Monitoring of the Initial Stages of Diamond Growth on Aluminum Nitride Using In Situ Spectroscopic Ellipsometry.

The high thermal conductivity of polycrystalline diamond makes it ideally suited for thermal management solutions for gallium nitride (GaN) devices, with a diamond layer grown on an aluminum nitride (AlN) interlayer atop the GaN stack. However, this application is limited by the thermal barrier at the interface between diamond and substrate, which has been associated with the transition region formed in the initial phases of growth. In this work, in situ spectroscopic ellipsometry (SE) is employed to monitor early-stage microwave plasma-enhanced chemical vapor deposition diamond growth on AlN. An optical model was developed from ex situ spectra and applied to spectra taken in situ during growth. Coalescence of separate islands into a single film was marked by a reduction in bulk void fraction prior to a spike in sp2 fraction due to grain boundary formation. Parameters determined by the SE model were corroborated using Raman spectroscopy and atomic force microscopy.

Fast kinetics studies of the Lewis acid-base complexation of transient stannylenes with σ- and π-donors in solution.

The Lewis acid-base complexation chemistry of dimethyl- and diphenylstannylene (SnMe2 and SnPh2, respectively) in hexanes solution has been studied by laser photolysis methods. Complexation of the two stannylenes with a series of nine O-, S-, and N-donors (including cyclic and acyclic dialkyl ethers and sulfides, a primary, secondary, and tertiary amine, ethyl acetate and acetone), two alkenes, and an alkyne proceeds rapidly and reversibly to generate the corresponding stannylene-donor Lewis pairs, which have been detected in each case by time-resolved UV-vis absorption spectroscopy. The complexes exhibit UV-vis absorption maxima in the range of λmax ∼ 310-405 nm depending on the donor and substitution at tin. Bimolecular rate constants for complexation (kC), which could be determined for 14 of the 24 Lewis pairs that were studied, were found to fall within a factor of four of the diffusional limit in all cases, with SnMe2 showing consistently higher reactivity than SnPh2. Equilibrium constants for complexation (KC) could be measured for all but one of the stannylene-π- and O-donor pairs, the values corresponding to (gas phase) binding free energies in the range of +1.1 to -3.9 kcal mol-1. Comparison of the experimental equilibrium constants for complexation of SnMe2 and SnPh2 with methanol and diethyl ether to those measured previously for the homologous silylenes and germylenes indicates that Lewis acidity decreases in the order SiR2 > SnR2 > GeR2 for both the dimethyl- and diphenyltetrylene series, the diphenyl derivatives exhibiting significantly stronger Lewis acidity in all three cases. The experimental trends in the binding energies and UV-vis spectra of the complexes are reproduced well by density functional theory (DFT) calculations, which have been carried out at the (TD)ωB97XD/def2-TZVP level of theory. The experimental data also show evidence of a reaction between tetramethyldistannene (Me2Sn[double bond, length as m-dash]SnMe2, 4a) and amine donors, which is suggested to afford the corresponding amine-stabilized stannylidenestannylene structure. The mechanistic proposal is supported by DFT calculations of the complexation of 4a and SnMe2 with model O-, S- and N-donors.

Complete Genome Sequences of Three Fish-Associated Streptococcus agalactiae Isolates.

The whole-genome sequences are described here for three group B Streptococcus (GBS) (S. agalactiae) serotype Ib isolates obtained from tilapia (Oreochromis niloticus) farmed at sites in Honduras, Costa Rica, and the United States. The bacteria were isolated from the brains of fish displaying signs of streptococcosis.

Complete Genome Sequences of Three Streptococcus agalactiae Serotype Ia Isolates Obtained from Disease Outbreaks in Nile Tilapia (Oreochromis niloticus).

This paper describes the whole-genome sequences for three Streptococcus agalactiae serotype Ia isolates. The isolates were recovered from the brains of clinically sick tilapia, Oreochromis niloticus, that were suffering from streptococcosis. One isolate was from tilapia in the United States and the other two from fish in China.

