Zeolite-based organized molecular assemblies. photophysical characterization and documentation of donor oxidation upon photosensitized charge separation.

An organized molecular assembly composed of two ruthenium polypyridine complexes, Ru(bpy)(2)(bpz)(2+) and Ru(bpy)(2)(H(2)O)(2)(2+) (where bpy = 2, 2'-bipyridine and bpz = 2, 2'-bipyrazine), has been prepared in adjacent supercages of Y-zeolite. This material has been characterized by diffuse reflectance, electronic absorption, electronic emission, and resonance Raman (RR) spectroscopy, as well as lifetime measurements. The spectral results confirm the identity of the entrapped complexes and resonance Raman measurements show that the relative concentrations of the two complexes within the zeolite particles are identical. A dramatic decrease in emission intensity observed for the adjacent cage assembly, relative to that observed for an appropriate reference material composed of a mixture of zeolite particles containing the separated complexes, indicates strong interaction between the adjacent complexes which provides an additional nonradiative decay pathway. The excited state lifetime measurements implicate a very short-lived component, dominating the decay curve at early times, which is most reasonably attributed to excited-state electron-transfer quenching of the adjacent cage pair. More importantly, analysis of diffuse reflectance spectra acquired during selective (sensitizer) irradiation of a sample of this material, wherein the remaining cages are filled with a suitable acceptor (MV(2+)), provides direct evidence for oxidation of the Ru(bpy)(2)(H(2)O)(2)(2+) donor complex, confirming the targeted synergy of the adjacent cage assembly.

Hydrogen-bonding interactions in the active sites of cytochrome P450cam and its site-directed mutants.

Resonance Raman spectroscopy is applied to the cyanide adducts of cytochrome P450cam and its T252A and D251N site-directed mutants, both in their substrate-free and camphor-bound forms, to probe active-site heme structure and, in particular, interactions of the FeCN fragment with potential active-site H-bond donors. In contrast to the ferrous CO and ferric NO adducts, which form only essentially linear (slightly distorted) FeXY fragments, the spectra of the ferric CN(-) adducts provide clear evidence the for the existence of an additional, rather highly bent, conformer; that is, the cyanide complexes form both linear and bent conformers in both the substrate-free and substrate-bound forms. Formation of this bent conformer is most reasonably attributed to the presence of off-axis H-bond donors, which induce distortion on the FeCN fragment but not the FeCO and FeNO fragments, which are poorer H-bond acceptors. For all three proteins, the substrate-free form exhibits a complex spectral pattern which arises because one of the modes associated with the FeCN fragment is coupled with two heme macrocycle deformation modes. Significantly, no evidence for such coupling is observed in the spectra of the camphor-bound forms. While various unknown factors may possibly give rise to selective activation of such coupling in the substrate-free derivative, given the known facts about the active-site architecture of this enzyme, a plausible explanation is that the bent conformer is oriented toward the water-filled substrate-binding site in the substrate-free form, but oppositely, toward the proposed proton delivery shuttle, in the substrate-bound form. Sensitivity of the FeCN modes to H(2)O/D(2)O exchange in the two camphor-bound mutants, which is apparently absent for the camphor-bound native protein, is most reasonably attributed to the known presence of extra water in the active sites of these mutants.

Zeolite-entrapped organized molecular assemblies. New evidence for highly efficient adjacent cage dyad formation and constrained rotational mobility of tris-ligated polypyridine complexes.

