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1.
RSC Adv ; 12(2): 947-970, 2021 Dec 22.
Artigo em Inglês | MEDLINE | ID: mdl-35425100

RESUMO

The use of plastics in a wide range of applications has grown substantially over recent decades, resulting in enormous growth in production volumes to meet demand. Though a wide range of biomass-derived chemicals and materials are available on the market, the production volumes of such renewable alternatives are currently not sufficient to replace their fossil-based analogues due to various factors, in particular cost-effectiveness. Hence, the majority of plastics are still industrially produced from fossil-based feedstocks. Moreover, various reports have clearly raised concern about the plastics that are not recycled at their end-of-life and instead end up in landfills or the oceans. To avoid further pollution of our planet, it is highly desirable to develop recycling processes that use plastic waste as feedstock. Chemical recycling processes could potentially offer a solution, since they afford monomers from which new polymers can be produced, with the same performance as virgin plastics. In this manuscript, the opportunities for using either chemical or biochemical (i.e., enzymatic) approaches in the depolymerization of polycondensation polymers for recycling purposes are reviewed. Our aim is to highlight the strategies that have been developed so far to break down plastic waste into monomers, providing the first step in the development of chemical recycling processes for plastic waste, and to create a renewed awareness of the need to valorize plastic waste by efficiently transforming it into virgin plastics.

2.
Molecules ; 25(8)2020 Apr 18.
Artigo em Inglês | MEDLINE | ID: mdl-32325737

RESUMO

Monoterpenes, such as the cyclic terpene limonene, are valuable and important natural products widely used in food, cosmetics, household chemicals, and pharmaceutical applications. The biotechnological production of limonene with microorganisms may complement traditional plant extraction methods. For this purpose, the bioprocess needs to be stable and ought to show high titers and space-time yields. In this study, a limonene production process was developed with metabolically engineered Escherichia coli at the bioreactor scale. Therefore, fed-batch fermentations in minimal medium and in the presence of a non-toxic organic phase were carried out with E. coli BL21 (DE3) pJBEI-6410 harboring the optimized genes for the mevalonate pathway and the limonene synthase from Mentha spicata on a single plasmid. The feasibility of glycerol as the sole carbon source for cell growth and limonene synthesis was examined, and it was applied in an optimized fermentation setup. Titers on a gram-scale of up to 7.3 g·Lorg-1 (corresponding to 3.6 g·L-1 in the aqueous production phase) were achieved with industrially viable space-time yields of 0.15 g·L-1·h-1. These are the highest monoterpene concentrations obtained with a microorganism to date, and these findings provide the basis for the development of an economic and industrially relevant bioprocess.


Assuntos
Escherichia coli/metabolismo , Limoneno/metabolismo , Engenharia Metabólica , Escherichia coli/genética , Fermentação , Glicerol/metabolismo , Engenharia Metabólica/métodos , Redes e Vias Metabólicas , Ácido Mevalônico/metabolismo , Monoterpenos/metabolismo
3.
Trends Biotechnol ; 38(2): 191-201, 2020 02.
Artigo em Inglês | MEDLINE | ID: mdl-31431299

RESUMO

Controlling the expression of genes is one of the key challenges of synthetic biology. Until recently fine-tuned control has been out of reach, particularly in eukaryotes owing to their complexity of gene regulation. With advances in machine learning (ML) and in particular with increasing dataset sizes, models predicting gene expression levels from regulatory sequences can now be successfully constructed. Such models form the cornerstone of algorithms that allow users to design regulatory regions to achieve a specific gene expression level. In this review we discuss strategies for data collection, data encoding, ML practices, design algorithm choices, and finally model interpretation. Ultimately, these developments will provide synthetic biologists with highly specific genetic building blocks to rationally engineer complex pathways and circuits.


Assuntos
Eucariotos/genética , Regulação da Expressão Gênica , Engenharia Genética/métodos , Aprendizado de Máquina , Modelos Genéticos , Algoritmos , Células Eucarióticas/fisiologia , Citometria de Fluxo/métodos , Variação Genética , Biologia Sintética/métodos
4.
Biotechnol Bioeng ; 114(7): 1511-1520, 2017 07.
Artigo em Inglês | MEDLINE | ID: mdl-28266022

