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The water quality evolution of surface and groundwater caused by mining activities and mine drainage is a grave public concern worldwide. To explore the effect of mine drainage on sulfate evolution, a multi-aquifer system in a typical coal mine in Northwest China was investigated using multi-isotopes (δ34SSO4, δ18OSO4, δD, and δ18Owater) and Positive Matrix Factorization (PMF) model. Before mining, the Jurassic aquifer was dominated by gypsum dissolution, accompanied by cation exchange and bacterial sulfate reduction, and the phreatic aquifers and surface water were dominated by carbonate dissolution. Significant increase in sulfate in phreatic aquifers due to mine drainage during the early stages of coal mining. However, in contrast to common mining activities that result in sulfate contamination from pyrite oxidation, mine drainage in this mining area resulted in accelerated groundwater flow and enhanced hydraulic connections between the phreatic and confined aquifers. Dilution caused by the altered groundwater flow system controlled the evolution of sulphate, leading to different degrees of sulfate decrease in all aquifers and surface water. As the hydrogeochemical characteristic of Jurassic aquifer evolved toward phreatic aquifer, this factor should be considered to avoid misjudgment in determining the source of mine water intrusion. The study reveals the hydrogeochemical evolution induced by mine drainage, which could benefit to the management of groundwater resources in mining areas.
Assuntos
Monitoramento Ambiental , Água Subterrânea , Sulfatos , Poluentes Químicos da Água , Água Subterrânea/química , Sulfatos/análise , Poluentes Químicos da Água/análise , China , Minas de Carvão , Movimentos da Água , MineraçãoRESUMO
The origin and evolution of groundwater in the Urangulan River basin area under growing concern as its situated in an economically and ecologically crucial area of China. In the present study, a combination of different methods (i.e. self-organizing maps (SOM), piper diagrams, ionic ratios, multiple isotopic analyses and Bayesian isotope mixing model) provided an efficient way for analysing groundwater origin and evolution. The hydrochemical type was found to be Ca-HCO3 in low TDS and Na + K-Cl or Na + K-SO4 in high TDS groundwater. According to the δ2H and δ18Owater values, groundwater in the study area mainly originated from atmospheric precipitation and was influenced by evaporation. In addition, the rock weathering in conjunction with the cation exchange completely dominated the geochemical evolution process. The dual SO42- isotope and Bayesian isotope mixing model showed that gypsum dissolution, fertilizer input and sewage input were the main sources of SO42- in the study area, accounting for an average of 30.2 %, 28.5 %, and 17.3 % of SO42- in the groundwater, respectively. Other than water-rock interactions, human activity (mining and irrigation) distributed throughout the study area in combination with the spatial characteristics was the dominant factor controlling the hydrochemical evolution. The results of this study provided a basis for understanding groundwater origin and evolution while facilitating the effective management and utilization of groundwater.
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The spatial distribution of mine water quality and geochemical controls must be investigated for water safety and ecosystem protection in Shaanxi-Inner Mongolian Coal Mine Base (SICMB). Based on 122 mine water samples collected from 14 mining areas, self-organizing maps (SOM) combining with principal component analysis (PCA) derived that the mine water samples were classified into seven clusters. Clusters 1 and 3 (C1 and C3) samples were dominant by HCO3-Ca and mixed types, which were distributed in the recharge area of the middle SICMB. In this area, the active groundwater circulation contributed to the good water quality. Cluster 2 (C2) samples were characterized by HCO3-Na type, mainly distributed in the discharge area of the middle SICMB. These samples were threatened by heavy fluorine contamination and high residual sodium carbonate (RSC) because of slow groundwater flow in this area. Clusters 4 and 5 (C4 and C5) samples, distributed in the northeast and middle SICMB, were characterized by high Cl- concentration and light fluorine contamination. They were influenced by anthropogenic input through faults or underground mining. In contrast, Clusters 6 and 7 (C6 and C7) samples with high salinity and sulfate were distributed in the southwest SICMB. The deep groundwater circulation enhanced water-rock interaction and contributed to poor water quality. These findings are beneficial to the management of mine water resources in the SICMB and provide an insight to investigate the mine water quality in large spatial scale.
