Are we there yet? Management baselines and biodiversity indicators for the protection and restoration of subtidal bivalve shellfish habitats.

Biodiversity loss and degradation of natural habitats is increasing at an unprecedented rate. Of all marine habitats, biogenic reefs created by once-widespread shellfish, are now one of the most imperilled, and globally scarce. Conservation managers seek to protect and restore these habitats, but suitable baselines and indicators are required, and detailed scientific accounts are rare and inconsistent. In the present study the biodiversity of a model subtidal habitat, formed by the keystone horse mussel Modiolus modiolus (L.), was analysed across its Northeast Atlantic biogeographical range. Consistent samples of 'clumped' mussels were collected at 16 locations, covering a wide range of environmental conditions. Analysis of the associated macroscopic biota showed high biodiversity across all sites, cumulatively hosting 924 marine macroinvertebrate and algal taxa. There was a rapid increase in macroinvertebrate biodiversity (H') and community evenness (J) between 2 and 10 mussels per clump, reaching an asymptote at mussel densities of 10 per clump. Diversity declined at more northern latitudes, with depth and in coarser substrata with the fastest tidal flows. Diversity metrics corrected for species abundance were generally high across the habitats sampled, with significant latitudinal variability caused by current, depth and substrate type. Faunal community composition varied significantly between most sites and was difficult to assign to a 'typical' M. modiolus assemblage, being significantly influenced by regional environmental conditions, including the presence of algal turfs. Within the context of the rapid global increase in protection and restoration of bivalve shellfish habitats, site and density-specific values of diversity are probably the best targets for conservation management and upon which to base monitoring programmes.

Commercially important species associated with horse mussel (Modiolus modiolus) biogenic reefs: A priority habitat for nature conservation and fisheries benefits.

Horse mussel reefs (Modiolus modiolus) are biodiversity hotspots afforded protection by Marine Protected Areas (MPAs) in the NE Atlantic. In this study, horse mussel reefs, cobble habitats and sandy habitats were assessed using underwater visual census and drop-down video techniques in three UK regions. Megafauna were enumerated, differences in community composition and individual species abundances were analysed. Samples of conspicuous megafauna were also collected from horse mussel reefs in Orkney for stable isotope analysis. Communities of conspicuous megafauna were different between horse mussel habitats and other habitats throughout their range. Three commercially important species: whelks (Buccinum undatum), queen scallops (Aequipecten opercularis) and spider crabs (Maja brachydactyla) were significantly more abundant (by as much as 20 times) on horse mussel reefs than elsewhere. Isotopic analysis provided insights into their trophic relationship with the horse mussel reef. Protection of M. modiolus habitat can achieve biodiversity conservation objectives whilst benefiting fisheries also.

Population Structure, Abundance and Movement of Whale Sharks in the Arabian Gulf and the Gulf of Oman.

Data on the occurrence of whale sharks, Rhincodon typus, in the Arabian Gulf and Gulf of Oman were collected by dedicated boat surveys and via a public-sightings scheme during the period from 2011 to 2014. A total of 422 individual whale sharks were photo-identified from the Arabian Gulf and the northern Gulf of Oman during that period. The majority of sharks (81%, n = 341) were encountered at the Al Shaheen area of Qatar, 90 km off the coast, with the Musandam region of Oman a secondary area of interest. At Al Shaheen, there were significantly more male sharks (n = 171) than females (n = 78; X2 = 17.52, P < 0.05). Mean estimated total length (TL) for sharks was 6.90 m ± 1.24 (median = 7 m; n = 296). Males (7.25 m ± 1.34; median = 8 m, n = 171) were larger than females (6.44 m ±1.09; median = 7 m, n = 78; Mann-Whitney U test, p < 0.01). Of the male sharks assessed for maturity 63% were mature (n = 81), with 50% attaining maturity by 7.29 m and 100% by 9.00 m. Two female sharks of >9 m individuals were visually assessed as pregnant. Connectivity among sharks sighted in Qatari, Omani and UAE waters was confirmed by individual spot pattern matches. A total of 13 identified sharks were re-sighted at locations other than that at which they were first sighted, including movements into and out of the Arabian Gulf through the Strait of Hormuz. Maximum likelihood techniques were used to model an estimated combined population for the Arabian Gulf and Gulf of Oman of 2837 sharks ± 1243.91 S.E. (95% C.I. 1720-6295). The Al Shaheen aggregation is thus the first site described as being dominated by mature males while the free-swimming pregnant females are the first reported from the Indian Ocean.

