Holocene life and microbiome profiling in ancient tropical Lake Chalco, Mexico.

Metagenomic and traditional paleolimnological approaches are suitable to infer past biological and environmental changes, however, they are often applied independently, especially in tropical regions. We combined both approaches to investigate Holocene Prokaryote and Eukaryote diversity and microbial metabolic pathways in ancient Lake Chalco, Mexico. Here, we report on diversity among a large number of lineages (36,722 OTUs) and functional diversity (27,636,243 non-clustered predicted proteins, and 6,144 annotated protein-family genes). The most abundant domain is Bacteria (81%), followed by Archaea (15%) and Eukarya (3%). We also determined the diversity of protein families and their relationship to metabolic pathways. The early Holocene (> 11,000 cal years BP) lake was characterized by cool, freshwater conditions, which later became warmer and hyposaline (11,000-6,000 cal years BP). We found high abundances of cyanobacteria, and fungi groups associated with mature forests in these sediments. Bacteria and Archaea include mainly anaerobes and extremophiles that are involved in the sulfur, nitrogen, and carbon cycles. We found evidence for early human impacts, including landscape modifications and lake eutrophication, which began ~ 6,000 cal years BP. Subsaline, temperate conditions were inferred for the past 5,000 years. Finally, we found nitrogen-fixing bacteria and protein-family genes that are linked to contaminated environments, as well as several fungal pathogens of crops in near-surface sediments.

Testate Amoebae (Amebozoa: Arcellinida) in Tropical Lakes of Central Mexico / Amebas testadas (Amebozoa, Arcellinida) en lagos tropicales del centro de México

AbstractTestate amoebae are common single-celled eukaryotic organisms in aquatic ecosystems. Despite their important role in these ecosystems, and their potential as bioindicators and paleoindicators, they remain poorly studied in Mexico. The major objectives of this study were to: 1) increase knowledge of testate amoebae in Mexico's tropical lakes, and 2) create a catalog of high-quality scanning electron micrographs that can be used for future ecological and paleoenvironmental studies. We collected surface-sediment samples from 29 lakes, located in the Transmexican Volcanic Belt, one at each lake during June and October 2011, and March 2013. Sediments were collected with an Ekman grab and preserved in anhydrous ethanol. Sub-samples were observed under a stereomicroscope and morphometric data for each species were recorded. Total diameter and aperture diameter were measured on circular tests. Irregularly shaped tests were measured for length and width of the aperture and for the size of the whole test. If a specimen possessed spines, the length of one randomly selected spine was measured. The best-preserved specimen of each taxon was photographed with an optical microscope and a scanning electron microscope (SEM). We found 41 taxa of testate amoebae belonging to the genera: Arcella, Argynnia, Centropyxis, Cucurbitella, Cyclopyxis, Cyphoderia, Difflugia, Euglypha, Lesquereusia, Pentagonia, Pseudodifflugia and Scutiglypha. Twelve species not previously reported for Mexico were recorded, along with 13 varieties. The average number of taxa recorded in each lake was eight, and the highest taxonomic richness was 18. The taxon found in the greatest number of lakes was Centropyxis aculeata var. aculeata. Taxonomic richness varied among lakes in the same region. This could reflect lake-specific differences in environmental conditions, underscoring the need for more detailed studies that include collection of data on physical and chemical variables in the lakes. Our results highlighted the need of further studies for the distribution patterns and ecology of lacustrine testate amoebae. Rev. Biol. Trop. 64 (1): 377-397. Epub 2016 March 01.

