Eimeria species occurrence varies between geographic regions and poultry production systems and may influence parasite genetic diversity.

Coccidiosis is one of the biggest challenges faced by the global poultry industry. Recent studies have highlighted the ubiquitous distribution of all Eimeria species which can cause this disease in chickens, but intriguingly revealed a regional divide in genetic diversity and population structure for at least one species, Eimeria tenella. The drivers associated with such distinct geographic variation are unclear, but may impact on the occurrence and extent of resistance to anticoccidial drugs and future subunit vaccines. India is one of the largest poultry producers in the world and includes a transition between E. tenella populations defined by high and low genetic diversity. The aim of this study was to identify risk factors associated with the prevalence of Eimeria species defined by high and low pathogenicity in northern and southern states of India, and seek to understand factors which vary between the regions as possible drivers for differential genetic variation. Faecal samples and data relating to farm characteristics and management were collected from 107 farms from northern India and 133 farms from southern India. Faecal samples were analysed using microscopy and PCR to identify Eimeria occurrence. Multiple correspondence analysis was applied to transform correlated putative risk factors into a smaller number of synthetic uncorrelated factors. Hierarchical cluster analysis was used to identify poultry farm typologies, revealing three distinct clusters in the studied regions. The association between clusters and presence of Eimeria species was assessed by logistic regression. The study found that large-scale broiler farms in the north were at greatest risk of harbouring any Eimeria species and a larger proportion of such farms were positive for E. necatrix, the most pathogenic species. Comparison revealed a more even distribution for E. tenella across production systems in south India, but with a lower overall occurrence. Such a polarised region- and system-specific distribution may contribute to the different levels of genetic diversity observed previously in India and may influence parasite population structure across much of Asia and Africa. The findings of the study can be used to prioritise target farms to launch and optimise appropriate anticoccidial strategies for long-term control.

Decontamination of heavy metal laden sewage sludge with simultaneous solids reduction using thermophilic sulfur and ferrous oxidizing species.

A possibility of using simultaneous sewage sludge digestion and metal leaching (SSDML) process at the thermophilic temperature to remove heavy metals and suspended solids from sewage sludge is explored in this study. Though thermophilic sludge digestion efficiently produces a stable sludge, its inability to remove heavy metals requires it to be used in tandem with another process like bioleaching for metal reduction. Previously, different temperature optima were known for the heterotrophs (thermophilic) responsible for the sludge digestion and the autotrophs involved in bioleaching (mesophilic), because of which the metal concentration was brought down separately in a different reactor. In our study, SSDML process was carried out at 50 °C (thermophilic) by using ferrous sulfate (batch-1) and sulfur (batch-2) as the energy source in two reactors. The concentration of volatile suspended solids reduced by >40% in both batches, while that of heavy metals zinc, copper, chromium, cadmium and nickel decreased by >50% in both batch-1 and batch-2. Lead got leached out only in batch-1. Using 16S rRNA gene-based PCR-denaturing gradient gel electrophoresis analysis, Alicyclobacillus tolerans was found to be the microorganism responsible for lowering the pH in both the reactors at thermophilic temperature. The indicator organism count was also below the maximum permissible limit making sludge suitable for agricultural use. Our results indicate that SSDML at thermophilic temperature can be effectively used for reduction of heavy metals and suspended solids from sewage sludge.

Genetic diversity within ITS-1 region of Eimeria species infecting chickens of north India.

Coccidiosis, caused by apicomplexan parasites of the genus Eimeria, inflicts severe economic losses to the poultry industry around the globe. In the present study, ITS-1 based species specific nested PCR revealed prevalence of E. acervulina, E. brunetti, E. maxima, E. mitis, E. praecox, E. necatrix and E. tenella in 79.2%, 12.5%, 64.6%, 89.6%, 60.4%, 64.6% and 97.9% poultry farms of north India, respectively. The ITS-1 sequences of different Eimeria spp. from north India were generated and analyzed to establish their phylogenetic relationship. The sequence identity with available sequences ranged from 80 to 100% in E. tenella, 95 to 100% in E. acervulina, 64 to 97% in E. necatrix, 96 to 99% in E. brunetti and 97 to 98% in E. mitis. Only long ITS-1 sequences of E. maxima could be generated in the present study and it had 80-100% identity with published sequences. Two out of the four ITS-1 sequences of E. maxima had mismatches in the published nested primer sequences from Australia, while one sequence of E. necatrix had a mismatch near 3' end of both forward and reverse published nested primer sequences, warranting for the need of designing new set of degenerate primers for these two species of Eimeria. In the phylogenetic tree, all isolates of E. acervulina, E. brunetti, E. mitis, E. tenella and E. necatrix clustered in separate clades with high bootstrap value. E. maxima sequences of north Indian isolates grouped in a long form of E. maxima clade. Complete ITS-1 sequences of E. necatrix and E. mitis are reported for the first time from India. Further studies are required with more number of isolates to verify whether these differences are unique to geographical locations.

