Stand spatial structure and microbial diversity are key drivers of soil multifunctionality during secondary succession in degraded karst forests.

Studying the relationship between biodiversity and ecosystem multifunctionality (the ability of ecosystems to provide multiple ecosystem functions) (BEMF) is a current hotspot in ecology research. Previous studies on BEMF emphasized the role of plant and microbial diversity but rarely mention stand spatial structure. To investigate the effect of stand spatial structure on BEMF, this study established 30 forest dynamic plots in three natural restoration stages (shrubbery, secondary growth forest, and old-growth forest) in Maolan National Nature Reserve, Guizhou province, China. A positive response in soil multifunctionality (SMF), plant species diversity, stand spatial structure, and fungal ß diversity (p < 0.05) followed natural restoration. However, bacterial ß diversity showed a negative response (p < 0.05), while microbial α diversity remained unchanged (p > 0.05). These results based on a structural equation model showed that plant species diversity had no direct or indirect effect on SMF, soil microbial diversity was the only direct driver of SMF, and stand spatial structure indirectly affected SMF through soil microbial diversity. The random forest model showed that soil microbial ß diversity and the Shannon-Wiener index of the diameter at breast height for woody plant species were the optimal variables to characterize SMF and soil microbial diversity, respectively. These results suggested that natural restoration promoted SMF, and microbial diversity had a direct positive effect on SMF. In the meantime, stand spatial structure had a significant indirect effect on SMF, while plant species diversity did not. Future work on degraded karst forest restoration should direct more attention to the role of the stand spatial structure and emphasize the importance of biodiversity.

Variations in species diversity patterns and community assembly rules among vegetation types in the karst landscape.

The various vegetation types in the karst landscape have been considered the results of heterogeneous habitats. However, the lack of a comprehensive understanding of regional biodiversity patterns and the underlying ecological processes limits further research on ecological management. This study established forest dynamic plots (FDPs) of the dominant vegetation types (shrubland, SL; mixed tree and shrub forest, MTSF; coniferous forest, CF; coniferous broadleaf mixed forest, CBMF; and broadleaf forest, BF) in the karst landscape and quantified the species diversity patterns and potential ecological processes. The results showed that in terms of diversity patterns, the evenness and species richness of the CF community were significantly lower than other vegetation types, while the BF community had the highest species richness. The other three vegetation types showed no significant variation in species richness and evenness. However, when controlling the number of individuals of FDPs, the rarefied species richness showed significant differences and ranked as BF > SL > MTSF > CBMF > CF, highlighting the importance of considering the impacts of abundance. Additionally, the community assembly of climax communities (CF or BF) was dominated by stochastic processes such as species dispersal or species formation, whereas deterministic processes (habitat filtering) dominated the secondary forests (SL, MTSF, and CBMF). These findings proved that community assembly differs mainly between the climax community and other communities. Hence, it is crucial to consider the biodiversity and of the potential underlying ecological processes together when studying regional ecology and management, particularly in heterogeneous ecosystems.

Compared with soil fungal diversity and microbial network complexity, soil bacterial diversity drives soil multifunctionality during the restoration process.

Understanding factors driving soil multifunctionality can help with terrestrial ecosystem restoration. Soil microbial diversity and network complexity are two important factors influencing ecosystem multifunctionality. However, their effects on soil multifunctionality are still unclear. Based on high-throughput sequencing, we analyzed soil microbial alpha diversity and network complexity and their relative impacts on soil multifunctionality during the aerial seeding restoration process from 1983 to 2017 in Mu Us sandy land, China, a region threatened by desertification. Our results showed soil bacterial and fungal alpha diversity and multifunctionality increased with aerial seeding restoration. We found the community composition of soil bacteria and fungi changed with restoration periods. The keystone species of the soil bacterial network changed during restoration, while those of the soil fungal network remained unchanged. Soil bacterial and fungal species mainly maintained positive associations throughout the restoration periods. Soil bacterial network complexity initially decreased before increasing with restoration, while soil fungal network complexity increased continuously. Soil multifunctionality was found to have significantly positive correlations with soil fungal network complexity and soil bacterial alpha diversity. Compared with soil fungal alpha diversity and soil microbial network complexity, soil bacterial alpha diversity significantly promoted soil multifunctionality. Our research highlights the critical impact that soil bacterial alpha diversity plays in soil multifunctionality in restored ecosystems threatened by desertification.