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Groundwater is the primary water source in coalfields under arid and semiarid climates. However, the problem of excessive concentrations of sulfate, which is a constant component in coalfields, and its potential health risks are often neglected in Northwest, China. To determine the groundwater quality, health threats, and driving forces of sulfate in coal mine groundwater, this study performed hydrochemical and isotopic analyses of 61 groundwater samples from a typical coalfield in northwestern China. We found that phreatic groundwater had lower total dissolved solid (TDS) and freshwater hydrochemical types (mainly Ca-HCO3 and Ca-Na + K-HCO3 types). In contrast, confined groundwater showed saline affinity (Na + K-SO4 type) and high TDS values, and the quality was unacceptable for drinking, with EWQI values larger than 100, which could be attributed to its high SO42- concentration. In addition, confined groundwater was also unsuitable for irrigation with high values of electric conductivity (EC), sodium absorption ratio (SAR), and Na%. Combining with isotopic analysis (δD, δ18Owater, δ34S and δ18Osulfate), the sulfate of confined and phreatic groundwater was controlled by gypsum dissolution and irrigation activities. As for public human health, SO42- poses potential non-carcinogenic risks to various populations, especially children. Therefore, the impact of geogenic and anthropogenic factors should be paid attention to, including the reduction of the use of sulfur-containing fertilizers and discharge of sulfur-containing sewage; and the water treatment should be carried out. Importantly, there is a need to adopt a strategy of water supply from multiple sources to ensure human health.
Assuntos
Água Subterrânea , Poluentes Químicos da Água , Criança , China , Monitoramento Ambiental , Humanos , Sulfatos/análise , Enxofre/análise , Óxidos de Enxofre , Poluentes Químicos da Água/análise , Qualidade da ÁguaRESUMO
In heterogeneous wireless networks, random packet loss and high latency lead to conventional TCP variants performing unsatisfactorily in the case of competing communications. Especially on high-latency wireless links, conventional TCP variants are unable to estimate congestion degrees accurately for fine-grained congestion control because of the effects of random packet loss and delay oscillations. This paper proposes a TCP variant at the sender side to identify congestion degrees, namely TCP-WBQ, which quickly responses to the real congestion and effectively shields against random packet loss and oscillations of latency time. The proposed algorithm of congestion control firstly constructs a backlog-queue model based on the dynamics of the congestion window, and deduces the two bounds of the model which delimit oscillations of the backlog queue for non-congestion and random packet loss respectively. TCP-WBQ detects congestion degrees more accurately and thus implements the corresponding schemes of adjusting the congestion window, maintaining a tradeoff between high throughputs and congestion avoidance. The comprehensive simulations show that TCP-WBQ works efficiently in bandwidth utilization with single and multiple bottleneck scenarios, and achieves high performance and competitive fairness in heterogeneous wireless networks.
Assuntos
Redes de Comunicação de Computadores , Software , Algoritmos , Comunicação , Simulação por ComputadorRESUMO
OBJECTIVES: To investigate the effects of environmental tobacco smoke (ETS) on the inflammatory process of periodontitis by evaluating bone loss and the expression of cyclooxygenase-2 (COX-2) and Src homology phosphotyrosine phosphatase 2 (SHP-2). MATERIALS AND METHODS: Eighty 6-month-old male SD rats were randomized into four groups (10 rats/group/per time point): (a) normal group, (b) ETS group, (c) ligature-induced periodontitis group, and (d) ligature-induced periodontitis + ETS group. After treatment with ligature and/or ETS for 8 and 12 weeks, the levels of alveolar bone resorption and the expressions of COX-2 and SHP-2 in periodontal tissue were analyzed using histology and immunohistochemistry. RESULTS: The ligature-induced periodontitis group displayed increased bone resorption and elevated expression of COX-2 and SHP-2 in periodontal tissues compared to the normal and ETS groups at 8 and 12 weeks. Furthermore, bone resorption and COX-2 and SHP-2 levels in the ligature-induced periodontitis + ETS group were significantly increased compared to those in the normal and ligature-induced periodontitis groups at both 8 and 12 weeks. CONCLUSION: Environmental tobacco smoke increased alveolar bone loss in periodontitis with enhanced expression of COX-2 and SHP-2 in periodontal tissues. Further investigation is needed to explore the role of COX-2 and SHP-2 in ETS-associated periodontitis.