RESUMO

Amino acid hydroxylases depend directly on the cellular TCA cycle via their cosubstrate α-ketoglutarate (α-KG) and are highly useful for the selective biocatalytic oxyfunctionalization of amino acids. This study evaluates TCA cycle engineering strategies to force and increase α-KG flux through proline-4-hydroxylase (P4H). The genes sucA (α-KG dehydrogenase E1 subunit) and sucC (succinyl-CoA synthetase ß subunit) were alternately deleted together with aceA (isocitrate lyase) in proline degradation-deficient Escherichia coli strains (ΔputA) expressing the p4h gene. Whereas, the ΔsucCΔaceAΔputA strain grew in minimal medium in the absence of P4H, relying on the activity of fumarate reductase, growth of the ΔsucAΔaceAΔputA strictly depended on P4H activity, thus coupling growth to proline hydroxylation. P4H restored growth, even when proline was not externally added. However, the reduced succinyl-CoA pool caused a 27% decrease of the average cell size compared to the wildtype strain. Medium supplementation partially restored the morphology and, in some cases, enhanced proline hydroxylation activity. The specific proline hydroxylation rate doubled when putP, encoding the Na+ /l-proline transporter, was overexpressed in the ΔsucAΔaceAΔputA strain. This is in contrast to wildtype and ΔputA single-knock out strains, in which α-KG availability obviously limited proline hydroxylation. Such α-KG limitation was relieved in the ΔsucAΔaceAΔputA strain. Furthermore, the ΔsucAΔaceAΔputA strain was used to demonstrate an agar plate-based method for the identification and selection of active α-KG dependent hydroxylases. This together with the possibility to waive selection pressure and overcome α-KG limitation in respective hydroxylation processes based on living cells emphasizes the potential of TCA cycle engineering for the productive application of α-KG dependent hydroxylases. Biotechnol. Bioeng. 2017;114: 1511-1520. © 2017 Wiley Periodicals, Inc.


Assuntos
Ciclo do Ácido Cítrico/genética , Escherichia coli/fisiologia , Melhoramento Genético/métodos , Hidroxiprolina/biossíntese , Ácidos Cetoglutáricos/metabolismo , Oxigenases de Função Mista/metabolismo , Catálise , Regulação Bacteriana da Expressão Gênica/fisiologia , Regulação Enzimológica da Expressão Gênica/fisiologia , Hidroxiprolina/genética , Oxigenases de Função Mista/genética , Engenharia de Proteínas/métodos
5.
Biotechnol Bioeng ; 114(2): 281-290, 2017 02.
Artigo em Inglês | MEDLINE | ID: mdl-27530691

RESUMO

The efficiency of biocatalytic reactions involving industrially interesting reactants is often constrained by toxification of the applied biocatalyst. Here, we evaluated the combination of biologically and technologically inspired strategies to overcome toxicity-related issues during the multistep oxyfunctionalization of (R)-(+)-limonene to (R)-(+)-perillic acid. Pseudomonas putida GS1 catalyzing selective limonene oxidation via the p-cymene degradation pathway and recombinant Pseudomonas taiwanensis VLB120 were evaluated for continuous perillic acid production. A tubular segmented-flow biofilm reactor was used in order to relieve oxygen limitations and to enable membrane mediated substrate supply as well as efficient in situ product removal. Both P. putida GS1 and P. taiwanensis VLB120 developed a catalytic biofilm in this system. The productivity of wild-type P. putida GS1 encoding the enzymes for limonene bioconversion was highly dependent on the carbon source and reached 34 g Ltube-1 day-1 when glycerol was supplied. More than 10-fold lower productivities were reached irrespective of the applied carbon source when the recombinant P. taiwanensis VLB120 harboring p-cymene monooxygenase and p-cumic alcohol dehydrogenase was used as biocatalyst. The technical applicability for preparative perillic acid synthesis in the applied system was verified by purification of perillic acid from the outlet stream using an anion exchanger resin. This concept enabled the multistep production of perillic acid and which might be transferred to other reactions involving volatile reactants and toxic end-products. Biotechnol. Bioeng. 2017;114: 281-290. © 2016 Wiley Periodicals, Inc.


