantas/genética , Variação Genética , Genética Populacional , Modelos Biológicos , Modelos Genéticos , América do Norte , Filogenia , Análise de Sequência de DNA , América do Sul
5.
Mol Phylogenet Evol ; 55(2): 650-9, 2010 May.
Artigo em Inglês | MEDLINE | ID: mdl-19850141

RESUMO

Wall barley (Hordeum murinum) occurs with three subspecies, naturally distributed from southern Central Asia through the Mediterranean region to northwestern Europe, but now is an invasive weed in many parts of the world. Subspecies glaucum is diploid, while subspp. murinum and leporinum are tetraploids, the latter also occurring with a hexaploid cytotype. Earlier analyses were inconclusive regarding auto- or allopolyploid origins of subspp. murinum and leporinum. We analyzed the phylogeny of the taxon group using amplified fragment length polymorphisms (AFLP), sequences of cloned PCR products of the nuclear ribosomal DNA internal transcribed spacer region (ITS), a part of the nuclear single-copy gene topoisomerase 6 (Topo6) spanning two introns, and sequences of the chloroplast trnL-F region together with length variation at six chloroplast microsatellite loci, including multiple individuals of each subspecies and cytotype, covering the entire natural distribution area of the species. Phylogenetic analyses with all used markers differentiate diploid and polyploids. Sequences of both nuclear regions indicated that diploid subsp. glaucum was involved in tetraploid formation together with a now extinct species belonging to the same Hordeum genome group (Xu). Furthermore, AFLP and ITS analyses suggest that a third, though closely related extinct taxon contributed to hexaploid formation. No method was able to discern tetraploid subspp. murinum and leporinum, which we attribute to the young age of subsp. murinum. None of the used molecular markers revealed a strong geographic pattern of genetic variation that would allow comprehensive phylogeographic analysis, most probably due to the very effective seed dispersal of the taxa.


Assuntos
Evolução Molecular , Hordeum/genética , Filogenia , Poliploidia , Análise do Polimorfismo de Comprimento de Fragmentos Amplificados , DNA Topoisomerases/genética , DNA de Cloroplastos/genética , DNA de Plantas/genética , DNA Espaçador Ribossômico/genética , Diploide , Variação Genética , Hordeum/classificação , Íntrons , Repetições de Microssatélites , Análise de Sequência de DNA
6.
Ann N Y Acad Sci ; 1171: 50-8, 2009 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-19723037

RESUMO

The death ligand members of the tumor necrosis factor (TNF) family are potent inducers of apoptosis in a variety of cell types. In particular, TNF-related apoptosis-inducing ligand (TRAIL) has recently received much scientific and commercial attention because of its potent tumor cell-killing activity while leaving normal untransformed cells mostly unaffected. Furthermore, TRAIL strongly synergizes with conventional chemotherapeutic drugs in inducing tumor cell apoptosis, making it a most promising candidate for future cancer therapy. Increasing evidence indicates, however, that TRAIL may also induce or modulate apoptosis in primary cells. A particular concern is the potential side effect of TRAIL-based tumor therapies in the liver. In this review we summarize some of the recent findings on the role of TRAIL in tumor cell and hepatocyte apoptosis.


Assuntos
Apoptose/efeitos dos fármacos , Neoplasias/tratamento farmacológico , Ligante Indutor de Apoptose Relacionado a TNF/farmacologia , Animais , Linhagem Celular Tumoral , Doença Hepática Induzida por Substâncias e Drogas , Hepatócitos/efeitos dos fármacos , Hepatócitos/patologia , Humanos , Camundongos , Neoplasias/patologia , Ligante Indutor de Apoptose Relacionado a TNF/efeitos adversos , Ligante Indutor de Apoptose Relacionado a TNF/uso terapêutico , Ensaios Antitumorais Modelo de Xenoenxerto
7.
Vet Res ; 40(6): 58, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-19631032

