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Genome Biol Evol ; 7(2): 493-504, 2015 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-25573958

RESUMO

A novel structure of nonautonomous long terminal repeat (LTR) retrotransposons called terminal repeat with GAG domain (TR-GAG) has been described in plants, both in monocotyledonous, dicotyledonous and basal angiosperm genomes. TR-GAGs are relatively short elements in length (<4 kb) showing the typical features of LTR-retrotransposons. However, they carry only one open reading frame coding for the GAG precursor protein involved for instance in transposition, the assembly, and the packaging of the element into the virus-like particle. GAG precursors show similarities with both Copia and Gypsy GAG proteins, suggesting evolutionary relationships of TR-GAG elements with both families. Despite the lack of the enzymatic machinery required for their mobility, strong evidences suggest that TR-GAGs are still active. TR-GAGs represent ubiquitous nonautonomous structures that could be involved in the molecular diversities of plant genomes.


Assuntos
Coffea/genética , Genoma de Planta , Retroelementos/genética , Sequências Repetidas Terminais/genética , Algoritmos , Sequência de Bases , Sequência Conservada/genética , Dosagem de Genes , Cadeias de Markov , Anotação de Sequência Molecular , Dados de Sequência Molecular , Família Multigênica , Transcrição Gênica
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