A glimpse at the chemistry of GeH2 in solution. Direct detection of an intramolecular germylene-alkene π-complex.

The photochemistry of 3-methyl-4-phenyl-1-germacyclopent-3-ene (4) and a deuterium-labeled derivative (4-d(2)) has been studied in solution by steady state and laser flash photolysis methods, with the goal of detecting the parent germylene (GeH(2)) directly and studying its reactivity in solution. Photolysis of 4 in C(6)D(12) containing acetic acid (AcOH) or methanol (MeOH) affords 2-methyl-3-phenyl-1,3-butadiene (6) and the O-H insertion products ROGeH(3) (R = Me or Ac) in yields of ca. 60% and 15-30%, respectively, along with numerous minor products which the deuterium-labeling studies suggest are mainly derived from hydrogermylation processes involving GeH(2) and diene 6. The reaction with AcOH also affords H(2) in ca. 20% yield, while HD is obtained from 4-d(2) under similar conditions. Photolysis of 4 in THF-d(8) containing AcOH affords AcOGeH(3) and 6 exclusively, indicating that the nucleophilic solvent assists the extrusion of GeH(2) from 4 and alters the mechanism of the trapping reaction with AcOH compared to that in cyclohexane. Laser flash photolysis of 4 in hexanes yields a promptly formed transient exhibiting λ(max) ≈ 460 nm, which decays on the microsecond time scale with the concomitant growth of a second, much longer-lived transient exhibiting λ(max) ≈ 390 nm. The spectrum and reactivity of the 460 nm species toward various germylene trapping agents are inconsistent with those expected for free GeH(2); rather, the transient is assigned to an intramolecular Ge(II)-alkene π-complex of one of the isomeric substituted hydridogermylenes derived from a solvent-cage reaction between GeH(2) and its diene (6) coproduct, formed by addition of HGe-H across one of the C=C bonds. These conclusions are supported by the results of DFT calculations of the thermochemistry associated with π-complexation of GeH(2) with 6 and the formation of the isomeric vinylgermiranes and 1,2-hydrogermylation products. A different species is observed upon laser photolysis of 4 in THF solution and is assigned to the GeH(2)-THF complex on the basis of its UV-vis spectrum and rate constants for its reaction with AcOH and AcOD.

Silanones and silanethiones from the reactions of transient silylenes with oxiranes and thiiranes in solution. The direct detection of diphenylsilanethione.

The transient silylenes SiMe(2) and SiPh(2) react with cyclohexene oxide (CHO), propylene oxide (PrO), and propylene sulfide (PrS) in hydrocarbon solvents to form products consistent with the formation of the corresponding transient silanones and silanethiones, respectively. Laser flash photolysis studies show that these reactions proceed via multistep sequences involving the intermediacy of the corresponding silylene-oxirane or -thiirane complexes, which are formed with rate constants close to the diffusion limit in all cases and exhibit UV absorption spectra similar to those of the corresponding complexes with the nonreactive O- and S-donors, tetrahydrofuran and tetrahydrothiophene. The SiMe(2)-PrO and SiPh(2)-PrO complexes both exhibit lifetimes of ca. 300 ns, and are longer-lived than the corresponding complexes with CHO, which are both in the range of 230-240 ns. On the other hand, the silylene-PrS complexes are considerably shorter-lived and vary with silyl substituent; the SiMe(2)-PrS complex decays with the excitation laser pulse (i.e., τ ≤ 25 ns), while the SiPh(2)-PrS complex exhibits τ = 48 ± 3 ns. The decay of the SiPh(2)-PrS complex affords a long-lived transient product exhibiting λ(max) ≈ 275 nm, which has been assigned to diphenylsilanethione (Ph(2)Si═S) on the basis of its second order decay kinetics and absolute rate constants for reaction with methanol, tert-butanol, acetic acid, and n-butyl amine, for which values in the range of 1.4 × 10(8) to 3.2 × 10(9) M(-1) s(-1) are reported. The experimental rate constants for decay of the SiMe(2)-epoxide and -PrS complexes indicate free energy barriers (ΔG(‡)) of ca. 8.5 and ≤7.1 kcal mol(-1) for the rate-determining steps leading to dimethylsilanone and -silanethione, respectively, which are compared to the results of DFT (B3LYP/6-311+G(d,p)) calculations of the reactions of SiH(2) and SiMe(2) with oxirane and thiirane. The calculations predict a stepwise C-O cleavage mechanism involving singlet biradical intermediates for the silylene-oxirane complexes, and a concerted mechanism for silanethione formation from the silylene-thiirane complexes, in agreement with earlier ab initio studies of the SiH(2)-oxirane and -thiirane systems.