RESUMO

Little is currently known about the lymphocyte populations in the normal and diseased canine gut. The aim of this study was thus the phenotypical and functional characterization of canine intestinal intraepithelial lymphocytes (IEL). IEL were isolated from full-thickness biopsies of 15 adult Swiss Beagle dogs (mean age 8.2 +/-2.8 years) and compared to mesenteric lymph node cells. The phenotypical characterization by multi-parameter flow cytometry revealed that canine IEL differ substantially from lymph node T cells, and consist of various unconventional lymphocyte subsets, unique to mucosal surfaces. These include gammasigma T cells, and CD4(-)CD8(-) and CD8alphaalpha(+) T cells. IEL populations in adult dogs were also compared to those isolated from neonatal Beagle dogs. Analysis revealed a high frequency of undifferentiated CD4(-)CD8(-) T cells in newborn dogs whereas mature CD4(+) and CD8(+) T cells predominate in adult dogs, indicating maturation of the intestinal immune system during development. As IEL in other species are thought to exhibit regulatory functions, we investigated the role of IEL on the activation-induced proliferation of lymph node T cells. While IEL alone did not show activation-induced proliferation, they significantly inhibited the proliferation of activated lymph node T cells in a cell number-dependent manner. These findings are the first to demonstrate that canine intestinal IEL have an immunoregulatory phenotype, which may contribute to the maintenance of intestinal immune homeostasis and may, therefore, be lost in canine chronic enteropathies.


Assuntos
Mucosa Intestinal/citologia , Linfócitos/classificação , Linfócitos/fisiologia , Animais , Cães , Feminino , Regulação da Expressão Gênica , Masculino , Mitógenos , Receptores de Antígenos de Linfócitos T/genética , Receptores de Antígenos de Linfócitos T/metabolismo
8.
Mol Biol Evol ; 26(4): 907-23, 2009 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19168565

RESUMO

Although many phylogeographic studies have been conducted to analyze the impact of the ice age on species history of Northern Hemisphere mountain plants, such studies are nearly absent for plants of the Southern Hemisphere, particularly for lowland vegetation units. These species should have been primarily influenced by climate cooling and changes in precipitation regime instead of glaciers covering their distribution areas. It is thought that New World lowland species generally evaded climate changes by equatorial migration during Pleistocene cold cycles and recolonized their habitats at higher latitudes when climate warmed up again. In contrast to Eurasia, latitudinal orientation of the major mountain ranges in the Americas made these migrations easily possible. In the huge steppe of the Patagonian plains and adjacent Andes of southern South America thrives a group of three sympatrically distributed diploid species of the barley genus Hordeum, which originated during the last 1.3 million years (My) from a common progenitor. To get insights into the speciation mode of the taxa and to test the hypothesis of longitudinal migration of steppe vegetation during the Pleistocene, we conducted population genetic and phylogeographic analyses based on sequences of the chloroplast trnL-F region from 922 individuals. We found a high number of chloroplast haplotypes shared among species, which indicate speciation through vicariance events. Analysis of the distribution of genetic diversity within and among species inferred an origin of Hordeum comosum in the Central Argentine Andes, whereas Hordeum patagonicum and Hordeum pubiflorum originated in southern Patagonia. The extant occurrence of H. comosum in southern Patagonia and H. pubiflorum northward along the Argentine Andes was caused by reciprocal migration after the origin of the species. Surprisingly, molecular data provided no evidence for range shifts toward the north during the last glacial maximum and recolonization of southerly habitats afterward, but indicated in situ survival of large populations of Hordeum species within their extant distribution ranges even in southernmost Patagonia and Tierra del Fuego. Ecoclimatic niche modeling used to reconstruct the potential paleodistribution areas of the species during the last glacial maximum shows that climate conditions were sufficient for the species to survive Pleistocene cold cycles in Patagonia without significant geographic restrictions. Molecular data together with ecological niche modeling indicate stable geographic distribution areas in two of the three species for at least the Holocene. As the Hordeum species are characteristic taxa of different steppe habitats, we speculate that the Patagonian steppe might be an old vegetation unit occurring for up to 4.5 My in southern South America.