The primary objectives of the present work are to investigate the extent to which an entrapped, tris-ligated polypyridine complex of divalent ruthenium is restricted from rotating within the supercage of Y-zeolite and to provide additional evidence for the high efficiency of synthetic procedures developed for the preparation of adjacent cage dyads entrapped within the Y-zeolite framework. Specifically, the Y-zeolite entrapped complex, Z-[Ru(bpy)(2)(pypz)(2+) ] (where the prefix, Z, indicated a zeolite entrapped complex, bpy = 2,2'-bipyridine and pypz = 2-2-pyridylpyrazine), which contains only one reactive peripheral nitrogen atom, is shown to react with the reagent, (H(2)O)Ru(NH(3))(5)(2+), to yield the entrapped Z-[Ru(bpy)(2)(pypz)-Ru(NH(3))(5)](4+) complex. Treatment with a large excess of bpy, according to previously documented procedures, leads to the formation of the entrapped adjacent cage dyad, Z-[Ru(bpy)(2)(pypz)(2+)/Ru(bpy)(3)(2+)], wherein the two-component complexes are entrapped in adjacent supercages. Spectroscopic measurements confirm the integrity of the component complexes and document a strong interaction between them. Most importantly, it is shown that a second treatment of this material with a large excess of the[(H(2)O)Ru(NH(3))(5)](2+) reagent does not lead to formation of significant amounts of Z-[Ru(bpy)(2)(pypz)-Ru(NH(3))(5)](4+); i.e., the presence of the Ru(bpy)(3)(2+) in the cage adjacent to the primary complex shields the latter from further reaction with the ruthenium pentammine reagent. This result demonstrates that, during the formation of the Ru(bpy)(3)(2+) secondary complex, the detached Ru(NH(3))(5)(2+) fragment does not drift into remote supercages, thereby providing unequivocal evidence for the high efficiency of the synthetic procedure for adjacent cage dyad formation. Furthermore, this result also makes it clear that rotation of the tris-ligated primary complex is restricted by the confinement of the Y-zeolite supercage to the extent that the single reactive peripheral nitrogen cannot be repositioned to a different window of the surrounding supercage.

Raman spectroscopy of an O(2)-Co(II)bleomycin-calf thymus DNA adduct: alternate polymer conformations.

Bleomycin (Blm) is an antitumor agent which binds to specific sequences of DNA and as HO(2)-Fe(III)Blm causes single and double strand cleavage. In the present investigation, binding of O(2)-Co(II)Blm to a native DNA polymer, calf thymus DNA, was examined using conventional Raman spectroscopy. O(2)-Co(II)Blm is a model for O(2)-Fe(II)Blm, the direct precursor of HO(2)-Fe(III)Blm. Although the DNA polymer retained a predominant B-form structure, Raman spectral evidence was obtained for localized structural changes to A, C and Z-DNA forms. The presence of these alternate DNA forms within B-DNA implied the presence of B/A, B/C and B/Z junctions. The observed changes in DNA secondary structure were attributed to perturbation of structural water resulting from binding of O(2)-Co(II)Blm within the minor groove.

Resonance raman studies of heme structural differences in subunits of deoxy hemoglobin.

Low frequency resonance Raman (RR) spectra are reported for deoxy hemoglobin (Hb), its isolated subunits, its analogue bearing methine-deuterated hemes in all four subunits (Hb-d(4)), and the hybrids bearing the deuterated heme in only one type of subunit, which are [alpha(d4)beta(h4)](2) and [alpha(h4)beta(d4)](2). Analyzed collectively, the spectra reveal subunit-specific modes that conclusively document subtle differences in structure for the heme prosthetic groups in the two types of subunits within the intact tetramer. Not surprisingly, the most significant spectral differences are observed in the gamma(7) mode that has a major contribution from out of plane bending of the methine carbons, a distortion that is believed to relieve strain in the high-spin heme prosthetic groups. The results provide convincing evidence for the utility of selectively labeled hemoglobin hybrids in unraveling the separate subunit contributions to the RR spectra of Hb and its various derivatives and for thereby detecting slight structural differences in the subunits.

The development of zeolite-entrapped organized molecular assemblies.