Genetic characterization and phylogenetic relationships based on 18S rRNA and ITS1 region of small form of canine Babesia spp. from India.

Canine babesiosis is a vector borne disease caused by intra-erythrocytic apicomplexan parasites Babesia canis (large form) and Babesia gibsoni (small form), throughout the globe. Apart from few sporadic reports on the occurrence of B. gibsoni infection in dogs, no attempt has been made to characterize Babesia spp. of dogs in India. Fifteen canine blood samples, positive for small form of Babesia, collected from northern to eastern parts of India, were used for amplification of 18S rRNA gene (∼1665bp) of Babesia sp. and partial ITS1 region (∼254bp) of B. gibsoni Asian genotype. Cloning and sequencing of the amplified products of each sample was performed separately. Based on sequences and phylogenetic analysis of 18S rRNA and ITS1 sequences, 13 were considered to be B. gibsoni. These thirteen isolates shared high sequence identity with each other and with B. gibsoni Asian genotype. The other two isolates could not be assigned to any particular species because of the difference(s) in 18S rRNA sequence with B. gibsoni and closer identity with Babesiaoccultans and Babesiaorientalis. In the phylogenetic tree, all the isolates of B. gibsoni Asian genotype formed a separate major clade named as Babesia spp. sensu stricto clade with high bootstrap support. The two unnamed Babesia sp. (Malbazar and Ludhiana isolates) clustered close together with B. orientalis, Babesia sp. (Kashi 1 isolate) and B. occultans of bovines. It can be inferred from this study that 18S rRNA gene and ITS1 region are highly conserved among 13 B. gibsoni isolates from India. It is the maiden attempt of genetic characterization by sequencing of 18S rRNA gene and ITS1 region of B. gibsoni from India and is also the first record on the occurrence of an unknown Babesia sp. of dogs from south and south-east Asia.

Drying, burning and emission characteristics of beehive charcoal briquettes: an alternative household fuel of Eastern Himalayan Region.

Beehive charcoal briquettes were produced from powdered charcoal in which soil was added as binder. It was found to be an eco-friendly, clean and economic alternative source of household fuel for the people of Eastern Himalayan Region. Experiments were conducted to determine natural drying behaviour, normalised burn rate, temperature profile and emission of CO, CO2, UBHC (unburnt hydrocarbons) and NO(x) of beehive briquettes prepared from 60:40; 50:50 and 40:60 ratios of charcoal and soil. It was observed that under natural drying conditions (temperature, humidity) briquettes took 433 hr to reach equilibrium moisture content of 5.56-10.29%. Page's model was found suitable to describe the drying characteristics of all three combinations. Normalised burn rate varied between 0.377-0.706% of initial mass min⁻¹. Total burning time of briquette ranged between 133-143 min. The peak temperature attained by briquettes ranged from 437 °C to 572 °C. All the briquette combinations were found suitable for cooking and space heating. Emission of CO, CO2, UBHC, NO and NO2 ranged between 68.4-107.2, 922-1359, 20.9-50.8, 0.19-0.29 and 0.34-0.64 g kg⁻¹, respectively which were less than firewood.

Impact of abrupt temperature increase on the performance of an anaerobic hybrid bioreactor and its intrinsic microbial community.

This study aimed to analyse the effect of sudden temperature increases (in the range of 45-65 °C) on the performance and the microbial community structure of a hybrid anaerobic reactor. The reactor recovered with time after every temperature shock up to the operating temperature of 55 °C. At 55 °C, a 10 °C shock resulting in an operating temperature of 65 °C, deteriorated the reactor's performance. At this condition, both, the diversity and the relative abundance of methanogenic groups, especially of Methanosaetaceae, were significantly affected as observed by DGGE fingerprinting and quantitative PCR. In contrast, at lower temperatures (i.e., 45 and 55 °C), thermal shocks seemed to have less effect due to the presence and maintenance of thermophilic strains, which prevented system deterioration. At 65 °C, the absence of any acetoclastic methanogen is assumed to be the cause of system failure.

Comparative Studies on Performance Characteristics of CI Engine Fuelled with Neem Methyl Ester and Mahua Methyl Ester and Its Respective Blends with Diesel Fuel.

