Roles of mir155hg and TNF-α in evaluation of prognosis of patients with systemic lupus erythematosus.

Background: Systemic lupus erythematosus (SLE) is a chronic inflammatory autoimmune disease characterized by multi-organ multi-system inflammation, causing severe damage to various organs or systems. Recent studies have shown that miR-155 can affect the progression of Lupus Nephritis via regulating TNF-a. The present study aims to explore the roles of MIR155HG and TNF-a in the evaluation of prognosis of patients with SLE, so as to provide a basis for clinical work. Methods: A total of 130 patients with SLE admitted to our hospital were selected, were selected from June 2015 to December 2017., and the SLE disease activity index (SLEDAI) score was given. The expressions of MIR155HG and TNF-a were detected via quantitative reverse transcription-polymerase chain reaction (qRT-PCR), the incidence of complications during treatment was observed, and the associations of MIR155HG and TNF-a with SLEDAI before treatment and complications were analyzed. All patients were followed up after discharge, and the related factors to the prognosis of patients were analyzed via Cox regression analysis. Results: The levels of MIR155HG and TNF-a were higher in patients with an SLEDAI score of 10-14 points than those in patients with an SLEDAI score of 5-9 points and 0-4 points. MIR155HG and TNF-a were positively correlated with the incidence of infection, renal damage and cardiac damage (r=0.623, 0.533 and 0.621; r=0.431, 0.498 and 0.552) (P<0.05). Moreover, there was also a positive correlation (r=0.3398, P<0.001) between the expressions of serum MIR155HG and TNF-a in SLE patients. SLEDAI score ≥10 points, complications during hospitalization, and highly-expressed MIR155HG and TNFa were risk factors related to the prognosis of patients. Conclusions: MIR155HG and TNF-a affect the activity of SLE, and the high expressions of them promote the occurrence of such complications as infection, renal damage and cardiac damage, harming the prognosis.

Applicability of the generalized wind profile model over mountainous forests.

The analytical equation based on Monin-Obukhov (M-O) similarity theory (i.e., wind profile equation) has been adopted since 1970s for using in the prediction of wind vertical profile over flat terrains, which is mature and accurate. However, its applicability over complex terrains remains unknown. This applicability signifies the accuracy of the estimations of aerodynamic parameters for the boundary layer of non-flat terrain, such as zero-displacement height (d) and aerodynamic roughness length (z0), which will determine the accuracy of frequency correction and source area analysis in calculating carbon, water, and trace gas fluxes based on vorticity covariance method. Therefore, the validation of wind profile model in non-flat terrain is the first step to test whether the flux model needs improvement. We measured three-dimensional wind speed data by using the Ker Towers (three towers in a watershed) at Qingyuan Forest CERN in the Mountainous Region of east Liaoning Province, and compared them with data from Panjin Agricultural Station in the Liaohe Plain, to evaluate the applicability of a generalized wind profile model based on the Monin-Obukhov similarity theory on non-flat terrain. The results showed that the generalized wind profile model could not predict wind speeds accurately of three flux towers separately located in different sites, indicating that wind profile model was not suitable for predicting wind speeds in complex terrains. In the leaf-off and leaf-on periods, the coefficient of determination (R2) between observed and predicted wind speeds ranged from 0.12 to 0.30. Compared to measured values, the standard error of the predicted wind speeds was high up to 2 m·s-1. The predicted wind speeds were high as twice as field-measured wind speed, indicating substantial overestimation. Nevertheless, this model correctly predicted wind speeds in flat agricultural landscape in Panjin Agricultural Station. The R2 between observed wind speeds and predicted wind speed ranged from 0.90 to 0.93. The standard error between observed and predicted values was only 0.5 m·s-1. Results of the F-test showed that the root-mean-square error of the observed and predicted wind speeds in each secondary forest complex terrain was much greater than that in flat agricultural landscape. Terrain was the primary factor affecting the applicability of wind profile model, followed by seasonality (leaf or leafless canopy). The wind profile model was not applicable to the boundary-layer flows over forest canopies in complex terrains, because the d was underestimated or both the d and z0 were underestimated, resulting in inaccurate estimation of aerodynamic height.