Assuntos
Perda do Osso Alveolar , Periodontite , Poluição por Fumaça de Tabaco , Perda do Osso Alveolar/etiologia , Animais , Ciclo-Oxigenase 2 , Masculino , Proteínas Tirosina Fosfatases , Ratos , Ratos Sprague-Dawley , Poluição por Fumaça de Tabaco/efeitos adversosRESUMO
Metal ions are important for many biological processes and are steadily available in the human body. Metal concentrations can be extremely high in diseased areas of various pathological conditions. Some synthetic and natural drugs need to be activated by metal ions as prodrugs. In this review, we provide a few examples to illustrate how metal ions activate and mediate drug targeting in the body. This knowledge may be helpful for the development of more effective drugs and pharmaceutical formulations.
Assuntos
Metais/química , Pró-Fármacos/química , Anti-Inflamatórios não Esteroides/química , Anti-Inflamatórios não Esteroides/metabolismo , Benzilaminas , Bleomicina/química , Bleomicina/metabolismo , Ciclamos , DNA/química , DNA/metabolismo , Desenho de Fármacos , Duocarmicinas , Compostos Heterocíclicos/química , Compostos Heterocíclicos/metabolismo , Humanos , Indóis/química , Indóis/metabolismo , Íons/química , Metais/metabolismo , Organofosfonatos/química , Organofosfonatos/metabolismo , Pró-Fármacos/síntese química , Pirrolidinonas/química , Pirrolidinonas/metabolismoRESUMO
The greater activity of MMP-12 than MMP-3 toward substrates from protein fibrils has been quantified. Why is MMP-12 the more active protease? We looked for behaviors associated with the higher activity of MMP-12 than MMP-3, using nuclear magnetic resonance to monitor backbone dynamics and residue-specific stabilities of their catalytic domain. The proteolytic activities are likely to play important roles in inflammatory diseases of arteries, lungs, joints, and intestines. Nuclear magnetic resonance line broadening indicates that regions surrounding the active sites of both proteases sample conformational substates within milliseconds. The more extensive line broadening in MMP-3 suggests greater sampling of conformational substates, affecting the full length of helix B and beta-strand IV forming the active site, and more remote sites. This could suggest more excursions to functionally incompetent substates. MMP-3 also has enhanced subnanosecond fluctuations in helix A, in the beta-hairpin of strands IV and V, and before and including helix C. Hydrogen exchange protection in the EX2 regime suggests that MMP-3 possesses 2.8 kcal/mol higher folding stability than MMP-12(E219A). The beta-sheet of MMP-3 appears to be stabilized still more. The higher stability of MMP-3 relative to MMP-12 coincides with the former's considerably lower proteolytic activity. This relationship is consistent with the hypothesis that enzymes often trade stability for higher activity.