Fishery of the Green Jack Caranx caballus (Osteichytes: Carangidae) in Las Perlas Archipelago, Pacific Panama.

Green Jacks, Caranx caballus, are distributed along the Eastern Pacific coast. In Panama, C. caballus was heavily fished around Las Perlas Archipelago to sustain local markets until 2007, when the archipelago was declared a marine protected area. This first study in Panama, analyzed a sample of 4 990 individuals from Las Perlas, obtained monthly from June 2005 to June 2006, from landings at the central fish market. Average total length was 36.1 +/- 6.4cm and optimum length 38.9cm. Approximately 68% of fish lengths were within +/-10% of the optimal length but only six (15%) were considered mega-spawners. The von Bertalanffy parameters describe a long-lived and fast growing species, while mortality rates revealed that C. caballus is under high fishing pressure. Standard length at which half of the population is mature was 38.8cm, and the size at which individuals matured massively, 33cm. Only 10-13% of the fish were immature. C. caballus reproduces two to three times per year, with peaks in December, April, and probably September, and recruits to the population at least twice per year. Catch per unit effort (CPUE) was best predicted by minimum annual values of the Multivariate ENSO/LNSO Index (MEI) (R2=0.54). Results show that C. caballus in Pacific Panama is overfished. We recommend the raising of the minimum capture/landing size of this species in order to increase the proportion of mega-spawners in the population and guarantee the sustainability of this resource.

Fishery of the Green Jack Caranx caballus (Osteichytes: Carangidae) in Las Perlas Archipelago, Pacific Panama

Green Jacks, Caranx caballus, are distributed along the Eastern Pacific coast. In Panama, C. caballus was heavily fished around Las Perlas Archipelago to sustain local markets until 2007, when the archipelago was declared a marine protected area. This first study in Panama, analyzed a sample of 4 990 individuals from Las Perlas, obtained monthly from June 2005 to June 2006, from landings at the central fish market. Average total length was 36.1±6.4cm and optimum length 38.9cm. Approximately 68% of fish lengths were within ±10% of the optimal length but only six (15%) were considered mega-spawners. The von Bertalanffy parameters describe a long-lived and fast growing species, while mortality rates revealed that C. caballus is under high fishing pressure. Standard length at which half of the population is mature was 38.8cm, and the size at which individuals matured massively, 33cm. Only 10-13% of the fish were immature. C. caballus reproduces two to three times per year, with peaks in December, April, and probably September, and recruits to the population at least twice per year. Catch per unit effort (CPUE) was best predicted by minimum annual values of the Multivariate ENSO/ LNSO Index (MEI) (R²=0.54). Results show that C. caballus in Pacific Panama is overfished. We recommend the raising of the minimum capture/landing size of this species in order to increase the proportion of megaspawners in the population and guarantee the sustainability of this resource.

El jurel verde o “cojinúa”, Caranx caballus, se distribuye a lo largo de la costa del Pacífico Oriental. En el Archipiélago de Las Perlas, Panamá, la cojinúa fue pescada sin control para sostener mercados locales hasta el 2007, fecha en la que esta región fue declarada área marina protegida. En este primer estudio para Panamá, se analizaron desde junio de 2005 a junio de 2006, 4 990 individuos en las descargas del Mercado Central de Mariscos provenientes de Las Perlas. La longitud media total de esta especie fue de 36.1±6.4cm y la longitud óptima, 38.9cm. Aproximadamente, 68% de los individuos muestreados poseen longitudes dentro de ±10% de la longitud óptima, pero sólo seis (15%) eran mega-reproductores. Los parámetros de la ecuación de von Bertalanffy describen la especie como de larga vida y de rápido crecimiento, mientras que las tasas de mortalidad indican que la cojinúa está bajo una alta presión de pesca. La longitud estándar a la que la mitad de la población es sexualmente madura es 38.8cm y el tamaño de maduración masiva, 33cm. Sólo entre el 10-13% de los individuos muestreados son inmaduros. La cojinúa se reproduce 2-3 veces al año, con picos en diciembre, abril y probablemente septiembre, y recluta a la población por lo menos dos veces al año. Los valores mínimos anuales del Índice ENSO/LNSO multivariado (MEI) son los mejores predictores de la CPUE de esta especie (R²=0.54). Nuestros resultados demuestran que la cojinúa en el Pacífico Panameño está sobreexplotada por lo que recomendamos elevar la talla mínima de captura para permitir que aumente la proporción de mega-reproductores en la población con el fin de garantizar la sostenibilidad del recurso.