Assuntos
Especiação Genética , Hordeum/genética , Evolução Biológica , Clima , Ecologia , Hordeum/classificação , Filogenia , América do Sul
9.
Methods ; 44(3): 255-61, 2008 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-18314057

RESUMO

Cell death induction by apoptosis is an important process in the maintenance of tissue homeostasis as well as tissue destruction during various pathological processes. Consequently, detection of apoptotic cells in situ represents an important technique to assess the extent and impact of cell death in the respective tissue. While scoring of apoptosis by histological assessment of apoptotic cells is still a widely used method, it is likely biased by sensitivity problems and observed-based variations. The availability of caspase-mediated neo-epitope-specific antibodies offers new tools for the detection of apoptosis in situ. Here, we discuss the use of immunohistochemical detection of cleaved caspase 3 and lamin A for the assessment of apoptotic cells in paraffin-embedded liver tissue. Furthermore, we evaluate the effect of tissue pretreatment and antigen retrieval on the sensitivity of apoptosis detection, background staining and maintenance of tissue morphology.


Assuntos
Apoptose , Caspase 3/análise , Laminina/análise , Animais , Caspase 3/imunologia , Epitopos , Feminino , Imuno-Histoquímica , Laminina/imunologia , Camundongos , Camundongos Endogâmicos C57BL , Receptor fas/fisiologia
10.
Pathology ; 39(6): 558-64, 2007 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-18027258

RESUMO

AIMS: The induction of tumour cell death by apoptosis is a major goal of cancer therapy and the in situ detection of apoptosis in tumour tissue has become an important diagnostic parameter. Different apoptosis detection methods assess distinct biochemical processes in the dying cell. Thus, their direct comparison is mandatory to evaluate their diagnostic value. The aim of this study was to compare the immunohistochemical detection of active caspase 3 and single-stranded DNA in primary and metastatic liver tumours as markers of apoptotic cell death. METHODS: We studied detection of active caspase 3 and single-stranded DNA in 20 primary hepatocellular carcinomas (HCC) and 20 liver metastases from colorectal carcinomas (CRC) using immunohistochemistry on paraffin sections. RESULTS: Our results reveal that both methods are suitable and sensitive techniques for the in situ detection of apoptosis, however, they also demonstrate that immunohistochemistry for active caspase 3 and single-stranded DNA have differential sensitivities in HCC and CRC. CONCLUSION: The sensitivity of apoptosis detection using immunohistochemistry for active caspase 3 and single-stranded DNA may be tumour cell type dependent.


Assuntos
Apoptose , Carcinoma Hepatocelular/enzimologia , Carcinoma Hepatocelular/genética , Caspase 3/metabolismo , Neoplasias Colorretais/enzimologia , Fragmentação do DNA , Neoplasias Hepáticas/enzimologia , Neoplasias Hepáticas/genética , Adulto , Idoso , Idoso de 80 Anos ou mais , Biomarcadores Tumorais , Carcinoma Hepatocelular/secundário , Linhagem Celular Tumoral , Neoplasias Colorretais/genética , Neoplasias Colorretais/patologia , DNA de Neoplasias , DNA de Cadeia Simples , Feminino , Humanos , Técnicas Imunoenzimáticas , Neoplasias Hepáticas/secundário , Masculino , Pessoa de Meia-Idade
11.
Mol Ecol ; 16(8): 1713-27, 2007 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-17402985