In the present investigation, neem and mahua methyl ester were prepared by transesterification using potassium hydroxide as a catalyst and tested in 4-stroke single cylinder water cooled diesel engine. Tests were carried out at constant speed of 1500 rev/min at different brake mean effective pressures. A series of tests were conducted which worked at different brake mean effective pressures, OkPa, 1kPa, 2kPa, 3kPa, 4kPa, 5kPa, 6kPa and 6.5kPa. The performance and exhaust emission characteristics of the diesel engine were analyzed and compared with diesel fuel. Results showed that BTE of NME was comparable with diesel and it was noted that the BTE of N0100 is 63.11% higher than that of diesel at part load whereas it reduces 11.2% with diesel fuel at full load. In case of full load, NME showed decreasing trend with diesel fuel. BTE of diesel was 15.37% and 36.89% at part load and full load respectively. The observation indicated that BTE for MME 100 was slightly higher than diesel at part loads. The specific fuel consumption (SFC) was more for almost all blends at all loads, compared to diesel. At part load, the EGT of MME and its blends were showing similar trend to diesel fuel and at full load, the exhaust gas temperature of MME and blends were higher than diesel. Based on this study, NME could be a substitute for diesel fuel in diesel engine.

Carbon source--a strong determinant of microbial community structure and performance of an anaerobic reactor.

Industrial effluents differ in their organic composition thereby providing different carbon sources to the microbial communities involved in its treatment. This study aimed to investigate the correlation of microbial community structure with wastewater composition and reactor's performance. Self-immobilized granules were developed in simulated wastewater based on different carbon sources (glucose, sugarcane molasses, and milk) in three hybrid anaerobic reactors operated at 37°C. To study archaeal community structure, a polyphasic approach was used with both qualitative and quantitative analysis. While PCR-denaturing gradient gel electrophoresis of 16S rRNA gene did not reveal major shifts in diversity of archaea with change in substrate, quantification of different groups of methanogens and total bacteria by real-time PCR showed variations in relative abundances with the dominance of Methanosaetaceae and Methanobacteriales. These data were supported by differences in the ratio of total counts of archaea and bacteria analyzed by catalyzed reporter deposition - fluorescence in situ hybridization. During hydraulic and organic shocks, the molasses-based reactor showed the best performance followed by the milk- and the glucose-based reactor. The study indicates that carbon source shapes the microbial community structure more in terms of relative abundance with distinct metabolic capacities rather than its diversity itself.

A 10 year old boy with rectal carcinoma.

A 10 year old boy with mucinous carcinoma of rectum is a rare case at this age. Here the patient presented with constipation, mucus in stool & abdominal pain since one month. He got consultation from several physicians & went through sonology of whole abdomen several times. There he was missed diagnosed as a case of pyloric stenosis. We came to a probable diagnosis by doing simple digital rectal examination which seemed to be a hard rectal swelling. The diagnosis was established by colonoscopy followed by biopsy. Carcinoma rectum must be considered as a differential diagnosis if patient presents with altered bowel habit, per rectal bleeding, abdominal pain in conjunction with weight loss.

Emphysematous pyelonephritis - case report and evaluation of radiological features.

Emphysematous pyelonephritis (EPN) is an acute necrotizing parenchymal and peri-renal infection caused by gas-forming uropathogens. The predisposing factors are diabetes mellitus and ureteric obstruction. E. coli is the most frequently identified pathogen. The overall mortality is 43%. Computerized tomography (CT) is the imaging procedure of choice in determining the extent of infection and guiding management. Management of EPN has evolved from aggressive surgical intervention to conservative management. Although there are reports of improved renal function after medical therapy combined with relief of obstruction, most of the patients still require nephrectomy. We present a case of EPN and also evaluate the radiological features, prognosis, and current management of this disease.

Synthesis, structure and reactivity of tetranuclear square-type complexes of rhenium and manganese bearing pyrimidine-2-thiolate (pymS) ligands: versatile and efficient precursors for mono- and polynuclear compounds containing M(CO)(3) (M = Re, Mn) fragments.