Mangrove forest composition and structure in Las Perlas Archipelago, Pacific Panama

Mangrove forest is an important ecosystem that provides many services, but in Panama, as in other countries, they are under threat due to a variety of human activities. Nowadays, large areas of mangroves continue to be lost without been described and lack of management strategies. This study focused on the mangrove structure in the two largest islands, Isla del Rey and Isla San Jose, of Las Perlas Archipelago (LPA), Pacific Panama. Assessment of Landsat satellite imagery revealed loss of mangroves in the LPA of 965ha in the period 1974-1986, and 248ha in the period 1986-2000. The majority of the loss (>77%) from the two study islands was due to timber extraction and agricultural development. In May 2006, permanent plots following the CARICOMP protocol were established at two sites on Isla del Rey (R1 and R2) and one site on Isla San Jose (SJ) where standardized metrics such as species, height and diameter at breast height of adult trees and seedlings were recorded. Forest structure differed at the three sites, although R1 and R2 were most similar. At R1, Laguncularia racemosa was the important species and R2 was dominated by Pelliciera rhizophorae. Examination of the forest structure and classified imagery indicated that these sites are spatially dynamic and appear to be rejuvenating. The forest structure would indicate that the sites have been growth-limited previously by human activities and possibly by other factors. SJ was dominated by Rhizophora mangle and appears to have a mature forest with large adult trees and few seedlings. It does not appear to have shown the same extent of spatial regrowth as the other two sites between 1986 and 2000 and is relatively static. The establishment of permanent plots and monitoring will be useful as part of the management plan, as the LPA shows a variety of mangrove structures and could be subject to further coastal development. Rev. Biol. Trop. 58 (3): 857-869. Epub 2010 September 01.

Los bosques de manglar son ecosistemas importantes que proveen muchos servicios, pero éstos están bajo la amenaza de una variedad de actividades humanas y grandes áreas de manglar continúan perdiéndose en Panamá. Este estudio está enfocado en la estructura de manglar de las dos islas más grandes del Archipiélago de Las Perlas en el Pacifico Panameño (LPA), la Isla del Rey y la Isla San José. La evaluación de las imágenes del satélite Landsat revela la pérdida de manglares en LPA de 965ha en el periodo entre 1974-1986, y de 286ha en el periodo 1986-2000. La mayor parte de la pérdida (>77%) en las dos islas estudiadas fue debida a la extracción de madera y al desarrollo agrícola. En mayo de 2006, se establecieron parcelas permanentes siguiendo el protocolo de CARICOMP en dos sitios en la isla del Rey (R1 y R2) y un sitio en la Isla San José (SJ) donde especies, altura y diámetro a la altura de la copa de árboles adultos y jóvenes fueron registradas. La estructura del bosque difirió en los tres sitios, sin embargo R1 y R2 fueron los más similares. En R1, Laguncularia racemosa fue la especie más dominante y Pelliceria rhizophora en R2. El análisis de la estructura del bosque y de imágenes clasificadas indicó que estos sitios son espacialmente dinámicos y parecen estar regenerándose. La estructura del bosque indica que el crecimiento en los sitios ha estado limitado por las actividades humanas y posiblemente por otros factores. SJ fue dominado por Rhizophora mangle y parece tener un bosque maduro con árboles adultos grandes y pocos jóvenes. Éste sitio no parece mostrar la misma extensión de rebrote espacial de los otros dos sitios entre 1986-2000 y es relativamente estático. El establecimiento de parcelas permanentes y el monitoreo serán útiles en la implementación del plan de manejo, ya que los manglares del LPA tienen una variedad estructural y podrían estar sujetos a un mayor desarrollo costero.

Mangrove forest composition and structure in Las Perlas Archipelago, Pacific Panama.