Assuntos
Biofilmes , Cicloexenos/metabolismo , Monoterpenos/metabolismo , Terpenos/metabolismo , Reatores Biológicos/microbiologia , Clonagem Molecular , Cicloexenos/análise , Cicloexenos/isolamento & purificação , Limoneno , Monoterpenos/análise , Monoterpenos/isolamento & purificação , Pseudomonas/genética , Pseudomonas/metabolismo , Pseudomonas putida/enzimologia , Pseudomonas putida/genética , Terpenos/análise
6.
Biotechnol Bioeng ; 114(4): 874-884, 2017 04.
Artigo em Inglês | MEDLINE | ID: mdl-27883174

RESUMO

It is a common misconception in whole-cell biocatalysis to refer to an enzyme as the biocatalyst, thereby neglecting the structural and metabolic framework provided by the cell. Here, the low whole-cell biocatalyst stability, that is, the stability of specific biocatalyst activity, in a process for the terminal oxyfunctionalization of renewable fatty acid methyl esters was investigated. This reaction, which is difficult to achieve by chemical means, is catalyzed by Escherichia coli featuring the monooxygenase system AlkBGT and the uptake facilitator AlkL from Pseudomonas putida GPo1. Corresponding products, that is, terminal alcohols, aldehydes, and acids, constitute versatile bifunctional building blocks, which are of special interest for polymer synthesis. It could clearly be shown that extensive dodecanoic acid methyl ester uptake mediated by high AlkL levels leads to whole-cell biocatalyst toxification. Thus, cell viability constitutes the primary factor limiting biocatalyst stability and, as a result, process durability. Hence, a compromise had to be found between low biocatalyst activity due to restricted substrate uptake and poor biocatalyst stability due to AlkL-mediated toxification. This was achieved by the fine-tuning of heterologous alkL expression, which, furthermore, enabled the identification of the alkBGT expression level as another critical factor determining biocatalyst stability. Controlled synthesis of AlkL and reduced alkBGT expression finally enabled an increase of product titers by a factor of 4.3 up to 229 g Lorg-1 in a two-liquid phase bioprocess setup. Clearly, ω-oxyfunctionalization process performance was determined by cell viability and thus biocatalyst stability rather than the maximally achievable specific biocatalyst activity. Biotechnol. Bioeng. 2017;114: 874-884. © 2016 Wiley Periodicals, Inc.


Assuntos
Sobrevivência Celular/fisiologia , Ácidos Láuricos/metabolismo , Engenharia Metabólica/métodos , Oxigenases de Função Mista/metabolismo , Proteínas da Membrana Bacteriana Externa/metabolismo , Biotransformação , Escherichia coli/genética , Escherichia coli/metabolismo , Microbiologia Industrial
7.
J Biotechnol ; 233: 42-8, 2016 Sep 10.
Artigo em Inglês | MEDLINE | ID: mdl-27369551

RESUMO

Δ(9)-Tetrahydrocannabinolic acid synthase (THCAS) from the secondary metabolism of Cannabis sativa L. catalyzes the oxidative formation of an intramolecular CC bond in cannabigerolic acid (CBGA) to synthesize Δ(9)-tetrahydrocannabinolic acid (THCA), which is the direct precursor of Δ(9)-tetrahydrocannabinol (Δ(9)-THC). Aiming on a biotechnological production of cannabinoids, we investigated the potential of the heterologously produced plant oxidase in a cell-free system on preparative scale. THCAS was characterized in an aqueous/organic two-liquid phase setup in order to solubilize the hydrophobic substrate and to allow in situ product removal. Compared to the single phase aqueous setup the specific activity decreased by a factor of approximately 2 pointing to a substrate limitation of CBGA in the two-liquid phase system. However, the specific activity remained stable for at least 3h illustrating the benefit of the two-liquid phase setup. In a repeated-batch setup, THCAS showed only a minor loss of specific activity in the third batch pointing to a high intrinsic stability and high solvent tolerance of the enzyme. Maximal space-time-yields of 0.121gL(-1)h(-1) were reached proving the two-liquid phase concept suitable for biotechnological production of cannabinoids.


Assuntos
Cannabis/enzimologia , Dronabinol/análogos & derivados , Oxirredutases Intramoleculares/metabolismo , Proteínas de Plantas/metabolismo , Proteínas Recombinantes/metabolismo , Cannabis/genética , Dronabinol/química , Dronabinol/metabolismo , Oxirredutases Intramoleculares/genética , Pichia/genética , Proteínas de Plantas/genética , Proteínas Recombinantes/genética
8.
Metab Eng ; 36: 1-9, 2016 07.
Artigo em Inglês | MEDLINE | ID: mdl-26969251