How do species richness and its component dependence vary along the natural restoration in extremely heterogeneous forest ecosystems?

Giant habitat heterogeneity is an important factor contributing to the high species richness (SR) in karst forests. Yet, the driving factor behind the alterations in SR patterns during natural restoration remains unclear. In this study, we established the forest dynamics plots along the natural restoration sequence (including shrub-tree mixed forest stage (SC), secondary forest stage (SG) and old-growth forest sage (OG)) in degraded karst forests to compare the SR and the dependence on its components (including total community abundance, species abundance distribution (SAD), and conspecific spatial aggregation (CSA)) among stages of natural restoration. By evaluating the degree of contribution of the components to local SR and rarefied SR, we found that the SG exhibited the highest local SR, while the rarefied SR remained increasing along the restoration sequence after controlling the sample size. At SC-SG stage, SAD and CSA contributed negatively to the differences in SR, while abundance made a positive contribution to SR differences. At SG-OG, abundance contributed positively to the difference in SR at all scales, while SAD contributed negatively at small scales. No significant contribution of CSA was found at observed scales. In addition, local SR varied more significantly with PIE than with abundance. Our research emphasizes the importance of eliminating the influence of abundance on species richness in forest ecology and management, as well as the significance of separately evaluating the components that shape the diversity patterns.

Promoting effects of soil C and N and limiting effect of soil P jointly determine the plant diversity during the aerial seeding restoration process in Mu Us sandy land, China.

Introduction: Exploring the change and maintaining mechanism of plant diversity is of great significance for guiding the restoration of degraded ecosystems. However, how plant taxonomic, functional, and phylogenetic diversity change during long-term ecosystem restoration process and their driving factors remain unclear. Methods: Based on the 35-year time gradient of aerial seeding restoration in Mu Us sandy land, this study explored the changes in plant taxonomic, functional, and phylogenetic diversity and the driving factors. Results: The results showed that plant taxonomic, functional, and phylogenetic diversity showed consistent response with the aerial seeding restoration, all of which increased first and then tended to a saturation state in the middle of restoration (14 years). TN, TOC, and NO3 --N increased with aerial seeding restoration and showed a significant positive correlation with plant diversity of the three dimensions, while AP showed a negative correlation. Soil nitrogen and carbon promoted the increase of diversity of three dimensions in the early restoration period, while phosphorus limited the increase of diversity of three dimensions in the middle and late restoration periods. The diversity of three dimensions was mainly affected by restoration time, soil nutrients, and climate factors, and the coupling effect of restoration time and soil nutrients was dominant. Discussion: These findings indicate that the plant diversity in different dimensions and soil nutrients are improved by aerial seeding restoration. Our study highlights that aerial seeding restoration mainly improves plant diversity by increasing soil nutrients, and the relative effects of different soil nutrients on plant diversity during restoration are inconsistent.

Dominant influence of plants on soil microbial carbon cycling functions during natural restoration of degraded karst vegetation.

The impacts of natural restoration projects on soil microbial carbon (C) cycling functions have not been well recognized despite their wide implementation in the degraded karst areas of southwest China. In this study, metagenomic sequencing assays were conducted on functional genes and microorganisms related to soil C-cycling at three natural restoration stages (shrubbery, TG; secondary forest, SG; old-growth forest, OG) in the southeast of Guizhou Province, China. The aims were to investigate the changes in microbial potentials responsible for soil C cycling and the underlying driving forces. The natural restoration resulted in vegetation establishment at all three restoration stages, rendering alterations of soil microbial C cycle functions as indicated by metagenomic gene assays. When TG was restored into OG, the number and diversity of genes and microorganisms involved in soil C cycling remained unchanged, but their composition underwent significant shifts. Specifically, microbial potentials for soil C decomposition exhibited an increase driven by the collaborative efforts of plants and soils, while microbial potentials for soil C biosynthesis displayed an initial upswing followed by a subsequent decline which was primarily influenced by plants alone. In comparison to soil nutrients, it was determined that plant diversities served as the primary driving factor for the alterations in microbial carbon cycle potentials. Soil microbial communities involved in C cycling were predominantly attributed to Proteobacteria (31.87%-40.25%) and Actinobacteria (11.29%-26.07%), although their contributions varied across the three restoration stages. The natural restoration of degraded karst vegetation thus influences soil microbial C cycle functions by enhancing C decomposition potentials and displaying a nuanced pattern of biosynthesis potentials, primarily influenced by above-ground plants. These results provide valuable new insights into the regulation of soil C cycling during the restoration of degraded karst vegetation from genetic and microbial perspectives.