Photochemistry of cyclic trisilanes: "spring-loaded" precursors to methylphenylsilylene.

Two new cyclic trisilanes containing a SiMePh moiety in the central position have been synthesized, and their photochemistries studied by steady-state and laser flash photolysis methods. The yield of the transient silylene SiMePh increases at the expense of that of the corresponding cyclic silene derivative (formed by photochemical 1,3-silyl migration into the phenyl ring) as the ring size is decreased from 7 to 6, facilitating the direct detection of the silylene by laser flash photolysis. The UV/Vis spectrum of SiMePh in hexanes solution (lambda(max)=270, 505 nm) and absolute rate constants for its reaction with methanol, triethylsilane, a terminal alkene, alkyne, and two aliphatic dienes at 25 degrees C are reported.

1,1-Bis[4-(trifluoro-meth-yl)phen-yl]germetane.

The inter-nal C-Ge-C bond angle in the germacyclo-butane ring of the title compound, C(17)H(14)F(6)Ge or [Ge(C(3)H(6))(C(7)H(4)F(3))(2)], is 77.8 (3)°. The -CF(3) groups display rotational disorder [occupancies 0.604 (14):0.396 (14) and 0.410 (6):0.411 (6):0.179 (3)] and the germacyclo-butane ring also shows disorder [occupancies 0.604 (14):0.396 (14)].

Forward and backward pericyclic photochemical reactions have intermediates in common, yet cyclobutenes break the rules.

Photochemical pericyclic reactions are believed to proceed via a so-called pericyclic minimum on the lowest excited potential surface (S(1)), which is common to both the forward and backward reactions. Such a common intermediate has never been directly detected. The photointerconversion of 1,3-butadiene and cyclobutene is the prevailing prototype for such reactions, yet only diene ring closure proceeds with the stereospecificity that the Woodward-Hoffmann rules predict. This contrast seems to exclude a common intermediate. Using ultrafast spectroscopy, we show that the excited states of two cyclobutene/diene isomeric pairs are linked by not one, but by two common minima, p* and ct*. Starting from the diene side (cyclohepta-1,3-diene and cycloocta-1,3-diene), electrocyclic ring closure passes via the pericyclic minimum p*, whereas ct* is mainly responsible for cis-trans isomerization. Starting from the corresponding cyclobutenes (bicyclo[3.2.0]heptene-6 and bicyclo[4.2.0]octene-7), the forbidden isomer is formed from ct*. The path branches at the first (S(2)/S(1)) conical intersection towards p* and ct*. The fact that the energetically unfavorable ct* path can compete is ascribed to a dynamic effect: the momentum in C=C twist direction, acquired--such as in other olefins--in the Franck-Condon region of the cyclobutenes.

Diphenylsilylene.

Lamp or pulsed laser photolysis of 1,1,3,3-tetramethyl-2,2-diphenyl-1,2,3-trisilacycloheptane affords diphenylsilylene (SiPh2) with significantly higher selectivity than that reported previously from other SiPh2 precursors, allowing the direct detection of SiPh2 in solution for the first time. The UV/vis spectrum of the silylene in anhydrous hexane at 25 degrees C, determined by laser flash photolysis methods, agrees well with that obtained in frozen hydrocarbon matrixes, and that of the dimerization product, tetraphenyldisilene, is tentatively assigned. Absolute rate constants measured for the reaction of SiPh2 with a number of characteristic silylene scavengers correspond closely to those reported previously for SiMe2 with the same or similar substrates.