RESUMO

The expansion of microbial substrate and product scopes will be an important brick promoting future bioeconomy. In this study, an orthogonal pathway running in parallel to native metabolism and converting renewable dodecanoic acid methyl ester (DAME) via terminal alcohol and aldehyde to 12-aminododecanoic acid methyl ester (ADAME), a building block for the high-performance polymer Nylon 12, was engineered in Escherichia coli and optimized regarding substrate uptake, substrate requirements, host strain choice, flux, and product yield. Efficient DAME uptake was achieved by means of the hydrophobic outer membrane porin AlkL increasing maximum oxygenation and transamination activities 8.3 and 7.6-fold, respectively. An optimized coupling to the pyruvate node via a heterologous alanine dehydrogenase enabled efficient intracellular L-alanine supply, a prerequisite for self-sufficient whole-cell transaminase catalysis. Finally, the introduction of a respiratory chain-linked alcohol dehydrogenase enabled an increase in pathway flux, the minimization of undesired overoxidation to the respective carboxylic acid, and thus the efficient formation of ADAME as main product. The completely synthetic orthogonal pathway presented in this study sets the stage for Nylon 12 production from renewables. Its effective operation achieved via fine tuning the connectivity to native cell functionalities emphasizes the potential of this concept to expand microbial substrate and product scopes.


Assuntos
Conservação dos Recursos Naturais/métodos , Escherichia coli/fisiologia , Melhoramento Genético/métodos , Ácidos Láuricos/metabolismo , Engenharia Metabólica/métodos , Nylons/metabolismo , Alanina/genética , Alanina/metabolismo , Vias Biossintéticas/fisiologia , Redes e Vias Metabólicas/fisiologia , Nylons/isolamento & purificação , Ácido Pirúvico/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
9.
Biotechnol Bioeng ; 113(6): 1305-14, 2016 06.
Artigo em Inglês | MEDLINE | ID: mdl-26574166

RESUMO

The microbial production of isoprenoids has recently developed into a prime example for successful bottom-up synthetic biology or top-down systems biology strategies. Respective fermentation processes typically rely on growing recombinant microorganisms. However, the fermentative production of isoprenoids has to compete with cellular maintenance and growth for carbon and energy. Non-growing but metabolically active E. coli cells were evaluated in this study as alternative biocatalyst configurations to reduce energy and carbon loss towards biomass formation. The use of non-growing cells in an optimized fermentation medium resulted in more than fivefold increased specific limonene yields on cell dry weight and glucose, as compared to the traditional growing-cell-approach. Initially, the stability of the resting-cell activity was limited. This instability was overcome via the optimization of the minimal fermentation medium enabling high and stable limonene production rates for up to 8 h and a high specific yield of ≥50 mg limonene per gram cell dry weight. Omitting MgSO4 from the fermentation medium was very promising to prohibit growth and allow high productivities. Applying a MgSO4 -limitation also improved limonene formation by growing cells during non-exponential growth involving a reduced biomass yield on glucose and a fourfold increase in specific limonene yields on biomass as compared to non-limited cultures. The control of microbial growth via the medium composition was identified as a key but yet underrated strategy for efficient isoprenoid production. Biotechnol. Bioeng. 2016;113: 1305-1314. © 2015 Wiley Periodicals, Inc.


Assuntos
Proliferação de Células/fisiologia , Cicloexenos/metabolismo , Escherichia coli/fisiologia , Sulfato de Magnésio/metabolismo , Proteínas Recombinantes/biossíntese , Terpenos/metabolismo , Cicloexenos/isolamento & purificação , Escherichia coli/citologia , Limoneno , Proteínas Recombinantes/genética , Terpenos/isolamento & purificação , Regulação para Cima/fisiologia
10.
Data Brief ; 4: 641-9, 2015 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-26401520

RESUMO

This data article refers to the report Δ(9)-Tetrahydrocannabinolic acid synthase (THCAS) production in Pichia pastoris enables chemical synthesis of cannabinoids (Lange et. al. 2015) [2]. THCAS was produced on a 2 L lab scale using recombinant P. pastoris KM71 KE1. Enrichment of THCAS as a technically pure enzyme was realized using dialysis and cationic exchange chromatography. nLC-ESI-MS/MS analysis identified THCAS in different fractions obtained by cationic exchange chromatography.