A brief summary is presented of the development of organized molecular assemblies entrapped within the supercages of Y-zeolite. Emphasis is placed on work originating in the author's laboratory, although a discussion of some of the important contributions made by other workers, which inspired and facilitated this work, are included. Following pioneering studies by Lunsford and co-workers, which demonstrated the feasibility of encapsulating the common photosensitizer [Ru(bpy)3]2+ within the Y-zeolite supercage, Dutta and co-workers documented efficient photoinduced electron transfer to viologen acceptors occupying neighboring supercages. We have extended the range of available materials by developing synthetically versatile methods to permit the incorporation of heteroleptic complexes, including constituent ligands which contain peripheral nitrogen donor groups; for example, 2,2'-bipyrazine. In an impressive study employing zeolite-excluded acceptors, Dutta and co-workers showed that the reducing equivalents available from photoinduced electron transfer from the zeolite entrapped sensitizer to intra-zeolite acceptors could be transferred to the extra-zeolite acceptors in aqueous suspensions, although the net charge-separation efficiency was low, presumably because of a persistent relatively efficient back-electron transfer process involving the primary photoproduct; that is, the entrapped sensitizer-acceptor dyad. Exploiting the susceptibility of certain heteroleptic complexes to add reactive ruthenium reagents, methods were developed to construct spatially organized donor-sensitizer-acceptor triads within the supercage framework of Y-zeolite. Such assemblies exhibit dramatically improved net charge-separation efficiencies, presumably as a consequence of inhibiting the wasteful back-electron transfer reaction between the initial sensitizer-acceptor couple.

Resonance Raman studies of cytochrome P450BM3 and its complexes with exogenous ligands.

Resonance Raman spectra are reported for both the heme domain and holoenzyme of cytochrome P450BM3 in the resting state and for the ferric NO, ferrous CO, and ferrous NO adducts in the absence and presence of the substrate, palmitate. Comparison of the spectrum of the palmitate-bound form of the heme domain with that of the holoenzyme indicates that the presence of the flavin reductase domain alters the structure of the heme domain in such a way that water accessibility to the distal pocket is greater for the holoenzyme, a result that is consistent with analogous studies of cytochrome P450cam. The data for the exogenous ligand adducts are compared to those previously reported for corresponding derivatives of cytochrome P450cam and document significant and important differences for the two proteins. Specifically, while the binding of substrate induces relatively dramatic changes in the nu(Fe-XY) modes of the ferrous CO, ferric NO, and ferrous NO derivatives of cytochrome P450cam, no significant changes are observed for the corresponding derivatives of cytochrome P450BM3 upon binding of palmitate. In fact, the spectral data for substrate-free cytochrome P450BM3 provide evidence for distortion of the Fe-XY fragment, even in the absence of substrate. This apparent distortion, which is nonexistent in the case of substrate-free cytochrome P450cam, is most reasonably attributed to interaction of the Fe-XY fragment with the F87 phenylalanine side chain. This residue is known to lie very close to the heme iron in the substrate-free derivative of cytochrome P450BM3 and has been suggested to prevent hydroxylation of the terminal, omega, position of long-chain fatty acids.

A systematic approach toward the analysis of drug-DNA interactions using Raman spectroscopy: the binding of metal-free bleomycins A(2) and B(2) to calf thymus DNA.

Bleomycins A(2) and B(2) are the two active components in the antineoplastic drug Blenoxane. DNA is targeted by this drug in cancer cells and the mode of action of this drug involves DNA binding. Ambiguity exists as to the way in which bleomycin binds to DNA. Raman spectroscopy was used to examine both calf thymus DNA and a bleomycin/DNA complex at two temperatures. A curvefitting technique was applied to these spectra for a spectral region obscured by many overlapping bands associated with the nucleotide bases in order to derive information about frequencies, bandwidths, and intensities of the vibrational modes in this region. This allowed identification and analysis of bands associated with specific assigned nucleotide base residues. Upon binding of bleomycin, several significant changes in bandwidth, intensities, and frequencies relative to uncomplexed DNA were observed consistently at both higher (30 degrees C) and lower (19 degrees C) temperature. The data presented here support at least a partial intercalation mode of binding for bleomycin that is temperature dependent and more pronounced at the more physiologically relevant temperature of 30 degrees C.

The presence of two modes of binding to calf thymus DNA by metal-free bleomycin: a low frequency Raman study.

