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1.
Opt Express ; 30(13): 22501-22511, 2022 Jun 20.
Artigo em Inglês | MEDLINE | ID: mdl-36224946

RESUMO

The feasibility of using direct broad band optical monitoring control in the fabrication of the ultra-steep dichroic filters based on resonant structures is investigated. Using computational manufacturing and deposition experiments, the role of the errors self-compensation effect is clarified by comparing the results of direct broad band optical monitoring and time monitoring. The errors correlation strength of ultra-steep dichroic filter is analyzed and it shows that the correlation calculated by the current model is not strong. The relationship between errors correlation and errors self-compensation effect for the ultra-steep dichroic filter is discussed.

2.
Molecules ; 27(2)2022 Jan 10.
Artigo em Inglês | MEDLINE | ID: mdl-35056743

RESUMO

The model of Regularized Quantum Mechanical Force Field (RQMFF) was applied to the joint treatment of ab initio and experimental vibrational data of the four primary nucleobases using a new algorithm based on the scaling procedure in Cartesian coordinates. The matrix of scaling factors in Cartesian coordinates for the considered molecules includes diagonal elements for all atoms of the molecule and off-diagonal elements for bonded atoms and for some non-bonded atoms (1-3 and some 1-4 interactions). The choice of the model is based on the results of the second-order perturbation analysis of the Fock matrix for uncoupled interactions using the Natural Bond Orbital (NBO) analysis. The scaling factors obtained within this model as a result of solving the inverse problem (regularized Cartesian scale factors) of adenine, cytosine, guanine, and thymine molecules were used to correct the Hessians of the canonical base pairs: adenine-thymine and cytosine-guanine. The proposed procedure is based on the block structure of the scaling matrix for molecular entities with non-covalent interactions, as in the case of DNA base pairs. It allows avoiding introducing internal coordinates (or coordinates of symmetry, local symmetry, etc.) when scaling the force field of a compound of a complex structure with non-covalent H-bonds.


Assuntos
DNA/química , Modelos Químicos , Adenina/química , Pareamento de Bases , Citosina/química , Guanina/química , Análise Espectral , Timina/química , Vibração
3.
Phys Chem Chem Phys ; 22(39): 22477-22492, 2020 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-32996973

RESUMO

The equilibrium geometry of the boat conformation (Cs point group symmetry) of the 6-methyl-1,5-diazabicyclo[3.1.0]hexane (MDABH) molecule, absolutely dominating under normal conditions, was studied by the gas-phase electron diffraction (GED) method at 20 °C with the involvement of NMR, IR, and Raman spectroscopic data and quantum chemical calculations. The potential function of ring-puckering deformation for the MDABH bicyclic system was calculated at the MP2/aug-cc-pVTZ and B3LYP/cc-pVTZ levels. It was found by MP2 calculation that the total energy of the boat conformation is 3.52 kcal mol-1 lower than that of the chair conformation. For the first time, we recorded the IR and Raman spectra for liquid samples of MDABH and assigned their peculiarities only to boat conformation vibrations using the Pulay technique of scaling quantum chemical force fields. In the case of the chair form, transferability of the refined scale factors was used for reliable prediction of the location of its fundamental frequencies. According to the joint structural analysis of the above data, the most important equilibrium geometric re-parameters for the boat conformation of the MDABH molecule were determined to be (bond lengths in Å; angles in degrees, Cs symmetry): C2N1 = 1.466(2), C2C3 = 1.523(2), N1N5 = 1.512(2), C6N1 = 1.440(2), C6C7 = 1.487(2), ∠C2N1N5 = 106.1(2), ∠N1C2C3) = 110.2(4), ∠C2C3C4 = 99.9(4), ∠N1N5C6 = 58.3(1), ∠N1C6N5 = 63.3(1), ∠N1C6C7 = 114.9(6), ∠C6N1C2 = 111.8(1), ∠N5N1C2C3 = 17.3(1), ∠N1C2C3C4 = -26.8(2), θ = C2C3C4/C2N1N5C4 = -26.2(3), φ = N1C6N5/C2N1N5C4 = 74.0(1). Comparison of these and earlier results showed that the NN bond length in the diaziridine ring is very weakly dependent on the cis- or trans-arrangement of substituents at the nitrogen atoms.