RESUMO

The Hordeum marinum species group consists of two annual grasses of western Eurasian saline meadows or marshes. The two grasses split in the Quaternary about two million years ago. Hordeum marinum and the diploid of Hordeum gussoneanum (2x) co-occur throughout the Mediterranean basin, while the autotetraploid cytotype of H. gussoneanum (4x) overlaps with its diploid progenitor geographically only in the utmost Eastern Mediterranean, extending from there eastwards into Asia. Using chloroplast sequences of the trnL-F region, six newly developed chloroplast microsatellite loci, ecological predictive models based on climate data, and the present geographical distribution of the two species we analysed differentiation processes in the H. marinum group. The chloroplast data indicated clear differences in the history of both species. For H. marinum we found a subdivision between genetically variable populations from the Iberian Peninsula and the more uniform populations from the remaining Mediterranean. As an explanation, we assume Pleistocene fragmentation of an earlier widespread population and survival in an Iberian and a Central Mediterranean glacial refuge. Chloroplast variation was completely absent within the cytotypes of H. gussoneanum, indicating a severe and recent genetic bottleneck. Due to this lack of chloroplast variation only the combination of ecological habitat modelling with molecular data analyses allowed conclusions about the history of this taxon. The distribution areas of the two cytotypes of H. gussoneanum overlap today in parts of Turkey, indicating an area with similar climate conditions during polyploid formation. However, after its origin the polyploid cytotype underwent a pronounced ecological shift, compared to its diploid progenitor, allowing it to colonize mountainous inland habitats between the Mediterranean basin and Afghanistan. The extant sympatric occurrence of H. marinum and H. gussoneanum 2x in the Mediterranean region is interpreted as a result of secondary contact after fast Holocene range expansion out of different ice age refugia.


Assuntos
Ecossistema , Evolução Molecular , Variação Genética , Hordeum/classificação , Filogenia , DNA de Cloroplastos/química , Especiação Genética , Geografia , Haplótipos , Hordeum/genética , Hordeum/crescimento & desenvolvimento , Região do Mediterrâneo , Repetições de Microssatélites , Modelos Biológicos , Análise de Sequência de DNA
12.
J Clin Invest ; 116(9): 2493-9, 2006 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-16955144

RESUMO

TNF-related apoptosis-inducing ligand (TRAIL) is a member of the TNF family with potent apoptosis-inducing properties in tumor cells. In particular, TRAIL strongly synergizes with conventional chemotherapeutic drugs to induce tumor cell death. Thus, TRAIL has been proposed as a promising future cancer therapy. Little, however, is known regarding what the role of TRAIL is in normal untransformed cells and whether therapeutic administration of TRAIL, alone or in combination with other apoptotic triggers, may cause tissue damage. In this study, we investigated the role of TRAIL in Fas-induced (CD95/Apo-1-induced) hepatocyte apoptosis and liver damage. While TRAIL alone failed to induce apoptosis in isolated murine hepatocytes, it strongly amplified Fas-induced cell death. Importantly, endogenous TRAIL was found to critically regulate anti-Fas antibody-induced hepatocyte apoptosis, liver damage, and associated lethality in vivo. TRAIL enhanced anti-Fas-induced hepatocyte apoptosis through the activation of JNK and its downstream substrate, the proapoptotic Bcl-2 homolog Bim. Consistently, TRAIL- and Bim-deficient mice and wild-type mice treated with a JNK inhibitor were protected against anti-Fas-induced liver damage. We conclude that TRAIL and Bim are important response modifiers of hepatocyte apoptosis and identify liver damage and lethality as a possible risk of TRAIL-based tumor therapy.


Assuntos
Proteínas Reguladoras de Apoptose/genética , Proteínas Reguladoras de Apoptose/metabolismo , Fígado/patologia , MAP Quinase Quinase 4/metabolismo , Glicoproteínas de Membrana/genética , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Proteínas Proto-Oncogênicas/genética , Proteínas Proto-Oncogênicas/metabolismo , Fator de Necrose Tumoral alfa/genética , Receptor fas/toxicidade , Animais , Apoptose , Proteínas Reguladoras de Apoptose/deficiência , Proteína 11 Semelhante a Bcl-2 , Morte Celular , Cruzamentos Genéticos , Ativação Enzimática , Hepatócitos/citologia , Hepatócitos/fisiologia , Imuno-Histoquímica , Fígado/efeitos dos fármacos , Glicoproteínas de Membrana/deficiência , Proteínas de Membrana/deficiência , Camundongos , Camundongos Endogâmicos BALB C , Camundongos Endogâmicos C57BL , Camundongos Knockout , Fosforilação , Proteínas Proto-Oncogênicas/deficiência , Ligante Indutor de Apoptose Relacionado a TNF , Fator de Necrose Tumoral alfa/deficiência
13.
J Exp Med ; 203(9): 2057-62, 2006 Sep 04.
Artigo em Inglês | MEDLINE | ID: mdl-16923850