Double-stranded DNA is targeted by bleomycin in cancer cells and ambiguity exists as to its mode of DNA binding. A conventional Raman study was performed on drug/DNA complexes in which the low frequency spectral region (560-930 cm(-1)) was examined at two temperatures (19 and 30 degrees C). At 30 degrees C, a global Raman hypochromism was observed consistent with partial intercalation of the bithiazole moiety. At 19 degrees C, Raman hypochromism (increased base pair stacking) was detected for bands associated with GC base pairs while Raman hyperchromism (base pair destacking) was evident for bands associated with AT base pairs. These results suggest that intercalation of the bithiazole moiety occurs with greater disruption of the more efficiently stacked AT base pairs at the lower temperature. Evidence for minor groove binding was indicated by an increase in the population of bands corresponding to C3' endo sugar conformations resulting from drug induced local desolvation of the DNA polymer.

Resonance Raman spectra of native and mesoheme-reconstituted horseradish peroxidase and their catalytic intermediates.

Resonance Raman studies of native and mesoheme-reconstituted horseradish peroxidase and their catalytic intermediates, known as Compounds I and II, have been conducted using both near UV ( approximately 350 nm) and visible (406.7 nm) excitation. Careful power studies indicate that the authentic Compound I spectra are obtainable using near UV excitation, but that use of visible excitation results in contamination of the Compound I spectrum with the spectrum of a Compound II-like photoproduct. Using H218O2, the nu(Fe=O) stretching modes for both systems are unambiguously identified, for the first time, at approximately 790 cm-1. The authentic Compound I spectra are indicative of an 2A1u-like ground state for both the native and the mesoheme-reconstituted proteins. Finally, the possible biological implications of such information are briefly discussed.

Resonance Raman investigation of cyanide ligated beef liver and Aspergillus niger catalases.

Resonance Raman spectroscopy has been used to investigate the properties of cyanide-bound beef liver catalase (BLC) and Aspergillus niger catalase (ANC) in the pH range 4.9-11.5. Evidence has been obtained for the binding of cyanide to both BLC and ANC in two binding geometries. The first conformer, exhibiting the nu[Fe-CN] stretching mode at a higher frequency than the delta[Fe-C-N] bending mode, exists as an essentially linear Fe-C-N linkage. For both BLC-CN and ANC-CN, the nu[Fe-CN] and delta[Fe-C-N] frequencies of this conformer were practically identical and observed at approximately 434 and approximately 413 cm-1, respectively. The second conformer exhibits a nu[Fe-CN] mode at lower frequency than the delta[Fe-C-N] mode, and is thus characteristic of a bent Fe-C-N linkage. The nu[Fe-CN] and delta[Fe-C-N] modes were identified at 349 and 445 cm-1, respectively, for BLC-CN, and at 350 and 456 cm-1, respectively, for ANC-CN. The two conformers persist in the pH range 4.9-11.5. Furthermore, upon raising the pH to 11.5, the nu[Fe-CN] mode of the linear conformer of BLC-CN downshifts to 429 cm-1 while that of the bent conformer remains unchanged. The observed pH-dependent shift is attributed to the deprotonation of a distal-side amino acid residue, probably a distal histidine. The Fe-C-N axial vibrations of the two conformers identified for ANC-CN did not show any significant pH-dependent shifts, indicating a more stable hydrogen bonding interaction relative to BLC-CN.

Low frequency vibrational modes of oxygenated myoglobin, hemoglobins, and modified derivatives.

The low frequency resonance Raman spectra of the dioxygen adducts of myoglobin, hemoglobin, its isolated subunits, mesoheme-substituted hemoglobin, and several deuteriated heme derivatives are reported. The observed oxygen isotopic shifts are used to assign the iron-oxygen stretching (approximately 570 cm-1) and the heretofore unobserved delta (Fe-O-O) bending (approximately 420 cm-1) modes. Although the delta (Fe-O-O) is not enhanced in the case of oxymyoglobin, it is observed for all the hemoglobin derivatives, its exact frequency being relatively invariable among the derivatives. The lack of sensitivity to H2O/D2O buffer exchange is consistent with our previous interpretation of H2O/D2O-induced shifts of v(O-O) in the resonance Raman spectra of dioxygen adducts of cobalt-substituted heme proteins; namely, that those shifts are associated with alterations in vibrational coupling of v(O-O) with internal modes of proximal histidyl imidazole rather than to steric or electronic effects of H/D exchange at the active site. No evidence is obtained for enhancement of the v(Fe-N) stretching frequency of the linkage between the heme iron and the imidazole group of the proximal histidine.