4.
Phys Chem Chem Phys ; 21(10): 5598-5613, 2019 Mar 06.
Artigo em Inglês | MEDLINE | ID: mdl-30785435

RESUMO

For the first time, we applied a gas-phase electron diffraction (GED) method together with vibrational spectroscopy and quantum chemical calculations to investigate the equilibrium geometries of achiral meso and enantiomeric diastereomers of tetramezine [1,2-bis-(3,3-dimethyldiaziridin-1-yl)ethane] and their ratio in the mixture. In the joint structural analysis of these data, a new approach based on PES parameters is used in the framework of a static molecular model (small amplitude motion approximation). The agreement between the theoretical and experimental molecular intensities is characterized by a divergence factor Rf of 5.9%. The experimental re-parameters of tetramezine diastereomers agreed with our B3LYP/cc-pVTZ and MP2/cc-pVTZ calculations, which predicted the total energy of the meso form (Ci point group symmetry) to be lower than that of the enantiomeric form (C2 point group symmetry), by 6.4 and 4.7 kJ mol-1, respectively. The experimentally measured percentages of the meso and both enantiomeric diastereoisomers at 360 K were 70% and 30%, respectively. We characterized the meso form using 2D NMR spectra. Our GED data are in good agreement with the X-ray diffraction analysis of the meso form. This result reflects the weak effect of intermolecular interactions in the crystal. We assigned the IR spectrum bands of the crystalline meso form using the Pulay technique of scaling quantum chemical force fields. In the case of the enantiomeric form calculated at the same level, transferability of the refined scale factors was used for more reliable prediction of the mutual location and interpretation of its fundamental frequencies.

5.
J Phys Chem A ; 119(9): 1657-65, 2015 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-25633645

RESUMO

Dynamic structural analysis of the molecules possessing large-amplitude degrees of freedom has been attempted by many researchers; however, so far, electron diffraction investigations involved only one large-amplitude coordinate (internal rotation or bending). The current state of computational facilities allows extending of the general dynamic approach to the systems possessing two or more large-amplitude motions. This paper presents the first practical implementation of the theoretical method developed previously by the authors for solving the dynamic-structural problem with two or more large-amplitude coordinates; the procedure is applied to a molecule of 3-nitrostyrene. The molecule is represented as a set of pseudoconformers built on a two-dimensional grid corresponding to both internal rotation coordinates present in the molecule (with 10-30° steps by each angle); altogether, up to 342 pseudoconformers were used. Structural analysis was based on the experimental electron diffraction data supported by quantum chemical calculations (at the MP2 and B3LYP levels of theory) and molecular spectroscopy data. Quantum chemistry predicts the planar structure of both syn- and anti- stable conformations with close energies and weak interaction between internal rotations of nitro and vinyl groups. The gas-phase electron diffraction experimental data are compatible with the quantum chemical predictions. The principal equilibrium geometry parameters of the molecule (syn- conformation) have been determined as follows: r(e)(C-C)(ring, avg.) = 1.391(1) Å, r(e)(C-C) = 1.477(5) Å, r(e)(C═C) = 1.333(7) Å, r(e)(C-N) = 1.463(5) Å, r(e)(N═O) = 1.227(3) Å, ∠e(O═N═O) = 124.3 (4)°. Experimental data for this molecule are insufficient to make estimates of the barrier heights of internal rotation; the population ratio of syn- and anti- conformations is evaluated as 50 ± 20%. Results of our investigation confirm the presence of significant internal rotations in the 3-nitrostyrene molecule.

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