RESUMO

The nuclear receptor liver receptor homologue-1 (LRH-1, NR5A2) is a crucial transcriptional regulator of many metabolic pathways. In addition, LRH-1 is expressed in intestinal crypt cells where it regulates the epithelial cell renewal and contributes to tumorigenesis through the induction of cell cycle proteins. We have recently identified the intestinal epithelium as an important extra-adrenal source of immunoregulatory glucocorticoids. We show here that LRH-1 promotes the expression of the steroidogenic enzymes and the synthesis of corticosterone in murine intestinal epithelial cells in vitro. Interestingly, LRH-1 is also essential for intestinal glucocorticoid synthesis in vivo, as LRH-1 haplo-insufficiency strongly reduces the intestinal expression of steroidogenic enzymes and glucocorticoid synthesis upon immunological stress. These results demonstrate for the first time a novel role for LRH-1 in the regulation of intestinal glucocorticoid synthesis and propose LRH-1 as an important regulator of intestinal tissue integrity and immune homeostasis.


Assuntos
Regulação da Expressão Gênica , Glucocorticoides/biossíntese , Mucosa Intestinal/metabolismo , Receptores Citoplasmáticos e Nucleares/metabolismo , Glândulas Suprarrenais/metabolismo , Animais , Linhagem Celular , Enzima de Clivagem da Cadeia Lateral do Colesterol/genética , Enzima de Clivagem da Cadeia Lateral do Colesterol/metabolismo , Células Epiteliais/citologia , Células Epiteliais/imunologia , Células Epiteliais/metabolismo , Mucosa Intestinal/citologia , Mucosa Intestinal/imunologia , Ativação Linfocitária , Camundongos , Regiões Promotoras Genéticas , Receptores Citoplasmáticos e Nucleares/genética , Esteroide 11-beta-Hidroxilase/genética , Esteroide 11-beta-Hidroxilase/metabolismo , Linfócitos T/metabolismo
14.
Mol Biol Evol ; 23(8): 1602-12, 2006 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-16754643

RESUMO

To analyze reasons for inconclusive results of earlier chloroplast phylogenies in the grass genus Hordeum, we established a genealogy of chloroplast haplotypes by sequencing the trnL-trnF region in 875 individuals, covering all 31 species of the genus. Although the outcomes of phenetic and parsimony analyses of 88 haplotypes were ambiguous, a network approach showed that in Hordeum ancient chloroplast types co-occur with their descendants. Moreover, we found up to 18 different chloroplast haplotypes within a single species and up to 6 species sharing single haplotypes. Persisting polymorphisms together with incomplete lineage sorting occurred preferentially in the rapidly speciating New World taxa of the genus, where ancient chloroplast types have survived for at least 4 Myr. Lineages-through-time plots and a high number of missing chloroplast haplotypes indicated far-reaching extinction of chloroplast lineages in Europe and particularly the Mediterranean. Survival of these lineages in East Asia and North America resulted in chloroplast relationships that markedly differed from nuclear estimations of species relationships. Thus, even for the deepest splits in the genus, reaching back more than 9 Myr, no safe phylogenetic inference from chloroplast data is possible in Hordeum. The chloroplast genealogy, however, revealed biogeographic patterns and indicated processes involved in speciation in Hordeum. We conclude that the described phenomena are not restricted to Hordeum and that the knowledge of the chloroplast relationships within a genus is indispensable to prevent misinterpretation of phylogeographic data within single species.


