Characterizing patterns of seasonal drought stress for use in common bean breeding in East Africa under present and future climates.

Common bean (Phaseolus vulgaris L.) is the second most important source of dietary protein and the third most important source of calories in Africa, especially for the poor. In East Africa, drought is an important constraint to bean production. Therefore, breeding programs in East Africa have been trying to develop drought resistant varieties of common bean. To do this, breeders need information about seasonal drought stress patterns including their onset, intensity, and duration in the target area of the breeding program, so that they can mimic this pattern during field trials. Using the Decision Support for Agrotechnology Transfer (DSSAT) v4.7 model together with historical and future (Coupled Model Inter-comparison Project 6, CMIP6) climate data, this study categorized Ethiopia, Tanzania, and Uganda into different target population of environments (TPEs) based on historical and future seasonal drought stress patterns. We find that stress-free conditions generally dominate across the three countries under historical conditions (50-80% frequency). These conditions are projected to increase in frequency in Ethiopia by 2-10% but the converse is true for Tanzania (2-8% reduction) and Uganda (17-20% reduction) by 2050 depending on the Shared Socioeconomic Pathway (SSP). Accordingly, by 2050, terminal drought stresses of various intensities (moderate, severe, extreme) are prevalent in 34% of Uganda, around a quarter of Ethiopia, and 40% of the bean growing environments in Tanzania. The TPEs identified in each country serve as a basis for prioritizing breeding activities in national programs. However, to optimize resource use in international breeding programs to develop genotypes that are resilient to future projected stress patterns, we argue that common bean breeding programs should focus primarily on identifying genotypes with tolerance to severe terminal drought, with co-benefits in relation to adaptation to moderate and extreme terminal drought. Little to no emphasis on heat stress is warranted by 2050s.

Impacts of the COVID-19 pandemic on vegetable production systems and livelihoods: Smallholder farmer experiences in Burkina Faso.

At the onset of COVID-19, researchers quickly recognized the need for research on the consequences of the pandemic for agricultural and food systems, both in terms of immediate impacts on access to inputs and labor, disruptions in transportation and markets, and the longer-term implications on crop productivity, income, and livelihoods. Vegetable production and supply chains are particularly vulnerable due to the perishable nature of the products and labor-intensive production practices. The purpose of this study was to understand the impacts of COVID-19 on vegetable production in Burkina Faso in terms of both the biophysical aspects such as yields and access to inputs and socioeconomic aspects such as access to labor, markets, and social services. A survey was developed to better understand smallholder farmer experiences regarding the impacts of COVID-19 on their vegetable production systems and social well-being. The survey was administered (between August and October 2020) with smallholder farmers (n = 605) in 13 administrative regions covering all agroecological zones of Burkina Faso. The survey results clearly show impacts of COVID-19 on vegetable systems, including a reduction in access to inputs, a reduction in yields, a loss of income, reduced access to local and urban markets, reduced access to transportation, and an increase in post-harvest loss. Market access, distribution, and disruptions were a major shock to the system. Results also showed an increase in women's labor in the household, and for youth, an increase in unemployment, job loss, and concerns of poverty. Finally, food security and social supports were highlighted as major issues for resilience and livelihoods. The results from this survey should be helpful to policymakers and researchers to develop policies and strategies to minimize the negative impacts of this ongoing pandemic on the agri-food systems and support smallholder farmers to overcome stress caused by COVID-19.

Smallholder farmer perceptions about the impact of COVID-19 on agriculture and livelihoods in Senegal.