A combined experimental and theoretical study of the kinetics and mechanism of the addition of alcohols to electronically stabilized silenes: a new mechanism for the addition of alcohols to the Si=C bond.

The stabilized silene 1,1-bis(trimethylsilyl)-2-adamantylidenesilane (4) has been generated by photolysis of a novel trisilacyclobutane derivative in various solvents and studied directly by kinetic UV spectrophotometry. Silene 4 decays with second-order kinetics in degassed hexane solution at 23 degrees C (k/epsilon = 8.6 x 10(-6) cm s(-1)) due to head-to-head dimerization. It reacts rapidly with oxygen [k(25 degrees C) approximately 3 x 10(5) M(-1) s(-1)] but approximately 10 orders of magnitude more slowly with methanol (MeOH) than other silenes that have been studied previously. The data are consistent with a mechanism involving reaction with the hydrogen-bonded dimer of the alcohol, (MeOH)(2) (k = 40 +/- 3 M(-1) s(-1); k(H)/k(D) = 1.7 +/- 0.2). The stable analogue of silene 4, 1-tert-butyldimethylsilyl-1-trimethylsilyl-2-adamantylidenesilane (5), reacts approximately 50 times more slowly, but via the same mechanism. The mechanism for addition of water and methanol (ROH; R = H, Me) to 4, 5, and the model compound 1,1-bis(silyl)-2,2-dimethylsilene (3a) has been studied computationally at the B3LYP/6-31G(d) and MP2/6-31G(d) levels of theory. Hydrogen-bonded complexes with monomeric and dimeric methanol, in which the Si=C bond plays the role of nucleophile, have been located computationally for all three silenes. Reaction pathways have been characterized for reaction of the three silenes with monomeric and dimeric ROH and reveal significantly lower barriers for reaction with the dimeric form of the alcohol in each case. The calculations indicate that 5 should be approximately 40-fold less reactive toward dimeric MeOH than 4, in excellent agreement with the approximately 50-fold difference in the experimental rate constants for reaction in hexane solution.

Bimolecular hydrogen abstraction from phenols by aromatic ketone triplets.

Absolute rate constants for hydrogen abstraction from 4-methylphenol (para-cresol) by the lowest triplet states of 24 aromatic ketones have been determined in acetonitrile solution at 23 degrees C, and the results combined with previously reported data for roughly a dozen other compounds under identical conditions. The ketones studied include various ring-substituted benzophenones and acetophenones, alpha,alpha,alpha-trifluoroacetophenone and its 4-methoxy analog, 2-benzoylthiophene, 2-acetonaphthone, and various other polycyclic aromatic ketones such as fluorenone, xanthone and thioxanthone, and encompass n,pi*, pi,pi*(CT) and arenoid pi,pi* lowest triplets with (triplet) reduction potentials (E(red)*) varying from about -10 to -38 kcal mol(-1). The 4-methylphenoxyl radical is observed as the product of triplet quenching in almost every case, along with the corresponding hemipinacol radical in most instances. Hammett plots for the acetophenones and benzophenones are quite different, but plots of log k(Q) vs E(red)* reveal a common behavior for most of the compounds studied. The results are consistent with reaction via two mechanisms: a simple electron-transfer mechanism, which applies to the n,pi* triplet ketones and those pi,pi* triplets that possess particularly low reduction potentials, and a coupled electron-/proton-transfer mechanism involving the intermediacy of a hydrogen-bonded exciplex, which applies to the pi,pi* ketone triplets. Ketones with lowest charge-transfer pi,pi* states exhibit rate constants that vary only slightly with triplet reduction potential over the full range investigated; this is due to the compensating effect of substituents on triplet state basicity and reduction potential, which both play a role in quenching by the hydrogen-bonded exciplex mechanism. Ketones with arenoid pi,pi* states exhibit the fall-off in rate constant that is typical of photoinduced electron transfer reactions, but it occurs at a much higher potential than would be normally expected due to the effects of hydrogen-bonding on the rate of electron-transfer within the exciplex.