Mangrove forest is an important ecosystem that provides many services, but in Panama, as in other countries, they are under threat due to a variety of human activities. Nowadays, large areas of mangroves continue to be lost without been described and lack of management strategies. This study focused on the mangrove structure in the two largest islands, Isla del Rey and Isla San Jose, of Las Perlas Archipelago (LPA), Pacific Panama. Assessment of Landsat satellite imagery revealed loss of mangroves in the LPA of 965ha in the period 1974-1986, and 248ha in the period 1986-2000. The majority of the loss (>77%) from the two study islands was due to timber extraction and agricultural development. In May 2006, permanent plots following the CARICOMP protocol were established at two sites on Isla del Rey (R1 and R2) and one site on Isla San Jose (SJ) where standardized metrics such as species, height and diameter at breast height of adult trees and seedlings were recorded. Forest structure differed at the three sites, although R1 and R2 were most similar. At R1, Laguncularia racemosa was the important species and R2 was dominated by Pelliciera rhizophorae. Examination of the forest structure and classified imagery indicated that these sites are spatially dynamic and appear to be rejuvenating. The forest structure would indicate that the sites have been growth-limited previously by human activities and possibly by other factors. SJ was dominated by Rhizophora mangle and appears to have a mature forest with large adult trees and few seedlings. It does not appear to have shown the same extent of spatial regrowth as the other two sites between 1986 and 2000 and is relatively static. The establishment of permanent plots and monitoring will be useful as part of the management plan, as the LPA shows a variety of mangrove structures and could be subject to further coastal development.

Mapping benthic faunal communities in the shallow and deep sediments of Las Perlas Archipelago, Pacific Panama.

Las Perlas Archipelago (LPA) is located off the Pacific Coast of Panama and was designated as a marine protected area (MPA) in 2007. This baseline study of the shallow and deeper sedimentary habitats of the islands partly informed the MPA designation. Ninety-two grab stations and twenty trawl stations were sampled. Sediment grab sample results were interpolated to produce a map that showed the area to be dominated by mud (1246 km2, 40%) and sand/shell sediments (780 km2, 25%). A total of 201 taxa were recorded and over 5800 individual specimens were processed, revealing that the sediments hold varying community compositions, with annelids being the dominant group (73%) followed by crustaceans (14%). Relationships were evident between community, feeding guilds, and sediment types, which give an indication of communities that can be expected in similar sediments in other areas of the Tropical Eastern Pacific. A study of this scale and level of detail is rare for this biogeographic region and provides a valuable, comprehensive appreciation of the LPA's benthos.

Temporal mangrove dynamics in relation to coastal development in Pacific Panama.

This study assessed the changes in extent of fringing mangrove located in Punta Mala Bay, Panama in relation to coastal development over a period of two decades. Punta Mala Bay was chosen for this study, due to its social importance and its biological significance, as it is one of the few mangrove areas left around Panama City. Fieldwork confirmed the importance of Laguncularia racemosa in the bay, which formed nearly monospecific stands with a large number of seedlings indicating that the forest was rejuvenating. The mangrove was mapped from 1980 to 2002 using digitised aerial photographs and a GIS was used to determine the location and rates of mangrove growth and loss before and after the construction of a road and water treatment works in 1998. The land use maps were produced with an overall accuracy of 83.8%. The user's accuracy of the maps for L. racemosa dominated stands was 89.7%, although the producer's accuracy was lower due to the omission of seedlings on intertidal areas. It was found that the mangrove was spatially dynamic and had grown substantially in the bay at a rate ranging from 6 to 215% per year until the construction commenced. Between 1997 and 2002 there were 100% loss of mangrove in some areas due to the coastal development. The resilience of the dominant species L. racemosa at this locality was shown by the continued growth of two mangrove zones during the construction period 1997-2002, with one zone increasing in area by 61%. The pioneering ability of L. racemosa after disturbance was demonstrated by the development of two new mangrove zones of 498 and 1254 m2 on bare intertidal areas after construction finished. Future mapping and fieldwork could provide information on the development of mangrove communities and their response to reoccurring human impacts.

An assessment of metal contamination in mangrove sediments and leaves from Punta Mala Bay, Pacific Panama.

Due to the growing rate of urbanisation in many tropical coastal areas, there continues to be an increasing concern in relation to the impact of anthropogenic activities on mangrove forests. Punta Mala Bay is located on the Pacific coast of Panama and suffers from intense anthropogenic activities that are potentially harmful to the remaining mangrove forests. Field observations reveal that the mangrove stand within Punta Mala Bay receives high inputs of untreated domestic sewage, storm water run-off and a range of diffuse inputs from shipping activities. Results from analysis of eight metals (Mn, Cu, Zn, Ni, Pb, Fe, Cr, Cd) showed that Fe, Zn and Pb were in concentrations high enough to conclude moderate to serious contamination within the bay, and thus pose the most threat to the regeneration and growth of the mangrove. However, previous biological surveys indicate ongoing mangrove regeneration and domination of stand structure by Laguncularia racemosa, together with high numbers of seedlings and saplings.