Reactions of M(2)(CO)(10) (M = Re, Mn) with pyrimidine-2-thiol (pymSH) in the presence of Me(3)NO afford the tetranuclear square-type complexes [M(4)(CO)(12)(micro-kappa(3)-pymS)(4)] (, M = Re; , M = Mn). Both consist of four M(CO)(3) (M = Re, Mn) units, pairs of which are joined by tridentate pyrimidine-2-thiolate ligands. Treatment of with a variety of donor ligands results in cleavage of the square to afford mononuclear species with either a mono- or bidentate pyrimidine-2-thiolate ligand. Triphenylphosphine reacts with to give [Mn(CO)(3)(PPh(3))(kappa(2)-pymS)] () in which the pyrimidine-2-thiolate coordinates in a bidentate fashion. With diamines [M(CO)(3)(kappa(2)-L)(kappa(1)-pymS)] () (M = Re, Mn; L = 2,2'- bipy, 1,10-phen, en) result in which the pyrimidine-2-thiolate binds in a monodentate fashion through sulfur. With diphosphines, complexes with different stoichiometries and pyrimidine-2-thiolate binding modes are obtained depending on the nature of the metal and diphosphine. With dppm and dppe, gives [Re(CO)(2)(kappa(1)-pymS)(kappa(2)-dppm)] () and [Re(CO)(2)(kappa(2)-pymS)(kappa(1)-dppe)(2)] (), respectively, whereas affords [Mn(CO)(2)(kappa(2)-pymS)(kappa(1)-dppm)(2)] () and [Mn(CO)(2)(kappa(2)-pyS)(kappa(2)-dppe)] () under similar conditions. Reactions of with [Os(3)(CO)(10)(NCMe)(2)] affords mixed-metal butterfly clusters [MOs(3)(CO)(13)(micro(3)-kappa(2)-pymS)] () in which the group 7 metal occupies a wing-tip position and the pyrimidine-2-thiolate ligand caps a triangular Os(2)M face. With Ru(3)(CO)(12), carbon-sulfur bond cleavage occurs to give the tetranuclear clusters [MRu(3)(CO)(14)(micro(4)-S)(micro-kappa(1):eta(1)-pym)] () bearing both the extruded sulfur and the heterocyclic ring. The molecular structures of , and have been established by X-ray diffraction allowing the binding mode of the pyrimidine-2-thiolate ligands to be probed.

Leiomyoma of the urinary bladder.

Benign mesenchymal tumors of the bladder are rare and comprise less than 1% of the all bladder neoplasms. Leiomyoma is the most common type and comprises 35% of these tumors. These tumors may develop in submucosal (63%), intramural (7%) or subserosal (30%) layer, at any region of the bladder. The clinical presentation is varied and may include obstructive symptoms(50%), irritative symptoms (38%) and hematuria (11%). There are asymptomatic cases (19%), which make the diagnosis more difficult. Occurs more frequently in women than in men (3:1). The most common diagnostic investigations are ultrasonography, intravenous urography, computerized tomography scan and the magnetic resonance imaging. A 66 year old man presented with long standing voiding obstructive symptoms. Various examinations were performed in the last 2 years and was diagnosed either prostatic enlargement or bladder tumor. Cystoscopy was not available for confirming the diagnosis. The surgical exploration revealed a well-circumscribed mass at the bladder neck with moderate enlargement of the prostate. The pathological examination revealed a leiomyoma of the bladder. The post operative period was uneventful and the patient is doing well, without recurrence of the symptoms.

Detection of beet yellows virus by RT-PCR and immunocapture RT-PCR in Tetragonia expansa and Beta vulgaris.

Two sensitive methods, RT-PCR with phenol-extracted RNA or Triton X-100-released RNA and immunocapture RT-PCR (IR-RT-PCR) were used for the detection of Beet yellows virus (BYV) in young and old leaves of Tetragonia expansa and sugar beet (Beta vulgaris) and in sugar beet roots. Four oligonucleotide primer pairs proved suitable for the detection of BYV. The release of BYV RNA with Triton X-100 was shown to be a very effective and easy as compared to isolation of total RNA by phenol extraction with the same or higher sensitivity of subsequent PCR. Using the Triton X-100 release of RNA and IC-RT-PCR the sensitivity of detection was so high that pg amounts of BYV RNA occurring in dilutions up to 10(-6) of saps from young Tetragonia and sugar beet leaves could be detected.

Perturbative study of classical Ablowitz-Ladik type soliton dynamics in relation to energy transport in alpha-helical proteins.

Classical Ablowitz-Ladik type soliton dynamics from three closely related classical nonlinear equations is studied using a perturbative method. Model nonintegrable equations are derived by assuming nearest neighbor hopping of an exciton(vibron) in the presence of a full exciton(vibron)-phonon interaction in soft molecular chains in general and spines of alpha-helices in particular. In all cases, both trapped and moving solitons are found implying activation energy barrier for propagating solitons. Analysis further shows that staggered and nearly staggered trapped solitons will have a negative effective mass. In some models the exciton(vibron)-phonon coupling affects the hopping. For these models, when the conservation of probability is taken into account, only propagating solitons with a broad profile are found to be acceptable solutions. Of course, for the soliton to be a physically meaningful entity, total nonlinear coupling strength should exceed a critical value. On the basis of the result, a plausible modification in the mechanism for biological energy transport involving conformational change in alpha-helix is proposed. Future directions of the work are also mentioned.