[Application of CRISPR/Cas9 gene editing technology in edible fungi: a review].

The CRISPR/Cas9 gene editing system is a versatile technology for modifying gene, playing a crucial role in the study of functional genes and genetic breeding of plants, animals, fungi, and microorganisms. This review provides a comprehensive analysis of the application of this technology in gene research and genetic breeding of edible fungi. The review covers various aspects, including the delivery and expression strategies of Cas9 and sgRNA, genetic transformation methods, mutant screening, and repair strategies for target sites following DNA double-strand breaks. Additionally, the review summarizes the main challenges and optimization strategies associated with the application of this technology in edible fungi. Lastly, the future application potential of this technology in edible fungi research is discussed, drawing from the authors' personal research background.

Involvement of NAC transcription factor NaNAC29 in Alternaria alternata resistance and leaf senescence in Nicotiana attenuata.

NAC-LIKE, ACTIVATED BY AP3/PI (NAP) is a NAC transcription factor regulating leaf senescence in Arabidopsis thaliana. In wild tobacco Nicotiana attenuata, a nuclear localized NAC transcription factor NaNAC29 was identified to be highly elicited after inoculation of Alternaria alternata, a notorious necrotic fungus on tobacco species. The NaNAC29 possesses similar tertiary structure to NAP with 60% amino acid identity. However, it remains unknown the role of NaNAC29 in plant defense responses to A. alternata and leaf senescence in N. attenuata. In this paper, Defensin-like protein 1 (NaDLP1) was highly induced in N. attenuata after A. alternata inoculation and bigger lesions were developed in NaDLP1-silenced plants. Interestingly, A. alternata-induced NaDLP1 was reduced by 76% in VIGS NaNAC29 plants and by 61% in JA deficient irAOC plants at 3 days post inoculation. The regulation of NaDLP1 expression by NaNAC29 was clearly independent on JA pathway, since exogenous methyl jasmonate treatment could not complement the induction levels of NaDLP1 in NaNAC29-silenced plants to the levels in WT plants. Otherwise, the expression of NaNAC29 was low expressed in young leaves but highly in senescent leaves and dark-treated leaves. NaNAC29-silenced plants, which were generated by virus-induced gene silencing (VIGS NaNAC29), showed delayed senescence phenotype. In addition, constitutive over-expression of NaNAC29 in A. thaliana could rescue the delayed-senescence phenotype of nap and caused precocious leaf senescence of wild-type Col-0 plants. All the data above demonstrate that NaNAC29 is a NAP homolog in N. attenuata participating in the defense responses to A. alternata by regulation of a defensin protein NaDLP1 and promoting leaf senescence.

miR-125a inhibits the migration and invasion of liver cancer cells via suppression of the PI3K/AKT/mTOR signaling pathway.

In order to explore the regulation of the invasive ability of hepatocellular carcinoma cells and the underlying mechanism, mimics sequences of microRNA (miR)-125a (miR-125a-3p/5p) and scramble sequences (miR-125a-3p-s/5p-s) were transfected into human hepatocellular carcinoma cell lines, HCC-LM3 and HepG2, and the non-malignant epithelioid hepatic cell line QZG. To inhibit and upregulate the expression of miR-125a individually. Protein expression was detected by western blotting, and the cell proliferation and migration abilities were evaluated by soft agar colony formation and Transwell assay, respectively. It was revealed that the expression of miR-125a was downregulated in HepG2 and HCC-LM3 cells compared with that of QZG cells, and expression was markedly lower in HCC-LM3 cells than that in HepG2 cells (P<0.01). The colony formation and migration rates of the cells transfected with miR-125a-3p/5p were decreased compared with negative controls, but were increased in cells transfected with miR-125a-3p-3/5p-s (P<0.01). The protein and messenger RNA expression of phosphoinositide 3-kinase (PI3K)/AKT/mammalian target of rapamycin (mTOR) was decreased following transfection with miR-125a-5p, whereas expression was increased compared with negative controls following transfection with miR-125a-5p-s (P<0.01). Furthermore, the proliferation and migration abilities of cells were attenuated following inhibition of the PI3K/AKT/mTOR pathway by LY294002. The results of the present study indicated that miR-125a inhibits the invasive ability of hepatocellular carcinoma cells via regulation of the PI3K/AKT/mTOR pathway.