Direct detection of dimethylstannylene and tetramethyldistannene in solution and the gas phase by laser flash photolysis of 1,1-dimethylstannacyclopent-3-enes.

The photochemistry of 1,1-dimethyl- and 1,1,3,4-tetramethylstannacyclopent-3-ene (4a and 4b, respectively) has been studied in the gas phase and in hexane solution by steady-state and 193-nm laser flash photolysis methods. Photolysis of the two compounds results in the formation of 1,3-butadiene (from 4a) and 2,3-dimethyl-1,3-butadiene (from 4b) as the major products, suggesting that cycloreversion to yield dimethylstannylene (SnMe2) is the main photodecomposition pathway of these molecules. Indeed, the stannylene has been trapped as the Sn-H insertion product upon photolysis of 4a in hexane containing trimethylstannane. Flash photolysis of 4a in the gas phase affords a transient absorbing in the 450-520-nm range that is assigned to SnMe2 by comparison of its spectrum and reactivity to those previously reported from other precursors. Flash photolysis of 4b in hexane solution affords results consistent with the initial formation of SnMe2 (lambda(max) approximately 500 nm), which decays over approximately 10 micros to form tetramethyldistannene (5b; lambda(max) approximately 470 nm). The distannene decays over the next ca. 50 micros to form at least two other longer-lived species, which are assigned to higher SnMe2 oligomers. Time-dependent DFT calculations support the spectral assignments for SnMe2 and Sn2Me4, and calculations examining the variation in bond dissociation energy with substituent (H, Me, and Ph) in disilenes, digermenes, and distannenes rule out the possibility that dimerization of SnMe2 proceeds reversibly. Addition of methanol leads to reversible reaction with SnMe2 to form a transient absorbing at lambda(max) approximately 360 nm, which is assigned to the Lewis acid-base complex between SnMe2 and the alcohol.

Di- and trivalent organogermanium reactive intermediates. Kinetics and mechanisms of some reactions of diphenylgermylene and tetraphenyldigermene in solution.

The reactivity of diphenylgermylene (Ph2Ge) with several classes of germylene scavengers has been studied in hexane solution at 23 degrees C by laser flash photolysis of 3,4-dimethyl-1,1-diphenyl-1-germacyclopent-3-ene (1a), a clean and highly efficient precursor to the germylene and its dimer, tetraphenyldigermene (2a). The reactions studied include M-H insertion reactions with Group 14 hydrides (M = Si, Ge, Sn), halogen atom abstractions from bromo- and chlorocarbons, Lewis acid-base complexation with 1 degrees, 2 degrees, and 3 degrees aliphatic amines, and reaction with an aliphatic alkene, alkyne and diene, and oxygen. Absolute rate constants for (irreversible) scavenging of the germylene could be obtained by direct measurement of the germylene decay kinetics for all but the least efficient scavengers (triethylsilane, oxygen, chloroform, and 1-bromopentane), for which estimates of the rate constants were obtained by Stern-Volmer analysis of the reduction in digermene yield as a function of scavenger concentration. Distinctly different kinetic behavior is observed for scavenging of Ph2Ge by isoprene, 4,4-dimethyl-1-pentene, and triethylamine; in these cases, the results suggest that reaction is rapid (k(Q) = 3-6 x 10(9) M(-1)s(-1)) but reversible (K(eq) = 2500 - ca. 20,000 M(-1)) over the range of scavenger concentrations studied. The reactions with the C-C unsaturated compounds proceed via the intermediacy of long-lived transient species absorbing at <290 nm, which are tentatively assigned to the corresponding three-membered germanocycles on the basis of their UV spectra and lifetimes. Upper limits for the absolute rate constants for reaction of tetraphenyldigermene (2a) toward many of these reagents are also reported.

Organogermanium reactive intermediates. The direct detection and characterization of transient germylenes and digermenes in solution.