11.
J Biotechnol ; 211: 68-76, 2015 Oct 10.
Artigo em Inglês | MEDLINE | ID: mdl-26197418

RESUMO

Δ(9)-Tetrahydrocannabinol (THC) is of increasing interest as a pharmaceutical and bioactive compound. Chemical synthesis of THC uses a laborious procedure and does not satisfy the market demand. The implementation of biocatalysts for specific synthesis steps might be beneficial for making natural product availability independent from the plant. Δ(9)-Tetrahydrocannabinolic acid synthase (THCAS) from C. sativa L. catalyzes the cyclization of cannabigerolic acid (CBGA) to Δ(9)-tetrahydrocannabinolic acid (THCA), which is non-enzymatically decarboxylated to THC. We report the preparation of THCAS in amounts sufficient for the biocatalytic production of THC(A). Active THCAS was most efficiently obtained from Pichia pastoris. THCAS was produced on a 2L bioreactor scale and the enzyme was isolated by single-step chromatography with a specific activity of 73Ug(-1)total protein. An organic/aqueous two-liquid phase setup for continuous substrate delivery facilitated in situ product removal. In addition, THCAS activity in aqueous environments lasted for only 20min whereas the presence of hexane stabilized the activity over 3h. In conclusion, production of THCAS in P. pastoris Mut(S) KM71 KE1, subsequent isolation, and its application in a two-liquid phase setup enables the synthesis of THCA on a mg scale.


Assuntos
Canabinoides/síntese química , Dronabinol/análogos & derivados , Oxirredutases Intramoleculares/metabolismo , Pichia/metabolismo , Técnicas de Cultura Celular por Lotes , Benzoatos/metabolismo , Biocatálise , Biomassa , Reatores Biológicos/microbiologia , Dronabinol/metabolismo , Eletroforese em Gel de Poliacrilamida , Fermentação , Oxirredutases Intramoleculares/isolamento & purificação , Especificidade por Substrato
12.
Curr Opin Biotechnol ; 35: 52-62, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25835779

RESUMO

The recent progress in sustainable chemistry and in synthetic biology increased the interest of chemical and pharmaceutical industries to implement microbial processes for chemical synthesis. However, most organisms used in biotechnological applications are not evolved by Nature for the production of hydrophobic, non-charged, volatile, or toxic compounds. In order to overcome this discrepancy, bioprocess design should consist of an integrated approach addressing pathway, cellular, reaction, and process engineering. Highlighting selected examples, we show that surprisingly often Nature provides conceptual solutions to enable chemical synthesis. Complemented by established methods from (bio)chemical and metabolic engineering, these concepts offer potential strategies yet to be explored and translated into innovative technical solutions enabling sustainable microbial production of non-natural chemicals.


Assuntos
Fenômenos Químicos , Animais , Biocatálise , Reatores Biológicos , Engenharia Metabólica
13.
Biotechnol Bioeng ; 112(9): 1738-50, 2015 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-25786991

RESUMO

Metabolic engineering strategies mark a milestone for the fermentative production of bulk and fine chemicals. Yet, toxic products and volatile reaction intermediates with low solubilities remain challenging. Prominent examples are artificial multistep pathways like the production of perillyl acetate (POHAc) from glucose via limonene. For POHAc, these limitations can be overcome by mixed-culture fermentations. A limonene biosynthesis pathway and cytochrome P450 153A6 (CYP153A6) as regioselective hydroxylase are used in two distinct recombinant E. coli. POHAc formation from glucose in one recombinant cell was hindered by ineffective coupling of limonene synthesis and low rates of oxyfunctionalization. The optimization of P450 gene expression led to the formation of 6.20 ± 0.06 mg gcdw (-1) POHAc in a biphasic batch cultivation with glucose as sole carbon and energy source. Increasing the spatial proximity between limonene synthase and CYP153A6 by a genetic fusion of both enzymes changed the molar limonene/POHAc ratio from 3.2 to 1.6. Spatial separation of limonene biosynthesis from its oxyfunctionalization improved POHAc concentration 3.3-fold to 21.7 mg L(-1) as compared to a biphasic fermentation. Mixed-cultures of E. coli BL21 (DE3) containing the limonene biosynthesis pathway and E. coli MG1655 harboring either CYP153A6, or alternatively a cymene monooxygenase, showed POHAc formation rates of 0.06 or 0.11 U gcdw (-1) , respectively. This concept provides a novel framework for fermentative syntheses involving toxic, volatile, or barely soluble compounds or pathway intermediates.