[Effects of dynamic aerodynamic parameters on simulating the land-atmosphere flux exchange in maize field: a case study of BATS1e model].

Based on the continuous observations on the land-atmosphere flux exchange and the meteorological and biological elements in a maize field at the Jinzhou Agricultural Ecosystem Research Station in Liaoning Province of Northeast China from 2006 to 2008, and by using the dynamic roughness (z0) and zero-displacement (d) parameterization scheme considering the effects of leaf area index, canopy height and wind speed at different developmental stages of maize, the BATS1e model was modified, and applied to investigate the effects of dynamic aerodynamic parameters on the flux exchange between maize agroecosystem and atmosphere. Compared with the original model, the drag coefficient (C(D)) simulated by the modified model increased, and its diurnal variation was more obvious with increasing vegetation coverage, which was more accordant with practical circumstances. The simulation accuracies of sensible heat (H), latent heat (lambdaE) and soil heat flux were improved in varying degree, and the Nash-Sutcliffes (NSs) were increased by 0.0569, 0.0194 and 0. 0384, with the improvement quantities in the growth season being 0.9%, 1.1% and 1.2% of global radiation, respectively. The dynamic parameterizations of z0 and d played a more remarkable role to increase the simulation accuracies of H and lambdaE with the actual observation of soil water content introduced into the improved model. This research proved that more reasonable dynamic aerodynamic parameterizations could fulfill an obvious function to improve the land surface processes simulation.

A temperature-precipitation based leafing model and its application in Northeast China.

Plant phenology models, especially leafing models, play critical roles in evaluating the impact of climate change on the primary production of temperate plants. Existing models based on temperature alone could not accurately simulate plant leafing in arid and semi-arid regions. The objective of the present study was to test the suitability of the existing temperature-based leafing models in arid and semi-arid regions, and to develop a temperature-precipitation based leafing model (TP), based on the long-term (i.e., 12-27 years) ground leafing observation data and meteorological data in Northeast China. The better simulation of leafing for all the plant species in Northeast China was given by TP with the fixed starting date (TPn) than with the parameterized starting date (TPm), which gave the smallest average root mean square error (RMSE) of 4.21 days. Tree leafing models were validated with independent data, and the coefficient of determination (R(2)) was greater than 0.60 in 75% of the estimates by TP and the spring warming model (SW) with the fixed starting date. The average RMSE of herb leafing simulated by TPn was 5.03 days, much lower than other models (>9.51 days), while the average R(2) of TPn and TPm were 0.68 and 0.57, respectively, much higher than the other models (<0.22). It indicates that TPn is a universal model and more suitable for simulating leafing of trees and herbs than the prior models. Furthermore, water is an important factor determining herb leafing in arid and semi-arid temperate regions.

Biogas production from anaerobic co-digestion of food waste with dairy manure in a two-phase digestion system.

Co-digestion of food waste and dairy manure in a two-phase digestion system was conducted in laboratory scale. Four influents of R0, R1, R2, and R3 were tested, which were made by mixing food waste with dairy manure at different ratios of 0:1, 1:1, 3:1, and 6:1, respectively. For each influent, three runs of experiments were performed with the same overall hydraulic retention time (HRT) of 13 days but different HRT for acidification (1, 2, and 3 days) and methanogenesis (12, 11, and 10 days) in two-phase digesters. The results showed that the gas production rate (GPR) of co-digestion of food waste with dairy manure was enhanced by 0.8-5.5 times as compared to the digestion with dairy manure alone. Appropriate HRT for acidification was mainly determined by the biodegradability of the substrate digested. Three-, 2-, and 1-day HRT for acidification were found to be optimal for the digestion of R0, R1, and R2/R3, respectively, when overall HRT of 13 days was used. The highest GPR of 3.97 L/L.day was achieved for R3(6:1) in Run 1 (1 + 12 days), therefore, the mixing ratio of 6:1 and HRT of 1 day for acidification were considered to be the optimal ones and thus recommended for co-digestion of food waste and dairy manure. There were close correlations between degradation of organic matters and GPR. The highest VS removal rate was achieved at the same HRT for acidification and mixing ratio of food waste and dairy manure as GPR in the co-digestion. The two-phase digestion system showed good stability, which was mainly attributed to the strong buffering capacity with two-phase system and the high alkalinity from dairy manure when co-digested with food waste.