Assuntos
Cloroplastos/genética , DNA de Cloroplastos/genética , Haplótipos , Hordeum/genética , Filogenia , DNA Intergênico , Evolução Molecular , Variação Genética , Especificidade da Espécie
15.
J Exp Med ; 200(12): 1635-46, 2004 Dec 20.
Artigo em Inglês | MEDLINE | ID: mdl-15596520

RESUMO

Glucocorticoids (GCs) are important steroid hormones with widespread activities in metabolism, development, and immune regulation. The adrenal glands are the major source of GCs and release these hormones in response to psychological and immunological stress. However, there is increasing evidence that GCs may also be synthesized by nonadrenal tissues. Here, we report that the intestinal mucosa expresses steroidogenic enzymes and releases the GC corticosterone in response to T cell activation. T cell activation causes an increase in the intestinal expression of the steroidogenic enzymes required for GC synthesis. In situ hybridization analysis revealed that these enzymes are confined to the crypt region of the intestinal epithelial layer. Surprisingly, in situ-produced GCs exhibit both an inhibitory and a costimulatory role on intestinal T cell activation. In the absence of intestinal GCs in vivo, activation by anti-CD3 injection resulted in reduced CD69 expression and interferon-gamma production by intestinal T cells, whereas activation by viral infection led to increased T cell activation. We conclude that the intestinal mucosa is a potent source of immunoregulatory GCs.


Assuntos
Regulação da Expressão Gênica/imunologia , Glucocorticoides/metabolismo , Mucosa Intestinal/metabolismo , Ativação Linfocitária/imunologia , Linfócitos T/imunologia , Glândulas Suprarrenais/metabolismo , Animais , Anticorpos Monoclonais/administração & dosagem , Anticorpos Monoclonais/imunologia , Antígenos CD/biossíntese , Antígenos de Diferenciação de Linfócitos T/biossíntese , Infecções por Arenaviridae/imunologia , Infecções por Arenaviridae/patologia , Complexo CD3/imunologia , Glucocorticoides/imunologia , Interferon gama/biossíntese , Lectinas Tipo C , Vírus da Coriomeningite Linfocítica/imunologia , Camundongos , Camundongos Transgênicos
16.
Exp Cell Res ; 299(1): 227-35, 2004 Sep 10.
Artigo em Inglês | MEDLINE | ID: mdl-15302589

RESUMO

Fas (CD95/APO-1) ligand is a member of the Tumor Necrosis Factor family and a potent inducer of apoptosis. Fas ligand is expressed in activated T cells and represents a major cytotoxic effector mechanism by which T cells kill their target cells. Activation-induced Fas ligand expression in T cells is under the stringent control of various transcription factors, including nuclear factor kappaB (NFkappaB) and c-Myc/Max. There is accumulating evidence that Fas ligand is also expressed by various non-hematopoietic tumor cells, however, little is known about Fas ligand regulation in tumor cells. In this study, we have analyzed the regulation of the Fas ligand gene promoter induction in two non-small cell lung cancer cell lines, with a major focus on the role of the c-Myc/Max transcription factor. Our results revealed that inhibition of c-Myc/Max did not substantially reduce basal levels of Fas ligand promoter activity, nor did overexpression of c-Myc significantly induce promoter activity. In contrast, we observed that overexpression of Max resulted in a marked increase in basal promoter activity and synergistically enhanced phorbolester- and doxorubicin-induced NFkappaB-mediated Fas ligand promoter activity. These results were confirmed by analyzing endogenous Fas ligand transcription. We conclude that high levels of Max and stress-induced NFkappaB activation may result in elevated expression of Fas ligand in human lung cancer cells and possibly contribute to Fas ligand-associated immune escape mechanisms.


