A Differential Thermal Lens Spectrometry Method for Trace Detection.

Thermal lens spectroscopy (TLS) is a high-sensitivity method to determine the concentration of light-absorbing species in samples. Here, we implemented a transient configuration of the technique, with a focused pump and a collimated probe beam coaxially propagating. A Fabry-Perot optical resonator is incorporated allowing multi-passing of the probe beam through the sample to enhance sensitivity. We show how the low detection limit of the method can be reduced approximately by half by making differential measurements of the signal at a far field in the center point of the probe beam spot and that obtained by spatial filtering of the same beam, the so-called eclipsed signal. Measurements were performed in test samples of Deyman's organic dye, Strawberry 2143 v.7, dissolved in ethanol. The thermal lens signal measured as a function of the dye concentration in water at the center of the beam was compared with the differential signal resulting from this and the eclipsed beam.

Stomata damage, photosynthesis, and transpiration evaluation of aquatic lirium after ultrasound irradiation.

PURPOSE: Evaluate the structural damage and the changes in the photosynthesis and transpiration rates of aquatic lirium leaves caused by ultrasound (US) irradiation in search of environmentally friendly methodologies for the control of this weed. MATERIALS AND METHODS: Aquatic lirium plants were extracted from Xochimilco water canals in Mexico City. A part of the group of plants was selected for irradiation, and the rest formed the control group. The irradiation plants group was exposed to US irradiation of 17 kHz frequency and 30 W × 4 output power for 2 h, at noon and 25 °C room temperature. The structural analysis was done with a MOTICAM 1 digital camera, 800 × 600 pixels, incorporated into the MOTIC PSM-1000 optical microscope and edited with Motic Images Plus 2.0 ML software. The total stomata density and the damaged stomata density were determined by dividing the numbers of total and damaged stomata by the visual field area (67,917 mm2), respectively. The leaves' photosynthesis and transpiration rates were measured using an LI-6400XT Portable Photosynthesis System. RESULTS: Significant damage was observed in the stomata and epidermal cells, finding that the average ratio between the damaged and total stomata densities as a function of time (days) showed an exponential increase described by a Box-Lucas equation with a saturation value near unity and a maximum rate of change of the density of damaged stomata on zero-day (immediately after irradiation), decreasing as the days go by. The transpiration rate showed a sudden increase during the first hour after irradiation, reaching a maximum of 36% of its value before irradiation. It then quickly fell during the next 6 days and more slowly until the 21st day, decreasing 79.9% of its value before irradiation. The photosynthetic rate showed similar behavior with a 37.7% maximum increment and a 73.6% minimum decrease of its value before irradiation. CONCLUSIONS: The results of structural stomata damage on the ultrasound-irradiated aquatic lirium leaves are consistent with an excessive ultrasound stimulation on stomata's mechanical operation by guard cells that produce the measured significant increase of the photosynthetic and transpiration rates during the first hour after irradiation. The initial high evaporation could alter the water potential gradient, with a possible generation of tensions in the xylem that could cause embolism in their conduits. The loss of xylem conductivity or hydraulic failure would be consistent with the observed significant fall in the photosynthesis and transpiration rates of the aquatic lirium leaves after its sudden rise in the first hour after irradiation.

Toward Sensor Measurement Reliability in Blockchains.

In this work, a secure architecture to send data from an Internet of Things (IoT) device to a blockchain-based supply chain is presented. As is well known, blockchains can process critical information with high security, but the authenticity and accuracy of the stored and processed information depend primarily on the reliability of the information sources. When this information requires acquisition from uncontrolled environments, as is the normal situation in the real world, it may be, intentionally or unintentionally, erroneous. The entities that provide this external information, called Oracles, are critical to guarantee the quality and veracity of the information generated by them, thus affecting the subsequent blockchain-based applications. In the case of IoT devices, there are no effective single solutions in the literature for achieving a secure implementation of an Oracle that is capable of sending data generated by a sensor to a blockchain. In order to fill this gap, in this paper, we present a holistic solution that enables blockchains to verify a set of security requirements in order to accept information from an IoT Oracle. The proposed solution uses Hardware Security Modules (HSMs) to address the security requirements of integrity and device trustworthiness, as well as a novel Public Key Infrastructure (PKI) based on a blockchain for authenticity, traceability, and data freshness. The solution is then implemented on Ethereum and evaluated regarding the fulfillment of the security requirements and time response. The final design has some flexibility limitations that will be approached in future work.