Assuntos
Metaloproteinase 12 da Matriz/química , Metaloproteinase 12 da Matriz/metabolismo , Metaloproteinase 3 da Matriz/química , Metaloproteinase 3 da Matriz/metabolismo , Domínio Catalítico , Medição da Troca de Deutério , Estabilidade Enzimática , Humanos , Cinética , Metaloproteinase 12 da Matriz/genética , Metaloproteinase 3 da Matriz/genética , Modelos Moleculares , Movimento , MutaçãoRESUMO
[Structure: see text]. FHA domains are protein modules that switch signals in diverse biological pathways by monitoring the phosphorylation of threonine residues of target proteins. As part of the effort to gain insight into cellular avoidance of cancer, FHA domains involved in the cellular response to DNA damage have been especially well-characterized. The complete protein where the FHA domain resides and the interaction partners determine the nature of the signaling. Thus, a key biochemical question is how do FHA domains pick out their partners from among thousands of alternatives in the cell? This Account discusses the structure, affinity, and specificity of FHA domains and the formation of their functional structure. Although FHA domains share sequence identity at only five loop residues, they all fold into a beta-sandwich of two beta-sheets. The conserved arginine and serine of the recognition loops recognize the phosphorylation of the threonine targeted. Side chains emanating from loops that join beta-strand 4 with 5, 6 with 7, or 10 with 11 make specific contacts with amino acids of the ligand that tailor sequence preferences. Many FHA domains choose a partner in extended conformation, somewhat according to the residue three after the phosphothreonine in sequence (pT + 3 position). One group of FHA domains chooses a short carboxylate-containing side chain at pT + 3. Another group chooses a long, branched aliphatic side chain. A third group prefers other hydrophobic or uncharged polar side chains at pT + 3. However, another FHA domain instead chooses on the basis of pT - 2, pT - 3, and pT + 1 positions. An FHA domain from a marker of human cancer instead chooses a much longer protein fragment that adds a beta-strand to its beta-sheet and that presents hydrophobic residues from a novel helix to the usual recognition surface. This novel recognition site and more remote sites for the binding of other types of protein partners were predicted for the entire family of FHA domains by a bioinformatics approach. The phosphopeptide-dependent dynamics of an FHA domain, SH2 domain, and PTB domain suggest a common theme: rigid, preformed binding surfaces support van der Waals contacts that provide favorable binding enthalpy. Despite the lack of pronounced conformational changes in FHA domains linked to binding events, more subtle adjustments may be possible. In the one FHA domain tested, phosphothreonine peptide binding is accompanied by increased flexibility just outside the binding site and increased rigidity across the beta-sandwich. The folding of the same FHA domain progresses through near-native intermediates that stabilize the recognition loops in the center of the phosphoprotein-binding surface; this may promote rigidity in the interface and affinity for targets phosphorylated on threonine.
Assuntos
Peptídeos e Proteínas de Sinalização Intracelular/química , Peptídeos e Proteínas de Sinalização Intracelular/metabolismo , Fosfoproteínas/metabolismo , Sequência de Aminoácidos , Animais , Sítios de Ligação , Humanos , Dados de Sequência Molecular , Fosfotreonina/química , Fosfotreonina/metabolismo , Estrutura Terciária de Proteína , Especificidade por SubstratoRESUMO
In this review, the author discusses recent advances in anti-HIV inhibitors, targeting CXCR4, including natural and modified chemokines, peptides and organic compounds, their mechanisms of action, and the molecular process of virus invasion of immune cells. Peptides with strong anti-HIV activity exhibit several common features, such as electrostatic charges, cyclization, beta-turns and dimerization induced by a sulphide bond. Organic compounds, such as cyclams, display a unique metal-mediated mechanism in the binding process to its target CXCR4. Understanding of their mechanisms of action may be useful for the design of more effective drugs. Consecutive interactions of viral glycoprotein gp120 with CD4 and the co-receptor, CXCR4 or another co-receptor CCR5 on the cell surface leads to virus invasion into host cells. The molecular details of the binding between HIV glycoproteins and the co-receptors also provide a basis for anti-HIV therapy.
Assuntos
Receptores CXCR4/antagonistas & inibidores , Animais , Quimiocinas/metabolismo , Infecções por HIV/imunologia , Infecções por HIV/metabolismo , Humanos , Modelos Biológicos , Ligação Proteica , Receptores CXCR4/imunologia , Receptores CXCR4/metabolismoRESUMO
Macrophage metalloelastase or matrix metalloproteinase-12 (MMP-12) appears to exacerbate atherosclerosis, emphysema, aortic aneurysm, rheumatoid arthritis, and inflammatory bowel disease. An inactivating E219A mutation, validated by crystallography and NMR spectra, prevents autolysis of MMP-12 and allows us to determine its NMR structure without an inhibitor. The structural ensemble of the catalytic domain without an inhibitor is based on 2813 nuclear Overhauser effects (NOEs) and has an average RMSD to the mean structure of 0.25 A for the backbone and 0.61 A for all heavy atoms for residues Trp109-Gly263. Compared to crystal structures of MMP-12, helix B (hB) at the active site is unexpectedly more deeply recessed under the beta-sheet. This opens a pocket between hB and beta-strand IV in the active-site cleft. Both hB and an internal cavity are shifted toward beta-strand I, beta-strand III, and helix A on the back side of the protease. About 25 internal NOE contacts distinguish the inhibitor-free solution structure and indicate hB's greater depth and proximity to the sheet and helix A. Line broadening and multiplicity of amide proton NMR peaks from hB are consistent with hB undergoing a slow conformational exchange among subtly different environments. Inhibitor-binding-induced perturbations of the NMR spectra of MMP-1 and MMP-3 map to similar locations across MMP-12 and encompass the internal conformational adjustments. Evolutionary trace analysis suggests a functionally important network of residues that encompasses most of the locations adjusting in conformation, including 18 residues with NOE contacts unique to inhibitor-free MMP-12. The conformational change, sequence analysis, and inhibitor perturbations of NMR spectra agree on the network they identify between structural scaffold and the active site of MMPs.