Assuntos
Cicloexenos/metabolismo , Escherichia coli/metabolismo , Engenharia Metabólica/métodos , Terpenos/metabolismo , Sistema Enzimático do Citocromo P-450/metabolismo , Escherichia coli/genética , Fermentação , Limoneno , Redes e Vias Metabólicas
14.
Biotechnol Bioeng ; 111(9): 1820-30, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-24852702

RESUMO

The oxyfunctionalization of unactivated C−H bonds can selectively and efficiently be catalyzed by oxygenase-containing whole-cell biocatalysts. Recombinant Escherichia coli W3110 containing the alkane monooxygenase AlkBGT and the outer membrane protein AlkL from Pseudomonas putida GPo1 have been shown to efficiently catalyze the terminal oxyfunctionalization of renewable fatty acid methyl esters yielding bifunctional products of interest for polymer synthesis. In this study, AlkBGTL-containing E. coli W3110 is shown to catalyze the multistep conversion of dodecanoic acid methyl ester (DAME) via terminal alcohol and aldehyde to the acid, exhibiting Michaelis-Menten-type kinetics for each reaction step. In two-liquid phase biotransformations, the product formation pattern was found to be controlled by DAME availability. Supplying DAME as bulk organic phase led to accumulation of the terminal alcohol as the predominant product. Limiting DAME availability via application of bis(2-ethylhexyl)phthalate (BEHP) as organic carrier solvent enabled almost exclusive acid accumulation. Furthermore, utilization of BEHP enhanced catalyst stability by reducing toxic effects of substrate and products. A further shift towards the overoxidized products was achieved by co-expression of the gene encoding the alcohol dehydrogenase AlkJ, which was shown to catalyze efficient and irreversible alcohol to aldehyde oxidation in vivo. With DAME as organic phase, the aldehyde accumulated as main product using resting cells containing AlkBGT, AlkL, as well as AlkJ. This study highlights the versatility of whole-cell biocatalysis for synthesis of industrially relevant bifunctional building blocks and demonstrates how integrated reaction and catalyst engineering can be implemented to control product formation patterns in biocatalytic multistep reactions.


Assuntos
Álcoois/metabolismo , Aldeídos/metabolismo , Citocromo P-450 CYP4A/metabolismo , Escherichia coli/metabolismo , Ácidos Láuricos/metabolismo , Engenharia Metabólica , Álcoois/toxicidade , Aldeídos/toxicidade , Biotecnologia/métodos , Citocromo P-450 CYP4A/genética , Escherichia coli/enzimologia , Escherichia coli/genética , Ácidos Láuricos/toxicidade , Oxirredução , Pseudomonas putida/enzimologia , Pseudomonas putida/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
15.
Biotechnol J ; 9(8): 1000-12, 2014 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-24756896

RESUMO

The efficiency and productivity of cellular biocatalysts play a key role in the industrial synthesis of fine and bulk chemicals. This study focuses on optimizing the synthesis of (S)-limonene from glycerol and glucose as carbon sources using recombinant Escherichia coli. The cyclic monoterpene limonene is extensively used in the fragrance, food, and cosmetic industries. Recently, limonene also gained interest as alternative jet fuel of biological origin. Key parameters that limit the (S)-limonene yield, related to genetics, physiology, and reaction engineering, were identified. The growth-dependent production of (S)-limonene was shown for the first time in minimal media. E. coli BL21 (DE3) was chosen as the preferred host strain, as it showed low acetate formation, fast growth, and high productivity. A two-liquid phase fed-batch fermentation with glucose as the sole carbon and energy source resulted in the formation of 700 mg L(org) (-1) (S)-limonene. Specific activities of 75 mU g(cdw) (-1) were reached, but decreased relatively quickly. The use of glycerol as a carbon source resulted in a prolonged growth and production phase (specific activities of ≥50 mU g(cdw) (-1) ) leading to a final (S)-limonene concentration of 2,700 mg L(org) (-1) . Although geranyl diphosphate (GPP) synthase had a low solubility, its availability appeared not to limit (S)-limonene formation in vivo under the conditions investigated. GPP rerouting towards endogenous farnesyl diphosphate (FPP) formation also did not limit (S)-limonene production. The two-liquid phase fed-batch setup led to the highest monoterpene concentration obtained with a recombinant microbial biocatalyst to date.


