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J Comput Biol ; 26(5): 432-441, 2019 05.
Artigo em Inglês | MEDLINE | ID: mdl-30793922

RESUMO

Biclustering is a process of finding groups of genes that behave similarly under a subset of conditions. In this article, we propose an efficient biclustering algorithm, namely RN+, to identify biologically meaningful biclusters in gene expression data. The RN+ algorithm finds biologically meaningful biclusters through a novel gene filtering using protein-protein interaction network, gene searching, gene grouping, and queuing process. It also efficiently removes duplicate biclusters. We tested the proposed RN+ on five real microarray datasets, and compared its performance with seven competitive biclustering algorithms. The experimental results show that RN+ efficiently finds functionally enriched and biologically meaningful biclusters for large gene expression datasets, and outperforms the other tested biclustering algorithms on real datasets.


Assuntos
Expressão Gênica/genética , Mapas de Interação de Proteínas/genética , Algoritmos , Animais , Análise por Conglomerados , Bases de Dados Genéticas , Perfilação da Expressão Gênica , Humanos , Análise de Sequência com Séries de Oligonucleotídeos/métodos
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