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Metaloproteinase 12 da Matriz/química , Domínio Catalítico , Cristalografia , Humanos , Ressonância Magnética Nuclear Biomolecular , Conformação ProteicaRESUMO
In this critical review we discuss recent advances in understanding the modes of interaction of metal ions with membrane proteins, including channels, pumps, transporters, ATP-binding cassette proteins, G-protein coupled receptors, kinases and respiratory enzymes. Such knowledge provides a basis for elucidating the mechanism of action of some classes of metallodrugs, and a stimulus for the further exploration of the coordination chemistry of metal ions in membranes. Such research offers promise for the discovery of new drugs with unusual modes of action. The article will be of interest to bioinorganic chemists, chemical biologists, biochemists, pharmacologists and medicinal chemists. (247 references).
Assuntos
Membranas/química , Metais/química , Animais , Proteínas de Transporte/química , Enzimas/química , Enzimas/metabolismo , Humanos , Canais Iônicos/química , Bombas de Íon , Membranas/enzimologia , Membranas/metabolismo , Metais/metabolismo , Receptores Acoplados a Proteínas G/metabolismoRESUMO
FHA domains are phosphoThr recognition modules found in diverse signaling proteins, including kinase-associated protein phosphatase (KAPP) from Arabidopsis thaliana. The kinase-interacting FHA domain (KI-FHA) of KAPP targets it to function as a negative regulator of some receptor-like kinase (RLK) signaling pathways important in plant development and environmental responses. To aid in the identification of potential binding sites for the KI-FHA domain, we predicted (i) the structure of a representative KAPP-binding RLK, CLAVATA1, and (ii) the functional surfaces of RLK kinase domains using evolutionary trace analysis. We selected phosphopeptides from KAPP-binding Arabidopsis RLKs for in vitro studies of association with KI-FHA from KAPP. Three phosphoThr peptide fragments from the kinase domain of CLV1 or BAK1 were found to bind KI-FHA with KD values of 8-20 microM, by NMR or titration calorimetry. Their affinity is driven by favorable enthalpy and solvation entropy gain. Mutagenesis of these three threonine sites suggests Thr546 in the C-lobe of the BAK1 kinase domain to be a principal but not sole site of KI-FHA binding in vitro. The brassinosteroid receptor BRI1 and KAPP are shown to associate in vivo and in vitro. Further genetic studies indicate that KAPP may be a negative regulator of the BRI1 signaling transduction pathway. 15N-Labeled KI-FHA was titrated with the GST-BRI1 kinase domain and monitored by NMR. BRI1 interacts with the same 3/4, 4/5, 6/7, 8/9, and 10/11 recognition loops of KI-FHA, with similar affinity as the phosphoThr peptides.