Resonance Raman study of cyanide-ligated horseradish peroxidase. Detection of two binding geometries and direct evidence for the "push-pull" effect.

Resonance Raman spectroscopy has been employed to investigate the structure of cyanide adducts of the basic isoenzymes of horseradish peroxidase (HRP) in the pH range 5.5-12.5. Evidence for the binding of cyanide in two forms, characterized by the reversal of ordering of the Fe-CN stretching and Fe-C-N bending vibrations, is observed. Moreover, it is shown that both conformers exhibit an acid-alkaline transition in the pH range employed. In the first conformer, the Fe-C-N linkage is essentially linear, exhibiting axial Fe-CN stretching and Fe-C-N bending frequencies at 453 and 405 cm-1, respectively (at pH 5.5) (Lopez-Garriga et al., 1990). In the second conformer, the Fe-C-N fragment is bent, and the axial stretching and bending modes have been identified at 360 and 422 cm-1 at pH 5.5. At pH 12.5, the v[Fe-CN] stretching mode of the linear conformer shifts down by 9 cm-1 to 444 cm-1 while the bending frequency remains unchanged. For the bent conformer at this pH, the stretching mode shifts to 355 cm-1 (-5 cm-1), and the bending vibration shifts slightly to lower frequency by 2 cm-1 to 420 cm-1. The observed pH-dependent shift of the v[Fe-CN] stretching mode of the linear conformer is attributed to the direct effect of deprotonation of a distal-side amino acid residue while the shift of v[Fe-CN] of the bent conformer is most reasonably ascribable to indirect alteration of the iron-proximal histidine linkage induced by the distal-side deprotonation, a spectral response which reflects a protein-coupled "push-pull" mechanism for heterolytic O-O bond cleavage.

Distinct heme active-site structure in lactoperoxidase revealed by resonance Raman spectroscopy.

Low-frequency resonance Raman spectra of the cyanide and carbon monoxide adducts of lactoperoxidase are obtained with Soret excitation. The nu(Fe-CN) and delta(Fe-C-N) modes are detected at 360 and 453 cm-1, respectively. Upon the isotopic substitution of 13C14N, 12C15N, and 13C15N, the band at 453 cm-1 in the natural abundance adduct shifts to 448, 452, and 445 cm-1, while the 360-cm-1 peak shifts to 358, 357, and 356 cm-1, respectively. The 360-cm-1 band is shifted to 355 cm-1 when the pH is changed from 7.0 to 10.5. On the basis of a previous normal-mode analysis of the cyanoferric adduct of myeloperoxidase, a bent Fe-C-N linkage is suggested for the cyanide adduct of lactoperoxidase. The nu(Fe-CN) (374 cm-1) and delta(Fe-C-N) (480 cm-1) modes are observed for the cyanide adduct of reduced lactoperoxidase. For the carbon monoxide adduct, the nu(Fe-CO) (533 cm-1) and delta(Fe-C-O) (578 cm-1) modes at pH 7.0 are observed to shift to 498 and 570 cm-1 as the pH is raised from 7.0 to 10.0. The strong intensity of delta(Fe-C-O) at both acid and alkaline pHs, along with a suggested bent structure of the Fe-C-N moiety, implies a narrow heme pocket for lactoperoxidase.

Heme active-site structural characterization of chloroperoxidase by resonance Raman spectroscopy.