How do multidimensional traits of dominant diatom Aulacoseira respond to abiotic and biotic factors in a river delta system?

Trait-based approaches are being increasingly applied in ecology, and the influence of individual-level trait variation on communities and species has been demonstrated. However, the responses of individual trait variation to environmental changes remain to be explored. To examine the indicating functions of multidimensional traits, individual-level measurements of the dominant diatom genus Aulacoseira Thwaites in the Pearl River Delta were performed, and corresponding responses of three trait indices (trait richness, trait evenness, and trait dispersion) to abiotic and biotic factors were examined. Our results indicated that the three individual trait diversity indices were regulated by different factors. Trait richness was only significantly affected by abiotic factors (temperature), while trait evenness and trait dispersion were regulated by both abiotic and biotic factors. In addition, the direct influence of abiotic factors was more significant than that of biotic factors, implying that the multidimensional trait variation of Aulacoseira was more responsive to environmental changes than to interspecific interactions. Therefore, the multidimensional trait variation of Aulacoseira could be used as an effective indicator to track environmental changes. Our study elucidated the mechanisms relating individual-level trait variation to phytoplankton community dynamics; this could improve our ability to forecast changes in ecosystem properties across environmental gradients.

Plant functional ß diversity is an important mediator of effects of aridity on soil multifunctionality.

Previous studies have demonstrated that plant diversity not only plays an important role in maintaining ecosystem functions but can also mediate the impact of climate change on ecosystem functions. However, the relative importance of multiple aspects of diversity at different scales remains unclear. In this study, we investigated species, functional, and phylogenetic aspects of diversity at α and ß scales, and measured eight soil functions (aboveground productivity, soil organic carbon, total soil nitrogen, total soil phosphorus, soil available nitrogen, soil available phosphorus, soil carbon-nitrogen ratio, and soil nitrogen-phosphorus ratio) to comprehensively assess the relationship between multiple aspects and scales of plant diversity and soil multifunctionality along an aridity gradient across the grasslands of Inner Mongolia. Diversity at α and ß scales explained soil multifunctionality synergistically. Functional diversity explained most of the soil multifunctionality, while phylogenetic diversity explained the least. Aridity had both direct effects on soil multifunctionality, and indirect effects mediated mainly by functional α and ß diversity. These findings indicate that in addition to α diversity, ß diversity also played an important role in maintaining soil multifunctionality, and was an important mediator for the adverse impact of aridity on soil multifunctionality. Our study highlights the critical role of ß diversity, especially regarding functional traits, in predicting the consequences of the increasingly arid conditions in the Inner Mongolian grasslands.

Adaptation of Dominant Species to Drought in the Inner Mongolia Grassland - Species Level and Functional Type Level Analysis.

The adaptation of plants to drought through the adjustment of their leaf functional traits is a hot topic in plant ecology. However, while there is a good understanding of how individual species adapt to drought in this way, the way in which different functional types adapt to drought along a precipitation gradient remains poorly understood. In this study, we sampled 22 sites along a precipitation gradient in the Inner Mongolia grassland and measured eight leaf functional traits across 39 dominant species to determine the adaptive strategies of plant leaves to drought at the species and plant functional type levels. We found that leaf functional traits were mainly influenced by both aridity and phylogeny at the species level. There were four types of leaf adaptations to drought at the functional type level: adjusting the carbon-nitrogen ratio, the specific leaf area, the nitrogen content, and the specific leaf area and leaf nitrogen content simultaneously. These findings indicate that there is the trade-offs relationship between water and nitrogen acquisition as the level of drought increases, which is consistent with the worldwide leaf economics spectrum. In this study, we highlighted that the leaf economic spectrum can be adopted to reveal the adaptations of plants to drought in the Inner Mongolia grassland.