Assuntos
Proteínas de Arabidopsis/metabolismo , Arabidopsis/enzimologia , Fosfopeptídeos/metabolismo , Fosfoproteínas Fosfatases/metabolismo , Fosfoproteínas/metabolismo , Estrutura Terciária de Proteína/fisiologia , Proteínas de Arabidopsis/química , Sítios de Ligação , Proteínas de Membrana , Modelos Moleculares , Fosfoproteínas Fosfatases/química , Proteínas Quinases/metabolismo , Transdução de Sinais/efeitos dos fármacos , Transdução de Sinais/fisiologia , Treonina/metabolismoRESUMO
FHA domains adopt a beta-sandwich fold with 11 strands. The first evidence of partially unfolded forms of a beta-sandwich is derived from native-state hydrogen exchange (NHX) of the forkhead-associated (FHA) domain from kinase-associated protein phosphatase from Arabidopsis. The folding kinetics of this FHA domain indicate that EX2 behavior prevails at pH 6.3. In the chevron plot, rollover in the folding arm and bends in the unfolding arm suggest folding intermediates. NHX of this FHA domain suggests a core of six most stable beta-strands and two loops, characterized by rare global unfolding events. Flanking this stable core are beta-strands and recognition loops with less stability, termed subglobal motifs. These suggest partially unfolded forms (near-native intermediates) with two levels of stability. The spatial separation of the subglobal motifs on the flanks suggests possible parallelism in their folding as additional beta-strands align with the stable core of six strands. Intermediates may contribute to differences in stabilities and m-values suggested by NHX or kinetics relative to chemical denaturation. Residual structure in the unfolded regime is suggested by superprotection of beta-strand 6 and by GdmCl-dependence of adjustments in amide NMR spectra and residual optical signal. The global folding stability depends strongly on pH, with at least 3 kcal/mol more stability at pH 7.3 than at pH 6.3. This FHA domain is hypothesized to fold progressively with initial hydrophobic collapse of its stable six-stranded core followed by addition of less stable flanking beta-strands and ordering of recognition loops.
Assuntos
Proteínas de Arabidopsis/química , Modelos Moleculares , Fosfoproteínas Fosfatases/química , Dobramento de Proteína , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Interações Hidrofóbicas e Hidrofílicas , Desnaturação Proteica , Estrutura Secundária de Proteína , Estrutura Terciária de ProteínaRESUMO
Hsc70's expected binding site on helix II of the J domain of T antigens appears to be blocked in its structure bound to tumor suppressor pRb. We used NMR to map where mammalian Hsc70 binds the J domain of murine polyomavirus T antigens (PyJ). The ATPase domain of Hsc70 unexpectedly has its biggest effects on the NMR peak positions of the C-terminal end of helix III of PyJ. The Hsc70 ATPase domain protects the C-terminal end of helix III of PyJ from an uncharged paramagnetic probe of chelated Gd(III), clearly suggesting the interface. Effects on the conserved HPD loop and helix II of PyJ are smaller. The NMR results are supported by a novel assay of Hsc70's ATP hydrolysis showing that mutations of surface residues in PyJ helix III impair PyJ-dependent stimulation of Hsc70 activity. Evolutionary trace analysis of J domains suggests that helix III usually may join helix II in contributing specificities for cognate hsp70s. Our novel evidence implicating helix III differs from evidence that Escherichia coli DnaK primarily affects helix II and the HPD loop of DnaJ. We find the pRb-binding fragment of E2F1 to be intrinsically unfolded and a good substrate for Hsc70 in vitro. This suggests that E2F1 could be a substrate for Hsc70 recruited by T antigen to an Rb family member. Importantly, our results strengthen the chaperone hypothesis for E2F release from an Rb family member by Hsc70 recruited by large T antigen. That is, it now appears that Hsc70 can freely access helix III and the HPD motif of large T antigen bound to an Rb family member.