Expression of IL-1alpha, IL-6, TGF-beta, FasL and ZNF265 during sertoli cell infection by ureaplasma urealyticum.

To investigate immunoregulatory mechanisms of Sertoli cells in the testis in vitro and in vivo, we utilized our well-characterized Ureaplasma Urealyticum (UU)-induced model. We investigated the expressions of IL-1alpha, IL-6, TGF-beta, FasL and ZNF265 at the first, second and third weeks post-infection. During recovery from inflammation and with the help of negative regulators TGF-beta and FasL, the high levels of IL-1alpha and IL-6 expressions were observed in the early stages of the infection, and decreased gradually in the later weeks both in vitro and in vivo. The trend of varied expression of ZNF265 was similar to those of TGF-beta and FasL in vitro and in vivo for Sertoli cells infected with UU.

GISCOD: general integrated solid waste co-digestion model.

This paper views waste as a resource and anaerobic digestion (AD) as an established biological process for waste treatment, methane production and energy generation. A powerful simulation tool was developed for the optimization and the assessment of co-digestion of any combination of solid waste streams. Optimization was aimed to determine the optimal ratio between different waste streams and hydraulic retention time by changing the digester feed rates to maximize the biogas production rate. Different model nodes based on the ADM1 were integrated and implemented on the Matlab-Simulink simulation platform. Transformer model nodes were developed to generate detailed input for ADM1, estimating the particulate waste fractions of carbohydrates, proteins, lipids and inerts. Hydrolysis nodes were modeled separately for each waste stream. The fluxes from the hydrolysis nodes were combined and generated a detailed input vector to the ADM1. The integrated model was applied to a co-digestion case study of diluted dairy manure and kitchen wastes. The integrated model demonstrated reliable results in terms of calibration and optimization of this case study. The hydrolysis kinetics were calibrated for each waste fraction, and led to accurate simulation results of the process and prediction of the biogas production. The optimization simulated 200,000 days of virtual experimental time in 8 h and determined the feedstock ratio and retention time to set the digester operation for maximum biogas production rate.

[Establishment of a 5-DFUR-resistant human hepatocellular carcinoma cell model and preliminary study of the mechanisms of the drug resistance].

OBJECTIVE: To establish a multidrug-resistant hepatocellular carcinoma cell line BEL-7402/5-deoxy-5-fluorouridine (5'-DFUR) and study the mechanisms of the drug resistance. METHODS: BEL-7402/5'-DFUR cell line was induced by pulse therapy combined with continuous stepwise exposure to 5'-DFUR in vitro. The multidrug resistance of BEL-7402/5'-DFUR cell line to the antitumor agents was evaluated by MTT assay. The distribution of the cell cycle, the expressions of P-gp, bcl-2 and GST-pi were detected by flow cytometry. RESULTS: The established BEL-7402/5'-DFUR cell line was resistant to multiple antitumor agents, with IC(50) of 5'-DFUR 12.9 times higher than that of the parental cell line 7204. The BEL-7402/5'-DFUR cells in S phase decreased while those in G(1) and G(2) phase increased, with significantly increased expressions of P-gp and bcl-2 but stable expression of GST-pi. CONCLUSION: Compared with its parent cell line BEL-7402, the multidrug resistant cell line BEL-7402/5'-DFUR has a 12.9-fold increase in IC(50) of 5'-DFUR with decreased drug accumulation and altered cell cycle distribution. The multi-drug resistance of this cell line is closely related to the overexpression of P-gp and bcl-2.