Resonance Raman spectra are reported for the nitric oxide adducts of ferric and ferrous chloroperoxidase and carbon monoxide adducts of ferrous chloroperoxidase. The stretching, v(Fe-NO), and bending, delta(FeNO), modes are detected at 538 and 558 cm-1, respectively, for the ferric nitrosylchloroperoxidase. These two bands shift to 534 and 546 cm-1, respectively, upon substitution by 15N16O. The v(Fe-NO) mode of the nitric oxide adduct of ferrous chloroperoxidase is located at 542 cm-1, which shifts to 528 (15N16O), 540 (14N18O), and 524 (15N18O) cm-1 as the mass of the bound nitric oxide increases by 1 atomic unit. Two distinct states of the carbon monoxide adduct of chloroperoxidase, the acidic and alkaline forms, are found to undergo a reversible pH-induced transition. The v(Fe-CO) mode shifts from 484 to 492 cm-1 and the delta(FeCO) mode at 562 cm-1 disappears as the pH is reduced from 6.0 to 3.3. In addition, two low frequency modes at 382 and 420 cm-1, assignable to the delta(CbC1C2) bending of propionate and vinyl groups, respectively, also show pH sensitivity. The results suggest a peroxidase-like heme active-site environment for chloroperoxidase and indicate a facile conformational change of heme groups accompanying the acid-base transition.

Resonance Raman studies of the carbonmonoxy form of catalase. Evidence for and effects of phenolate ligation.

Resonance Raman spectra are reported for the carbon monoxide (CO) adduct of catalase formed from the reaction of peracetic acid or hydrogen peroxide with the azide adduct of catalase in the presence of CO. The expected three normal vibrations of the FE-CO fragment are detected at 1,908,593 and 543 cm-1 for the nu(C-O), delta(Fe-C-O) and nu(Fe-CO), respectively. The expected coordination of the phenolate group in this adduct is confirmed by the enhancement of an internal vibration of phenolate, nu 19a at 1,515 cm-1, and an extraordinary intensity enhancement of the nu(Fe-CO) mode.

Resonance Raman studies of hemoglobins reconstituted with mesoheme. Unperturbed iron-histidine stretching frequencies in a functionally altered hemoglobin.

Hybrid hemoglobins, containing mesoheme in one type of subunit and protoheme in the partner subunits, have been studied by resonance Raman spectroscopy. These hybrids have been studied in both the met hybrid and fully reduced, deoxy forms. Judicious choice of laser excitation frequency permits selective enhancement of modes associated with each type of subunit; i.e., either meso- or protoheme-containing subunit. The assignments of low-frequency modes of meso- and protoheme are briefly discussed with special reference to the iron-histidine linkage. Despite functional differences between the hybrids, no significant changes in the strength of the iron-histidine linkages are detected by resonance Raman spectroscopy. These results are discussed with reference to recent high-resolution NMR studies of these same hybrids.

A porphyrin-DNA exciplex: resonance Raman spectra of electronically excited Cu(TMpy-P4) bound to poly(dA-dT).poly(dA-dT).

The resonance Raman spectra of water-soluble porphyrins, Cu(TMpy-P4) and Ni(TMpy-P4), and their mixtures with DNA, Poly(dG-dC).Poly(dG-dC), and Poly(dA-dT).Poly(dA-dT) were measured using 426 nm pulsed laser excitation (and 556 nm for some applications). At high laser power, the solution of Cu(TMpy-P4) mixed with DNA or Poly(dA-dT).Poly(dA-dT) exhibits new bands at 1550 and 1349 cm-1 that are not observed for Cu(TMpy-P4) alone or for Cu(TMpy-P4) mixed with Poly(dG-dC).Poly(dG-dC). These extra bands do not appear when the resonance Raman spectra are measured by a cw laser or by a pulsed laser with low power. Similar mixtures of M(TMpy-P4) (where M = Ni, Zn, Co, Mn, and H2) with these nucleic acids exhibit no such bands even by high power pulsed laser excitation. We attribute the new resonance Raman bands to an electronically excited Cu(TMpy-P4), stabilized by forming an exciplex with the A-T site of the nucleic acid. The minimum lifetime value of such an exciplex was estimated to be on the order of 10 ps.