Assuntos
Antígenos Virais de Tumores/química , Fator de Transcrição E2F1/química , Proteínas de Choque Térmico HSC70/química , Polyomavirus/imunologia , Proteína do Retinoblastoma/química , Adenosina Trifosfatases/química , Sequência de Aminoácidos , Animais , Antígenos Virais de Tumores/genética , Fator de Transcrição E2F1/metabolismo , Evolução Molecular , Humanos , Lisina/química , Lisina/genética , Espectroscopia de Ressonância Magnética , Camundongos , Chaperonas Moleculares/química , Chaperonas Moleculares/metabolismo , Conformação Proteica , Dobramento de Proteína , Mapeamento de Interação de Proteínas , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Proteína do Retinoblastoma/metabolismo , Treonina/química , Treonina/genéticaRESUMO
A net increase in the backbone rigidity of the kinase-interacting FHA domain (KI-FHA) from the Arabidopsis receptor kinase-associated protein phosphatase (KAPP) accompanies the binding of a phosphoThr peptide from its CLV1 receptor-like kinase partner, according to (15)N NMR relaxation at 11.7 and 14.1 T. All of the loops of free KI-FHA display evidence of nanosecond-scale motions. Many of these same residues have residual dipolar couplings that deviate from structural predictions. Binding of the CLV1 pT868 peptide seems to reduce nanosecond-scale fluctuations of all loops, including half of the residues of recognition loops. Residues important for affinity are found to be rigid, i.e., conserved residues and residues of the subsite for the key pT+3 peptide position. This behavior parallels SH2 and PTB domain recognition of pTyr peptides. PhosphoThr peptide binding increases KI-FHA backbone rigidity (S(2)) of three recognition loops, a loop nearby, seven strands from the beta-sandwich, and a distal loop. Compensating the trend of increased rigidity, binding enhances fast mobility at a few sites in four loops on the periphery of the recognition surface and in two loops on the far side of the beta-sandwich. Line broadening evidence of microsecond- to millisecond-scale fluctuations occurs across the six-stranded beta-sheet and nearby edges of the beta-sandwich; this forms a network connected by packing of interior side chains and H-bonding. A patch of the slowly fluctuating residues coincides with the site of segment-swapped dimerization in crystals of the FHA domain of human Chfr. Phosphopeptide binding introduces microsecond- to millisecond-scale fluctuations to more residues of the long 8/9 recognition loop of KI-FHA. The rigidity of this FHA domain appears to couple as a whole to pThr peptide binding.
Assuntos
Proteínas de Arabidopsis/química , Proteínas Nucleares/química , Fosfopeptídeos/química , Fosfoproteínas Fosfatases/química , Fosfotreonina/química , Receptores Proteína Tirosina Quinases/química , Fatores de Transcrição/química , Proteínas de Arabidopsis/metabolismo , Sítios de Ligação , Sequência Conservada , Fatores de Transcrição Forkhead , Modelos Moleculares , Nanotecnologia , Ressonância Magnética Nuclear Biomolecular , Proteínas Nucleares/metabolismo , Fosfopeptídeos/metabolismo , Fosfoproteínas Fosfatases/metabolismo , Fosforilação , Fosfotreonina/metabolismo , Ligação Proteica , Proteínas Serina-Treonina Quinases , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Receptores Proteína Tirosina Quinases/metabolismo , Termodinâmica , Fatores de Transcrição/metabolismoRESUMO
The macrocyclic antiviral drug xylyl-bicyclam blocks entry of HIV into cells by targeting the CXCR4 coreceptor, a seven-helix transmembrane G-protein-coupled receptor. Its affinity for CXCR4 is enhanced by binding to Cu2+, Ni2+, or Zn2+. Metallocyclams have a rich configurational chemistry and proteins may bind selectively to specific metallocyclam configurations. Our studies of lysozyme reveal structural details of protein-metallocyclam interactions that are important for receptor recognition. Solution NMR studies show that Cu-cyclam interacts with specific tryptophan residues of lysozyme (Trp-62, Trp-63, and Trp-123). Two major binding sites for both Cu-cyclam and Cu2-xylyl-bicyclam were detected by x-ray crystallography. In the first site, Cu2+ in one cyclam ring of Cu2-xylyl-bicyclam adopts a trans configuration and is coordinated to a carboxylate oxygen of Asp-101, whereas for Cu-cyclam two ring NH groups form H bonds to the carboxylate oxygens of Asp-101, stabilizing an unusual cis (folded) cyclam configuration. For both complexes in this site, a cyclam ring is sandwiched between the indole side chains of two tryptophan residues (Trp-62 and Trp-63). In the second site, a trans cyclam ring is stacked on Trp-123 and H bonded to the backbone carbonyl of Gly-117. We show that there is a pocket in a model of the human CXCR4 coreceptor in which trans and cis configurations of metallobicyclam can bind by direct metal coordination to carboxylate side chains, cyclam-NH...carboxylate H bonding, together with hydrophobic interactions with tryptophan residues. These studies provide a structural basis for the design of macrocycles that bind stereospecifically to G-coupled and other protein receptors.