Intensive land-use drives regional-scale homogenization of plant communities.

Intensive anthropogenic land-use causes habitat loss and landscape homogenization, which leads to the decrease of biodiversity and ecosystem degradation. Therefore, it is important to study the influence of landscape heterogeneity on biodiversity. In this study, vegetation surveys conducted at 53 sites in the Tabu River basin, located at the agro-pastoral ecotone of Inner Mongolia of China, revealed 146 species. Species diversity was evaluated at three scales: species richness within patches (alpha diversity), between patches (beta diversity) and at the landscape scale (gamma diversity). We analyzed landscape heterogeneity (LHtotal) and its driving factors including environmental variables (LHDFenv-var, such as precipitation and altitude), environmental heterogeneity (LHDFenv-het) and human activities (LHDFhum). We used structural equation modeling (SEM) to evaluate the response of species richness to landscape heterogeneity at three scales and determined the relative contribution of driving factors in explaining species diversity at these scales. The results of the study are summarized as follows: 1) Alpha diversity was the dominant component of gamma diversity in the Tabu River basin in Inner Mongolia. 2) There is no significant correlation (P = 0.512) between alpha diversity and LHtotal; with the increase of LHtotal beta and gamma diversities showed hump-shaped relationships. 3) LHDFenv-het was the primary factor in maintaining alpha diversity, with heterogeneity of mean annual precipitation (MAP), temperature (MAT) and altitude (ALT) acting as three largest contributors. LHDFhum primarily contributed to the maintenance of beta diversity. 4) LHDFhum was the primary contributor to gamma diversity, and human activity exceeded threshold values for positive effects. Based on our findings we suggest liming agricultural use along the river to prevent reductions in species diversity.

Increasing vertical resolution in US models to improve track forecasts of Hurricane Joaquin with HWRF as an example.

The atmosphere-ocean coupled Hurricane Weather Research and Forecast model (HWRF) developed at the National Centers for Environmental Prediction (NCEP) is used as an example to illustrate the impact of model vertical resolution on track forecasts of tropical cyclones. A number of HWRF forecasting experiments were carried out at different vertical resolutions for Hurricane Joaquin, which occurred from September 27 to October 8, 2015, in the Atlantic Basin. The results show that the track prediction for Hurricane Joaquin is much more accurate with higher vertical resolution. The positive impacts of higher vertical resolution on hurricane track forecasts suggest that National Oceanic and Atmospheric Administration/NCEP should upgrade both HWRF and the Global Forecast System to have more vertical levels.

High-throughput sequencing of 16S rDNA amplicons characterizes bacterial composition in bronchoalveolar lavage fluid in patients with ventilator-associated pneumonia.

Ventilator-associated pneumonia (VAP) is a life-threatening disease that is associated with high rates of morbidity and likely mortality, placing a heavy burden on an individual and society. Currently available diagnostic and therapeutic approaches for VAP treatment are limited, and the prognosis of VAP is poor. The present study aimed to reveal and discriminate the identification of the full spectrum of the pathogens in patients with VAP using high-throughput sequencing approach and analyze the species richness and complexity via alpha and beta diversity analysis. The bronchoalveolar lavage fluid samples were collected from 27 patients with VAP in intensive care unit. The polymerase chain reaction products of the hypervariable regions of 16S rDNA gene in these 27 samples of VAP were sequenced using the 454 GS FLX system. A total of 103,856 pyrosequencing reads and 638 operational taxonomic units were obtained from these 27 samples. There were four dominant phyla, including Proteobacteria, Firmicutes, Actinobacteria, and Bacteroidetes. There were 90 different genera, of which 12 genera occurred in over ten different samples. The top five dominant genera were Streptococcus, Acinetobacter, Limnohabitans, Neisseria, and Corynebacterium, and the most widely distributed genera were Streptococcus, Limnohabitans, and Acinetobacter in these 27 samples. Of note, the mixed profile of causative pathogens was observed. Taken together, the results show that the high-throughput sequencing approach facilitates the characterization of the pathogens in bronchoalveolar lavage fluid samples and the determination of the profile for bacteria in the bronchoalveolar lavage fluid samples of the patients with VAP. This study can provide useful information of pathogens in VAP and assist clinicians to make rational and effective therapeutic decisions.