CONTEXT: The global COVID-19 pandemic has produced a variety of unanticipated shocks to farming and socio-economic systems around the world. In case of Senegal, the country was already facing number of challenges at the inception of the pandemic, including high rates of poverty, prevalence of food insecurity, combined with other biophysical and socioeconomic challenges faced generally in Sub-Saharan Africa. OBJECTIVE: To understand farmer perceptions of the potential impacts of COVID-19 on agricultural systems and social well-being of smallholder farmers in Senegal. Particular attention was given to potential vulnerabilities and resilience in the targeted farming systems. METHODS: A survey was developed to better understand smallholder farmer perceptions regarding the anticipated impacts of COVID-19 on their agriculture practices and social well-being. The survey was administered (between June 5 and June 20) with smallholder farmers (n = 872) in 14 regions covering all agroecological zones. Variables of interest included perceptions of potential impact on farming systems, agricultural productivity, communities, economics, markets, labor, gendered division of labor, food security, and community well-being. RESULTS AND CONCLUSIONS: Across the three farming systems examined (cropping, livestock, and horticulture) significant majorities expressed concerns related to access to inputs, ability to plant (cropping, horticulture), reduction of yields (cropping, horticulture), ability to feed livestock, ability to sell livestock, and the ability to hire labor (horticulture). The majority of respondents also expressed concern that COVID-19 would make it more difficult to get enough food on a regular basis for their household (82.5%); that the markets where they purchase food will either be closed or significantly disrupted (79.5%); that the price of food would increase (73.5%); and the market where they sell their produce/livestock will be either closed or significantly disrupted (73.2%). SIGNIFICANCE: Anticipated impacts of COVID-19 on agriculture will be felt on both the biophysical aspects such as production and access to inputs and socioeconomic aspects such as access to labor, markets, or rapid shifts in demand. Results support the need to use farming systems approach to gather perceived and actual impacts of COVID-19 and warrants a more in-depth examination of agronomic and biophysical issues as well as the impact on the livelihoods and social well-being of families at community and household levels. Further examination will help identify the characteristics that strengthen smallholder farming systems resilience to adjust to anticipated and unanticipated shocks, such as COVID-19, to decrease the negative impacts and increase the rate of recovery.

Snx10 and PIKfyve are required for lysosome formation in osteoclasts.

Bone resorption and organelle homeostasis in osteoclasts require specialized intracellular trafficking. Sorting nexin 10 (Snx10) is a member of the sorting nexin family of proteins that plays crucial roles in cargo sorting in the endosomal pathway by its binding to phosphoinositide(3)phosphate (PI3P) localized in early endosomes. We and others have shown previously that the gene encoding sorting Snx10 is required for osteoclast morphogenesis and function, as osteoclasts from humans and mice lacking functional Snx10 are dysfunctional. To better understand the role and mechanisms by which Snx10 regulates vesicular transport, the aim of the present work was to study PIKfyve, another PI3P-binding protein, which phosphorylates PI3P to PI(3,5)P2. PI(3,5)P2 is known to be required for endosome/lysosome maturation, and the inhibition of PIKfyve causes endosome enlargement. Overexpression of Snx10 also induces accumulation of early endosomes suggesting that both Snx10 and PIKfyve are required for normal endosome/lysosome transition. Apilimod is a small molecule with specific, nanomolar inhibitory activity on PIKfyve but only in the presence of key osteoclast factors CLCN7, OSTM1, and Snx10. This observation suggests that apilimod's inhibitory effects are mediated by endosome/lysosome disruption. Here we show that both Snx10 and PIKfyve colocalize to early endosomes in osteoclasts and coimmunoprecipitate in vesicle fractions. Treatment with 10 nM apilimod or genetic deletion of PIKfyve in cells resulted in the accumulation of early endosomes, and in the inhibition of osteoclast differentiation, lysosome formation, and secretion of TRAP from differentiated osteoclasts. Snx10 and PIKfyve also colocalized in gastric zymogenic cells, another cell type impacted by Snx10 mutations. Apilimod-specific inhibition of PIKfyve required Snx10 expression, as it did not inhibit lysosome biogenesis in Snx10-deficient osteoclasts. These findings suggest that Snx10 and PIKfyve are involved in the regulation of endosome/lysosome homeostasis via the synthesis of PI(3,5)P2 and may point to a new strategy to prevent bone loss.