Assuntos
Carcinoma Pulmonar de Células não Pequenas/metabolismo , Proteínas de Ligação a DNA/metabolismo , Neoplasias Pulmonares/metabolismo , Glicoproteínas de Membrana/genética , NF-kappa B/metabolismo , Regiões Promotoras Genéticas/genética , Fatores de Transcrição/metabolismo , Fatores de Transcrição de Zíper de Leucina e Hélice-Alça-Hélix Básicos , Fatores de Transcrição de Zíper de Leucina Básica , Carcinoma Pulmonar de Células não Pequenas/genética , Carcinoma Pulmonar de Células não Pequenas/imunologia , Linhagem Celular Tumoral , Proteínas de Ligação a DNA/genética , Doxorrubicina/farmacologia , Proteína Ligante Fas , Regulação Neoplásica da Expressão Gênica/genética , Genes Reguladores/genética , Humanos , Neoplasias Pulmonares/genética , Neoplasias Pulmonares/imunologia , NF-kappa B/genética , Ésteres de Forbol/farmacologia , Proteínas Proto-Oncogênicas c-myc/genética , Estresse Fisiológico/genética , Estresse Fisiológico/metabolismo , Fatores de Transcrição/genética , Transcrição Gênica/genética , Evasão Tumoral/genética , Regulação para Cima/genética
17.
J Biol Chem ; 279(36): 37334-42, 2004 Sep 03.
Artigo em Inglês | MEDLINE | ID: mdl-15215233

RESUMO

Fas (CD95/Apo-1) ligand-mediated apoptosis has been recognized as an important mechanism of cell-mediated cytotoxicity and maintenance of immune homeostasis. Chronically activated T cells undergo activation-induced cell death (AICD), which depends on simultaneous Fas and Fas ligand expression. Previous reports have suggested that AICD might be linked to cell cycle progression of T cells and therefore to the expression of cell cycle-related molecules. In particular, cyclin B1 has been implicated in the induction of AICD in T cells. In this study, we have investigated the role of cyclin B1 in AICD and the expression of effector molecules involved in this form of cell death. Our results show that inhibition of cyclin B1 blocks AICD in T cells through specific inhibition of Fas ligand expression but not Fas-induced apoptosis. This effect of cyclin B1 appears to be mediated through the cyclin B1/cyclin-dependent kinase 1 (Cdk1/Cdc2) complex because overexpression of cyclin B1 enhances FasL promoter activity, whereas a dominant-negative version of Cdk1 blocks Fas ligand promoter induction. We provide further evidence that cyclin B1/Cdk1 regulates FasL transcription through the regulation of NFkappaB activation because dominant-negative Cdk1 inhibits activation-induced NFkappaB reporter and Rel A-induced FasL promoter activity. In conclusion, our data support a link between cell cycle progression, activation-induced Fas ligand expression, and apoptosis in T cells.


Assuntos
Proteína Quinase CDC2/fisiologia , Ciclina B/fisiologia , Linfócitos T/metabolismo , Receptor fas/metabolismo , Animais , Sequência de Bases , Proteína Quinase CDC2/metabolismo , Linhagem Celular , Ciclina B/metabolismo , Ciclina B1 , Primers do DNA , Humanos , Células Jurkat , Camundongos , NF-kappa B/metabolismo , Regiões Promotoras Genéticas , Reação em Cadeia da Polimerase Via Transcriptase Reversa
18.
Mol Biol Evol ; 21(5): 860-9, 2004 May.
Artigo em Inglês | MEDLINE | ID: mdl-15014163

RESUMO

Genome size variation in plants is thought to be correlated with cytological, physiological, or ecological characters. However, conclusions drawn in several studies were often contradictory. To analyze nuclear genome size evolution in a phylogenetic framework, DNA contents of 134 accessions, representing all but one species of the barley genus Hordeum L., were measured by flow cytometry. The 2C DNA contents were in a range from 6.85 to 10.67 pg in diploids (2n = 14) and reached up to 29.85 pg in hexaploid species (2n = 42). The smallest genomes were found in taxa from the New World, which became secondarily annual, whereas the largest diploid genomes occur in Eurasian annuals. Genome sizes of polyploid taxa equaled mostly the added sizes of their proposed progenitors or were slightly (1% to 5%) smaller. The analysis of ancestral genome sizes on the base of the phylogeny of the genus revealed lineages with decreasing and with increasing genome sizes. Correlations of intraspecific genome size variation with the length of vegetation period were found in H. marinum populations from Western Europe but were not significant within two species from South America. On a higher taxonomical level (i.e., for species groups or the entire genus), environmental correlations were absent. This could mostly be attributed to the superimposition of life-form changes and phylogenetic constraints, which conceal ecogeographical correlations.