[Research advances in plant phenology].

Plant phenology can directly reflect the effects of climate change, and is the key for vegetation dynamics modeling. With the development of remote sensing and modeling techniques, the relationships between plant phenology and global climate change have been increasingly concerned by scientists. From the aspects of the relationships between plant phenology and environmental factors, the responses of plant phenology to global change, and the remote sensing monitoring of plant phenology, this paper reviewed the research advances in plant phenology, with the shortages of plant phenology research and the trends for future research put forward.

[Soil seed bank in Keerqin meadow grassland under grazing and harvesting].

This study on the size and composition of seed bank and its relationship with vegetation showed in Keerqin meadow grassland, the density of soil seed bank was 6158 +/- 1647 grains x m(-2) under grazing and 8312 +/- 2540 grains m(-2) under harvesting. Under grazing, the seed bank was mainly composed of some dwarf and short-life annuals. The seeds of the annuals and biennials accounted for 81.66% of the seeds in seed bank. The four species with largest proportion of seed bank were Chloris virgata, Chenopodium glaucum, Digitaria cilliaris and Setaria viridis, and the proportions were 38.55%, 15.42%, 14.95%, and 9.83%, respectively. The density of perennials in soil seed bank was 1129 +/- 302 grains x m(-2). Under harvesting, the seeds of annuals and biennials accounted for 68.08% of the seed in seed bank, and the proportion of Setaria viridis was 52.7%. In the harvesting meadow grassland, the seed density of perennials was 2653 +/- 811 grains x m(-2). There was no significant correlation between the seed density in soil and the vegetation under grazing, but a significant correlation between the seed density in soil and the species abundance of vegetation under harvesting (r = 0.76, P < 0.01). The index of Shannon-Wiener and richness of grazing meadow grassland were 2.96 and 2.98, respectively, distinctly smaller than 3.10 and 5.09 of harvesting meadow, which showed that free grazing made the diversity of seed bank decrease easily.

[Effects of sand-burying on seed germination and seedling emergence of six psammophytes species].

This paper studied the effects of sand-burying on the seed germination and seedling emergence of six dominance plants in Keerqin Sandy Land. Six treatments of artificially sand-burying to depths 0, 2, 4, 6, 8, 10 and 12 cm were designed. The results showed that the seed germination of Agriophyllum squarrosum was significantly different (P < 0.05) between different treatments, but that of Artemesia halodendron was only significantly different (P< 0.05) between 2 cm and other burial depths. For other four plants, their seed germination was significantly different (P < 0.05) only between 0 cm and other burial depths. Sand-burying significantly affected the seedling emergence of all plant species. The emergence rate decreased with increasing burial depth. Higher emergence percentages were obtained at 2 and 4 cm burial depths. The species with larger seeds emerged from deeper depth, and the maximum burial depth of seedling emergence was Sophora flavescdens > Atraphaxis manshurica > or = Agriophyllum squarrosum > Hedysarum fruticosum > Bassia dasyphylla > Artemesia halodendron.

[A comparative study on mucilaginous diaspores of four plant species].

A comparative study was conducted on the mucilaginous diaspores of Thymus serpyllum, Plantago depressa, Plantago maritima, and Linum stelleroides. The mucilage amount was estimated by the sand-holding capacity of seed under soaking and watering conditions. Soaking and watering experiments each had 4 treatments. The results indicated that under different soaking time treatments, the mucilage amount of Linum stelleroides and Plantago depressa was of nonsignificant difference, but that of Plantago maritima and Thymus serpyllum was increased with prolonged soaking-time. Under different watering treatments, the mucilage amount of the 4 plant species all had an increasing trend along with the increased water volume. After soaking for 80 min, the weight of sand-holding seed of Plantago maritima was 60 times more than its seed weight, Plantago depressa was 10 times, and Thymus serpyllum and Linum stelleroides was 4-6 times. After watering with 8 mm rainfall, the weight of sand-holding seed of Plantago maritima was 20 times more than its seed weight, Plantago depressa was 6-10 times, and Thymus serpyllum and Linum stelleroides was 2-7 times. In averaging various treatments, the percentage of the sand-holding seed to the total seed of Linum stelleroides, Thymus serpyllum, Plantago depressa and Plantago maritima was 67.7%, 94.5%, 97.7% and 99.5%, respectively.