Assuntos
Fármacos Anti-HIV/química , Fármacos Anti-HIV/metabolismo , Lactamas Macrocíclicas/química , Lactamas Macrocíclicas/metabolismo , Metais/metabolismo , Muramidase/metabolismo , Animais , Benzilaminas , Sítios de Ligação , Galinhas , Cristalografia por Raios X , Ciclamos , Compostos Heterocíclicos/química , Compostos Heterocíclicos/metabolismo , Humanos , Técnicas In Vitro , Modelos Moleculares , Ressonância Magnética Nuclear Biomolecular , Ligação Proteica , Receptores CXCR4/antagonistas & inibidores , Receptores CXCR4/química , Receptores CXCR4/metabolismoRESUMO
Cyclams are 14-membered tetraamine macrocycles which bind strongly to a wide range of metal ions. Medical interest has centred on clinical trials of a bicyclam for the treatment of AIDS and for stem cell mobilization, and on adducts with Tc and Cu radionuclides for diagnosis and therapy. Other potential applications particularly for Cr, Mn, Zn, and Ru cyclams are also emerging. We discuss in this critical review the mechanism of metal complexation, stability of metal cyclams and their structures, with particular emphasis on the variety of configurational states which metal cyclams can adopt. Understanding the factors which control the thermodynamics and kinetics of the interconversion of configurational states of metallo-cyclams may be a key factor in designing novel cyclam derivatives for future use in medicine.
Assuntos
Compostos Heterocíclicos/química , Metais/química , Animais , Fármacos Anti-HIV/química , Benzilaminas , Ciclamos , HIV-1/efeitos dos fármacos , HIV-2/efeitos dos fármacos , Compostos Heterocíclicos/síntese química , Compostos Heterocíclicos/farmacologia , Humanos , Concentração Inibidora 50 , Conformação Molecular , Doadores de Óxido Nítrico/farmacologia , Compostos Radiofarmacêuticos/farmacologia , Estereoisomerismo , Superóxido Dismutase/farmacologiaRESUMO
The interaction of metal cyclams with carboxylate groups is thought to play an important role in their binding to the CXCR4 chemokine receptor and in their anti-HIV activity. Here we report the synthesis of acetate, phthalate, perchlorate and chloride complexes of Zn(II) cyclam (1,4,8,11-tetraazacyclotetradecane). The X-ray crystal structures of [Zn(cyclam)(phthalate)](n)(CH(3)OH)(2n) and [Zn(cyclam)(H(2)O)(2)](OAc)(2) contain octahedral Zn(II) centres. Phthalate acts as a bridging ligand in the former complex, binding through monodentate carboxylate groups, and giving rise to infinite chains in the lattice together with extensive hydrogen bonding between carboxylate donor oxygen atoms and amine and methanol acceptor atoms. The uncoordinated acetate groups and the aqua ligand in the acetate complex are also involved in a rich network of hydrogen bonds and this may account for the unusually long Zn[bond]O distance (2.27 A). In both crystalline complexes, the macrocycle adopts the trans-III (S,S,R,R) configuration. 1D (1)H NMR spectra of all four complexes have been fully assigned by a combination of 2D [(1)H, (1)H] COSY and TOCSY, and [(1)H, (13)C] and [(1 )H, (15)N] HSQC NMR data. In aqueous solution, the stable trans-III configuration found in the solid-state equilibrates slowly (hours at 298 K) with trans-I (R,S,R,S) and cis-V (R,R,R,R) configurations. The trans-III configuration is predominant in aqueous solution for both the chloride and perchlorate complexes, but for the acetate and phthalate complexes, the cis-V configuration dominates. Carboxylate groups appear to stabilize the cis-V configuration in solution through Zn(II) coordination and hydrogen bonding. Titration of the chloride Zn(II)-cyclam complex with acetate confirmed that carboxylates strongly induce formation of the cis-V configuration. This implies that carboxylates can exert a strong influence over configurational selectivity. Cyclam NH hydrogen bonding is prevalent both in the solid state and in solution, and is relevant to the anti-HIV activity of Zn(II) and other metal cyclam complexes and to their ability to recognize the CXCR4 transmembrane co-receptor.