Assuntos
Genoma de Planta , Hordeum/genética , Núcleo Celular/metabolismo , DNA/metabolismo , DNA Ribossômico/genética , Diploide , Ecologia , Evolução Molecular , Citometria de Fluxo , Genes de Plantas , Genoma , Filogenia , Sementes/metabolismo , Especificidade da Espécie , Estatística como Assunto , Temperatura
19.
Semin Immunol ; 15(3): 167-76, 2003 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-14563115

RESUMO

Members of the tumor necrosis factor (TNF) superfamily are crucially involved in the regulation of T cell activation, homeostasis and cytotoxicity. In particular, Fas ligand (FasL), expressed by activated T lymphocytes, induces cell-mediated cytotoxicity and may also be responsible for apoptotic suicide. Tight regulation of this death-inducing ligand is a prerequisite for proper immune defense and homeostasis. In this review, we will discuss various aspects of FasL regulation in cell-mediated cytotoxicity, immune homeostasis and the immunopathology of diseases.


Assuntos
Citotoxicidade Imunológica , Homeostase , Glicoproteínas de Membrana/metabolismo , Linfócitos T/imunologia , Linfócitos T/patologia , Animais , Proteína Ligante Fas , Humanos , Glicoproteínas de Membrana/genética , Glicoproteínas de Membrana/imunologia , Linfócitos T/metabolismo , Transcrição Gênica/genética
20.
J Clin Invest ; 111(8): 1191-9, 2003 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-12697738

RESUMO

Death receptor-mediated activation-induced apoptosis of antigen-specific T cells is a major mechanism of peripheral tolerance induction and immune homeostasis. Failure to undergo activation-induced cell death (AICD) is an important underlying cause of many autoimmune diseases. Thus, enhancing the T cell's own suicide mechanism may provide an efficient therapy for the treatment of autoimmune diseases. Bisindolylmaleimide VIII (Bis VIII), a PKC inhibitor, can sensitize T cells for death receptor-induced apoptosis and thus can inhibit the development of T cell-mediated autoimmune disease in vivo. In this study, we have analyzed the functional consequences of accelerated suicide for a protective CD8+ T cell-mediated immune response. Our data indicate that CD8+ T cells are sensitized by Bis VIII to AICD, both in vitro and in vivo. The sensitizing effect of Bis VIII appears to be mediated by specific downmodulation of the antiapoptotic molecule cellular FLICE-like inhibitory protein (cFLIP(L)). Importantly, Bis VIII administration during an acute lymphocytic choriomeningitis virus (LCMV) infection causes the depletion of virus-specific CD8+ T cells and subsequently impaired cytotoxicity and virus clearance. We conclude that resistance to death receptor-induced apoptosis is crucial for the efficient induction of a protective immune response, and that Bis VIII-based immunotherapies have to be applied under well-controlled conditions to avoid the induction of immune incompetence and the inability to respond to pathogen infection.


Assuntos
Linfócitos T CD8-Positivos/imunologia , Peptídeos e Proteínas de Sinalização Intracelular , Animais , Apoptose/efeitos dos fármacos , Proteína Reguladora de Apoptosis Semelhante a CASP8 e FADD , Proteínas de Transporte/análise , Citotoxicidade Imunológica , Tolerância Imunológica , Imunoterapia , Indóis/farmacologia , Ativação Linfocitária , Maleimidas/farmacologia , Camundongos , Camundongos Endogâmicos C57BL , Replicação Viral/efeitos dos fármacos
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