Assuntos
Cicloexenos/metabolismo , Escherichia coli/crescimento & desenvolvimento , Glicerol/metabolismo , Microbiologia Industrial , Terpenos/metabolismo , Meios de Cultura/química , Escherichia coli/genética , Fermentação , Microbiologia Industrial/métodos , Limoneno , Engenharia Metabólica/métodos
16.
Chem Soc Rev ; 42(15): 6346-77, 2013 Aug 07.
Artigo em Inglês | MEDLINE | ID: mdl-23475180

RESUMO

During the last decades, biocatalysis became of increasing importance for chemical and pharmaceutical industries. Regarding regio- and stereospecificity, enzymes have shown to be superior compared to traditional chemical synthesis approaches, especially in C-O functional group chemistry. Catalysts established on a process level are diverse and can be classified along a functional continuum starting with single-step biotransformations using isolated enzymes or microbial strains towards fermentative processes with recombinant microorganisms containing artificial synthetic pathways. The complex organization of respective enzymes combined with aspects such as cofactor dependency and low stability in isolated form often favors the use of whole cells over that of isolated enzymes. Based on an inventory of the large spectrum of biocatalytic C-O functional group chemistry, this review focuses on highlighting the potentials, limitations, and solutions offered by the application of self-regenerating microbial cells as biocatalysts. Different cellular functionalities are discussed in the light of their (possible) contribution to catalyst efficiency. The combined achievements in the areas of protein, genetic, metabolic, and reaction engineering enable the development of whole-cell biocatalysts as powerful tools in organic synthesis.


Assuntos
Enzimas/metabolismo , Álcoois/química , Álcoois/metabolismo , Biocatálise , Reatores Biológicos , Enzimas/química , Estrutura Molecular
17.
Biotechnol Bioeng ; 110(5): 1282-92, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23239244

RESUMO

Living microbial cells are considered to be the catalyst of choice for selective terpene functionalization. However, such processes often suffer from side product formation and poor substrate mass transfer into cells. For the hydroxylation of (S)-limonene to (S)-perillyl alcohol by Pseudomonas putida KT2440 (pGEc47ΔB)(pCom8-PFR1500), containing the cytochrome P450 monooxygenase CYP153A6, the side products perillyl aldehyde and perillic acid constituted up to 26% of the total amount of oxidized terpenes. In this study, it is shown that the reaction rate is substrate-limited in the two-liquid phase system used and that host intrinsic dehydrogenases and not CYP153A6 are responsible for the formation of the undesired side products. In contrast to P. putida KT2440, E. coli W3110 was found to catalyze perillyl aldehyde reduction to the alcohol and no oxidation to the acid. Furthermore, E. coli W3110 harboring CYP153A6 showed high limonene hydroxylation activities (7.1 U g CDW-1). The outer membrane protein AlkL was found to enhance hydroxylation activities of E. coli twofold in aqueous single-phase and fivefold in two-liquid phase biotransformations. In the latter system, E. coli harboring CYP153A6 and AlkL produced up to 39.2 mmol (S)-perillyl alcohol L tot-1 within 26 h, whereas no perillic acid and minor amounts of perillyl aldehyde (8% of the total products) were formed. In conclusion, undesired perillyl alcohol oxidation was reduced by choosing E. coli's enzymatic background as a reaction environment and co-expression of the alkL gene in E. coli represents a promising strategy to enhance terpene bioconversion rates.


Assuntos
Proteínas da Membrana Bacteriana Externa/metabolismo , Reatores Biológicos/microbiologia , Cicloexenos/metabolismo , Sistema Enzimático do Citocromo P-450/metabolismo , Monoterpenos/metabolismo , Terpenos/metabolismo , Cicloexenos/química , Escherichia coli/enzimologia , Escherichia coli/metabolismo , Hidroxilação , Isoenzimas/metabolismo , Limoneno , Monoterpenos/química , Pseudomonas putida/enzimologia , Pseudomonas putida/metabolismo , Terpenos/química
18.
Appl Environ Microbiol ; 78(16): 5724-33, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22685130

RESUMO

The outer membrane of microbial cells forms an effective barrier for hydrophobic compounds, potentially causing an uptake limitation for hydrophobic substrates. Low bioconversion activities (1.9 U g(cdw)(-1)) have been observed for the ω-oxyfunctionalization of dodecanoic acid methyl ester by recombinant Escherichia coli containing the alkane monooxygenase AlkBGT of Pseudomonas putida GPo1. Using fatty acid methyl ester oxygenation as the model reaction, this study investigated strategies to improve bacterial uptake of hydrophobic substrates. Admixture of surfactants and cosolvents to improve substrate solubilization did not result in increased oxygenation rates. Addition of EDTA increased the initial dodecanoic acid methyl ester oxygenation activity 2.8-fold. The use of recombinant Pseudomonas fluorescens CHA0 instead of E. coli resulted in a similar activity increase. However, substrate mass transfer into cells was still found to be limiting. Remarkably, the coexpression of the alkL gene of P. putida GPo1 encoding an outer membrane protein with so-far-unknown function increased the dodecanoic acid methyl ester oxygenation activity of recombinant E. coli 28-fold. In a two-liquid-phase bioreactor setup, a 62-fold increase to a maximal activity of 87 U g(cdw)(-1) was achieved, enabling the accumulation of high titers of terminally oxyfunctionalized products. Coexpression of alkL also increased oxygenation activities toward the natural AlkBGT substrates octane and nonane, showing for the first time clear evidence for a prominent role of AlkL in alkane degradation. This study demonstrates that AlkL is an efficient tool to boost productivities of whole-cell biotransformations involving hydrophobic aliphatic substrates and thus has potential for broad applicability.