Diphenylgermylene (Ph2Ge) and its Ge=Ge doubly bonded dimer, tetraphenyldigermene (6a), have been characterized directly in solution for the first time by laser flash photolysis methods. The germylene is formed via (formal) cheletropic photocycloreversion of 3,4-dimethyl-1,1-diphenylgermacyclopent-3-ene (4a), which is shown to proceed in high chemical (>95%) and quantum yield (phi = 0.62) by steady-state trapping experiments with methanol, acetic acid, isoprene, and triethylsilane. Flash photolysis of 4a in dry deoxygenated hexane at 23 degrees C leads to the prompt formation of a transient assigned to Ph2Ge (lambda(max) = 500 nm; epsilon(max) = 1650 M(-1) cm(-1)), which decays with second-order kinetics (tau approximately 3 micros), with the concomitant growth of a second transient species that is assigned to digermene 6a (tau approximately 40 micros; lambda(max) = 440 nm). Analogous results are obtained from 1,1-dimesityl- and 1,1-dimethyl-3,4-dimethylgermacyclopent-3-ene (4b and 4c, respectively), which afford Mes2Ge (tau approximately 20 micros; lambda(max) = 560 nm) and Me2Ge (tau approximately 2 micros; lambda(max) = 480 nm), respectively, as well as the corresponding digermenes, tetramesityl- (6b; lambda(max) = 410 nm) and tetramethyldigermene (6c; lambda(max) = 370 nm). The results for the mesityl compound are compared to the analogous ones from laser flash photolysis of the known Mes2Ge/6b precursor, hexamesitylcyclotrigermane. The spectra of the three germylenes and two of the digermenes are in excellent agreement with calculated spectra, derived from time-dependent DFT calculations. Absolute rate constants for dimerization of Ph2Ge and Mes2Ge and for their reaction with n-butylamine and acetic acid in hexane at 23 degrees C are also reported.

Intramolecular nucleophile-induced photorearrangements and silene formation from an o-(methoxymethyl)phenylsilacyclobutane.

Direct photolysis of 1-(o-(methoxymethyl)phenyl)-1-phenylsilacyclobutane yields three isomeric products attributed to intramolecular trapping of an initially formed silicon-carbon biradical intermediate by migration of the benzylic methoxy group to silicon, along with the (expected) intramolecularly ether-stabilized silene due to formal [2 + 2]-cycloreversion.

Stereospecific (Conrotatory) Photochemical Ring Opening of Alkylcyclobutenes in the Gas Phase and in Solution. Ring Opening from the Rydberg Excited State or by Hot Ground State Reaction?

The photochemistry of 1,2-dimethylcyclobutene and cis- and trans-1,2,3,4-tetramethylcyclobutene has been studied in the gas phase (1 atm; SF6 buffer) and in hydrocarbon solvents with 193-, 214-, and 228-nm light sources. The major products are the isomeric dienes from electrocyclic ring opening and 2-butyne + alkene (ethylene or E-/Z- 2-butene) due to formal [2+2]-cycloreversion. The total yields of dienes relative to 2-butyne are generally higher in the gas phase than in solution but decrease with increasing excitation wavelength under both sets of conditions. In the case of cis-1,2,3,4-tetramethylcyclobutene, 228-nm photolysis results in the stereospecific formation of E,Z-3,4-dimethyl-2,4-hexadiene[Formula: see text]the isomer corresponding to ring opening by the thermally allowed (conrotatory) electrocyclic pathway[Formula: see text]in both the gas phase and solution. All three diene isomers are obtained upon 228-nm photolysis of trans-1,2,3,4-tetramethylcyclobutene, but control experiments suggest that the thermally allowed isomers (E,E- and Z,Z-3,4-dimethyl-2,3-hexadiene) are probably the primary products in this case as well. The results are consistent with cycloreversion resulting from excitation of the low-lying π,R(3s) singlet state and with ring opening proceeding by at least two different mechanisms depending on excitation wavelength. The first, which dominates at short wavelengths, is thought to involve direct reaction of the second excited singlet (π,π*) state of the cyclobutene. The second mechanism, which dominates at long wavelengths, is proposed to ensue either directly from the lowest energy (Rydberg) state or from upper vibrational levels of the ground state, populated by internal conversion from this excited state.