ResumenLas amebas testadas son organismos eucariontes unicelulares frecuentes en ecosistemas acuáticos. A pesar de su importante rol en estos ecosistemas, y su potencial como bioindicadores y paleoindicadores, son poco estudiados en México. Los principales objetivos de este estudio fueron: 1) incrementar el conocimiento de las amebas testadas en lagos tropicales de México y 2) crear un catálogo de microfotografías electrónicas de barrido de alta calidad que pueda ser usado en futuros estudios ecológicos y paleoambientales. Recolectamos muestras de sedimentos superficiales de 29 lagos, ubicados en la Faja Volcánica Transmexicana, una vez en cada lago durante junio y octubre 2011 y marzo 2013. Los sedimentos se recolectaron con una draga tipo Ekman y se preservaron en etanol anhidro. Las sub-muestras se observaron al microscopio estereoscópico. Para cada especie fueron registrados sus datos morfométricos. En testas circulares fueron medidos el diámetro y la apertura total. En testas irregulares fueron medidos el largo y ancho de la apertura y el tamaño de toda la testa. Si un ejemplar poseía espinas, se seleccionó una al azar y se midió su longitud. El ejemplar mejor preservado de cada taxón fue fotografiado con un microscopio óptico y en microscopio electrónico de barrido (MEB). Encontramos 41 taxa de amebas testadas pertenecientes a los géneros Arcella, Argynnia, Centropyxis, Cucurbitella, Cyclopyxis, Cyphoderia, Difflugia, Euglypha, Lesquereusia, Pentagonia, Pseudodifflugia y Scutiglypha. Se registraron 12 especies y 13 variedades que no estaban reportadas previamente en México. El número promedio de taxa registrados en cada lago fue de ocho, y la riqueza taxonómica mayor fue de 18. El taxón encontrado en el mayor número de lagos fue Centropyxis aculeata var. aculeata. La riqueza taxonómica compartida por lagos de la misma región no fue muy similar. Esto puede reflejar diferencias en las condiciones ambientales, evidenciando la necesidad de elaborar estudios más detallados que incluyan la recolección de datos de las variables físico-químicas en los lagos. Nuestros resultados resaltan la necesidad de estudios posteriores acerca de los patrones de distribución y la ecología de las amebas testadas lacustres.

Testate Amoebae (Amebozoa: Arcellinida) in Tropical Lakes of Central Mexico.

Testate amoebae are common single-celled eukaryotic organisms in aquatic ecosystems. Despite their important role in these ecosystems, and their potential as bioindicators and paleoindicators, they remain poorly studied in Mexico. The major objectives of this study were to: 1) increase knowledge of testate amoebae in Mexico's tropical lakes, and 2) create a catalog of high-quality scanning electron micrographs that can be used for future ecological and paleoenvironmental studies. We collected surface-sediment samples from 29 lakes, located in the Transmexican Volcanic Belt, one at each lake during June and October 2011, and March 2013. Sediments were collected with an Ekman grab and preserved in anhydrous ethanol. Sub-samples were observed under a stereomicroscope and morphometric data for each species were recorded. Total diameter and aperture diameter were measured on circular tests. Irregularly shaped tests were measured for length and width of the aperture and for the size of the whole test. If a specimen possessed spines, the length of one randomly selected spine was measured. The best-preserved specimen of each taxon was photographed with an optical microscope and a scanning electron microscope (SEM). We found 41 taxa of testate amoebae belonging to the genera: Arcella, Argynnia, Centropyxis, Cucurbitella, Cyclopyxis, Cyphoderia, Difflugia, Euglypha, Lesquereusia, Pentagonia, Pseudodifflugia and Scutiglypha. Twelve species not previously reported for Mexico were recorded, along with 13 varieties. The average number of taxa recorded in each lake was eight, and the highest taxonomic richness was 18. The taxon found in the greatest number of lakes was Centropyxis aculeata var. aculeata. Taxonomic richness varied among lakes in the same region. This could reflect lake-specific differences in environmental conditions, underscoring the need for more detailed studies that include collection of data on physical and chemical variables in the lakes. Our results highlighted the need of further studies for the distribution patterns and ecology of lacustrine testate amoebae.

Non-marine ostracodes from highland lakes in East-central Mexico / Ostrácodos no-marinos de lagos en el altiplano este-centro de México