Assuntos
Proteínas da Membrana Bacteriana Externa/metabolismo , Escherichia coli/metabolismo , Ácidos Graxos/metabolismo , Engenharia Metabólica/métodos , Proteínas da Membrana Bacteriana Externa/genética , Transporte Biológico , Reatores Biológicos , Escherichia coli/genética , Ácidos Graxos/química , Interações Hidrofóbicas e Hidrofílicas , Oxirredução , Pseudomonas fluorescens/genética , Pseudomonas fluorescens/metabolismo , Pseudomonas putida/genética , Pseudomonas putida/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
19.
Biotechnol Bioeng ; 109(5): 1109-19, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22170310

RESUMO

Metabolically active resting (i.e., nongrowing) bacterial cells have a high potential in cofactor-dependent redox biotransformations. Where growing cells require carbon and energy for biomass production, resting cells can potentially exploit their metabolism more efficiently for redox biocatalysis allowing higher specific activities and product yields on energy source. Here, the potential of resting recombinant E. coli containing the styrene monooxygenase StyAB was investigated for enantioselective styrene epoxidation in a two-liquid phase setup. Resting cells indeed showed twofold higher specific activities as compared to growing cells in a similar setup. However, product formation rates decreased steadily resulting in lower final product concentrations. The low intrinsic stability of the reductase component StyB was found to limit overall biocatalyst stability. Such limitation by enzyme stability was overcome by increasing intracellular StyB levels. Beyond that, product inhibition was identified as a limiting factor, whereas complete toxification of the bacterial cells, as it was observed with growing cells, and deactivation of the multicomponent enzyme system did not occur. The resting cell setup allowed high product yields on glucose of more than 5 mol mol(glucose)(-1), which makes the use of resting cells a promising approach for ecologically as well as economically sustainable oxygenase-based whole-cell biocatalysis.


Assuntos
Metabolismo Energético , Escherichia coli/metabolismo , Estireno/metabolismo , Biotransformação , Escherichia coli/enzimologia , Escherichia coli/crescimento & desenvolvimento , Oxirredução , Oxigenases/metabolismo
20.
J Ind Microbiol Biotechnol ; 39(2): 275-87, 2012 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-21863302

RESUMO

Mammalian cytochrome P450 enzymes are of special interest as biocatalysts for fine chemical and drug metabolite synthesis. In this study, the potential of different recombinant microorganisms expressing rat and human cyp1a1 genes is evaluated for such applications. The maximum specific activity for 7-ethoxyresorufin O-deethylation and gene expression levels were used as parameters to judge biocatalyst performance. Under comparable conditions, E. coli is shown to be superior over the use of S. cerevisiae and P. putida as hosts for biocatalysis. Of all tested E. coli strains, E. coli DH5α and E. coli JM101 harboring rat CYP1A1 showed the highest activities (0.43 and 0.42 U g⁻¹(CDW), respectively). Detection of active CYP1A1 in cell-free E. coli extracts was found to be difficult and only for E. coli DH5α, expression levels could be determined (41 nmol g⁻¹(CDW)). The presented results show that efficient expression of mammalian cyp1a1 genes in recombinant microorganisms is troublesome and host-dependent and that enhancing expression levels is crucial in order to obtain more efficient biocatalysts. Specific activities currently obtained are not sufficient yet for fine chemical production, but are sufficient for preparative-scale drug metabolite synthesis.


Assuntos
Citocromo P-450 CYP1A1/metabolismo , Animais , Biotecnologia , Citocromo P-450 CYP1A1/genética , Sistema Enzimático do Citocromo P-450/genética , Sistema Enzimático do Citocromo P-450/metabolismo , Enzimas , Escherichia coli/genética , Escherichia coli/metabolismo , Humanos , Pseudomonas putida/metabolismo , Ratos , Saccharomyces/metabolismo
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