[Non-myeloablative allogeneic stem cell transplantation in patients with hematologic malignancies].

In order to investigate the clinical efficacy of non-myeloablative allogeneic stem cell transplantation (allo-NST) and related technology in patients with hematologic malignancies, twenty-six cases of hematological malignancies (10 AL, 14 CML, 2 MM patients) received NST following conditioning regimens with fludara + cyclophosphamide + ATG (14 cases) and busulfan or melphalan + cyclophosphamide + ATG (12 cases), G-CSF (600 micro g/d) or G-CSF (300 micro g/d) + GM-CSF (300 micro g/d) were used for mobilizing peripheral blood stem cell. A combination of cyclosporine A (CsA) and methotrexate (MTX) was administered for GVHD prophylaxis. Patients will be eligible for donor lymphocyte infusion (DLI) or donor stem cell infusion (DSI) given in graded increments according to the chimeric formation and clinical reaction. Generally the dose of the first infusion was 1 x 10(7)/kg at 4th week post-transplantation. The engraftment analysis included the detection of microsatellite short tandem repeats (STRs), Bcr/Abl fusion gene, Philadelphia chromosome, HLA-locus analysis, sex chromosome and ABO blood type or blood subtype. The results showed that 22 patients (84.62%) were engrafted, among which 18 patients were full donor chimerism (FDC) up to now. Acute GVHD occurred in 3/26 cases (11.54%). Chronic GVHD was diagnosed in 6 of 26 (23.07%) evaluable patients. The incidence of infection and hemorrhage was low and slight. It is concluded that allo-NST is a safe and effective therapeutic method for hematologic malignancies, but the related technology such as selection of indication, conditioning regimen and transplantation immunotherapy should be studied further.

[A comparative study on seed germination of 15 grass species in Keeqin Sandyland].

A laboratory study was made on the germination characteristics of freshly-collected seeds of grass species at the Wulanaodu area of Keeqin Sandyland in Eastern Inner-Mongolia. Of the 15 species examined, 8 species including Clinelymus dahuricus, Cleistogenes squarrosa, Pappophorum boreale, Spodiopogon sibiricus, Phragmites communis, Chloris virgata, Arundinella hirta, Pennisetum alopecuroides had a germination rate of over 80%, but 4 species including Echinochloa hispidula, Hemarthria compressa, Tragus berteronianus and Setaria viridis had a value of less than 10%. Spodiopogon sibiricus, Eragrostis pilosa, Phragmites communis, Chloris virgata, Clinelymus dahuricus, Pappophorum boreale, Digitaria cilliaris and Cleistogenes squrrosa began to germinate within 1-3 days after the test began, while Setaria viridis, Tragus berteronianus and Hemarthria compressa failed to germinate in a period of more than 10 days. For the species such as Digitaria cilliaris, Echinochloa hispidula, Phragmites communis, Eragrostis pilosa and Spodiopogon sibiricus, their germination period was less than 10 days, while Clinelymus dahuricus and Pappophorum boreale had a germination period of more than 20 days. The days required for half the final germination rate to be reached were: 2 days for Chloris virgata, 3 days for Phragmites communis, 4 days for Spodiopogon sibiricus, 5 days for Clinelymus dahuricus and Cleistogenes squarrosa, 7 days for Arundinella hirta and Pappophorum boreale, and 10 days for Pennisetum alopecuriodes. Compared with the Sheffield region in Britain, the Wulanaodu area of Kerqin Sandyland had a higher proportion of annul grasses with a low germination rate and a longer germination period, and the perennial grasses at the Wulanaodu area had an approximately same germination rate, but a longer germination period. During germination, ruderals showed the potential for risk-sharring, and thus, they had a relatively higher disturbance-resistance capacity.