The ostracode fauna of the neartic-neotropical transitional zone has remained poorly known until this study. Ten ostracode species inhabit ten highland lakes (five maar lakes (phreatic/phreato-magmatic explosion origin), one volcanic-tectonic lake, three natural dams and one man-made dam) in East-central Mexico. Surface sediments from the deepest part and the littoral zone from all studied lakes were collected. Environmental variables (pH, temperature, dissolved oxygen, conductivity, TDS) were measured in situ and parallel water samples for chemical analysis were collected for habitat description. Widely distributed species in the study area (≥5 lakes) include Cypridopsis vidua, Darwinula stevensoni and Eucandona cf. patzcuaro. Limnocytherina axalapasco is an endemic species and was collected in three maar lakes and in one man-made dam. Rare species included: Chlamydotheca arcuata?, Fabaeformiscandona acuminata?, Ilyocypris gibba?, Limnocythere friabilis?, Potamocypris smaragdina? and Potamocypris unicaudata?. Highest species richness (6 spp.) was found in the large and shallow Lake Metztitlán (2.6km², 5.5m deep), with the lake water type HCO3->>SO4²->Cl--- Ca2+>Na+>Mg2+. The rest of studied lakes (<63m, <27km²) had not more than three species. For instance, only two ostracode species were collected in Lake Alchichica, which is the largest, deepest and most saline studied maar lake. Rev. Biol. Trop. 63 (2): 401-425. Epub 2015 June 01.

La fauna de ostrácodos de la zona de transición néartica-neotropical ha sido poco estudiada hasta este estudio. En el este-centro de México, habitan diez especies de ostrácodos en diez lagos: cinco lagos maar (originados por explosiones freáticas/freato-magmáticas), un lago volcánico-tectónico, tres embalses naturales y un embalse artificial. De la parte más profunda y de las zonas litorales de todos los lagos estudiados se recolectaron sedimentos superficiales para el análisis de ostrácodos. También se midieron in situ las variables ambientales: pH, temperatura, oxígeno disuelto, conductividad, SDT, además se recolectaron muestras de agua paralelas para análisis químico con el objetivo de describir el hábitat. Especies con una amplia distribución en el área de estudio (≥5 lagos) incluyen: Cypridopsis vidua, Darwinula stevensoni y Eucandona cf. patzcuaro. Limnocytherina axalapasco es una especie endémica y fue recolectada en tres lagos maar y en el embalse artificial. Especies raras incluyeron: Chlamydotheca arcuata?, Fabaeformiscandona acuminata?, Ilyocypris gibba?, Limnocythere friabilis?, Potamocypris smaragdina? y Potamocypris unicaudata? La riqueza de especies más alta (6 spp.) se encontró en el lago más extenso y somero, lago Metztitlán (2.6km², 5.5m de profundidad), con el tipo de agua HCO3->>SO4²->Cl--- Ca2+>Na+>Mg2+. El resto de lagos estudiados (<63m, <27km²) presentaron no más de tres especies. Por ejemplo, solamente dos especies de ostrácodos fueron recolectadas en el lago Alchichica, el cual es el más extenso, profundo y salino entre los lagos maar estudiados.

Millennial-scale temperature change velocity in the continental northern Neotropics.

Climate has been inherently linked to global diversity patterns, and yet no empirical data are available to put modern climate change into a millennial-scale context. High tropical species diversity has been linked to slow rates of climate change during the Quaternary, an assumption that lacks an empirical foundation. Thus, there is the need for quantifying the velocity at which the bioclimatic space changed during the Quaternary in the tropics. Here we present rates of climate change for the late Pleistocene and Holocene from Mexico and Guatemala. An extensive modern pollen survey and fossil pollen data from two long sedimentary records (30,000 and 86,000 years for highlands and lowlands, respectively) were used to estimate past temperatures. Derived temperature profiles show a parallel long-term trend and a similar cooling during the Last Glacial Maximum in the Guatemalan lowlands and the Mexican highlands. Temperature estimates and digital elevation models were used to calculate the velocity of isotherm displacement (temperature change velocity) for the time period contained in each record. Our analyses showed that temperature change velocities in Mesoamerica during the late Quaternary were at least four times slower than values reported for the last 50 years, but also at least twice as fast as those obtained from recent models. Our data demonstrate that, given extremely high temperature change velocities, species survival must have relied on either microrefugial populations or persistence of suppressed individuals. Contrary to the usual expectation of stable climates being associated with high diversity, our results suggest that Quaternary tropical diversity was probably maintained by centennial-scale oscillatory climatic variability that forestalled competitive exclusion. As humans have simplified modern landscapes, thereby removing potential microrefugia, and climate change is occurring monotonically at a very high velocity, extinction risk for tropical species is higher than at any time in the last 86,000 years.