Unraveling the role of relative telomere length and CAG expansion on initial symptoms of juvenile Huntington disease.

BACKGROUND AND PURPOSE: Juvenile-onset Huntington disease (JHD) is defined when symptoms initiate before 20 years of age. Mechanisms explaining differences between juvenile and adult onset are not fully understood. Our aim was to analyze the distribution of initial symptoms in a cohort of JHD patients and to explore its relationship with CAG expansion and relative telomere length (RTL). METHODS: A total of 84 JHD patients and 54 neurologically healthy age and sex matched individuals were recruited. CAG length was measured by southern blot or triplet repeat primed polymerase chain reaction. RTL was measured using the Cawthon method. RESULTS: Psychiatric symptoms were most frequent when considering the entire cohort. When divided into onset before or after 10 years, cognitive symptoms were more frequent in the youngest, whilst in the older group psychiatric symptoms prevailed. Motor symptoms were rare in the youngest and epilepsy was observed only in this group as well as a larger CAG expansion. RTL analysis revealed shorter telomeres in JHD patients compared to controls. This difference is not influenced by age, initial symptoms, time of disease or CAG expansion. CONCLUSIONS: To the best of our knowledge this is the largest cohort of JHD patients reported. Psychiatric manifestations deserve special attention when JHD is suspected and epilepsy is especially important in the youngest patients. Initial symptoms seem to be influenced by CAG expansion and therefore age of onset. RTL is significantly reduced in JHD patients which can influence the characteristic neurodegeneration of JHD and contribute to the clinical discrepancy between adult and juvenile forms of Huntington disease.

RESEKRA: Remote Enrollment Using SEaled Keys for Remote Attestation.

This paper presents and implements a novel remote attestation method to ensure the integrity of a device applicable to decentralized infrastructures, such as those found in common edge computing scenarios. Edge computing can be considered as a framework where multiple unsupervised devices communicate with each other with lack of hierarchy, requesting and offering services without a central server to orchestrate them. Because of these characteristics, there are many security threats, and detecting attacks is essential. Many remote attestation systems have been developed to alleviate this problem, but none of them can satisfy the requirements of edge computing: accepting dynamic enrollment and removal of devices to the system, respecting the interrupted activity of devices, and last but not least, providing a decentralized architecture for not trusting in just one Verifier. This security flaw has a negative impact on the development and implementation of edge computing-based technologies because of the impossibility of secure implementation. In this work, we propose a remote attestation system that, through using a Trusted Platform Module (TPM), enables the dynamic enrollment and an efficient and decentralized attestation. We demonstrate and evaluate our work in two use cases, attaining acceptance of intermittent activity by IoT devices, deletion of the dependency of centralized verifiers, and the probation of continuous integrity between unknown devices just by one signature verification.

Characterization of Cuban and Brazilian natural zeolites by photoacoustic spectroscopy and electron paramagnetic resonance.

This report describes the photoacoustic and electron paramagnetic resonance investigations of Brazilian and Cuban zeolites. Photoacoustic optical absorption measurements indicate the presence of iron (Fe3+) ions with their respective transition bands for both zeolites. Two species of manganese (Mn2+ and Mn3+) were identified in the Cuban sample and the electronic transitions assigned. Iron and manganese ions were confirmed through nonradiative relaxation (τ) and characteristic diffusion (τß) times evaluation, whose values were found to be τBRA = 5.40 ms, τCUB = 4.60 ms, τßBRA = 387 µs and τßCUB = 305 µs. Crystal field (Dq-BRA/Dq-CUB = 1048 cm-1/945 cm-1) plus Racah (B-BRA/B-CUB = 457 cm-1/813 cm-1 and C-BRA/C-CUB = 3655 cm-1/2496 cm-1) parameters were assessed as well. Paramagnetic resonance corroborated Fe3+ ions present in the Brazilian zeolite occupying sites showing axial and/or rhombic symmetry distortions. For the Cuban sample, results reveal the characteristic hyperfine sextet lines of Mn2+ overlapping the Fe3+ line. Values of Landé factor and isotropic hyperfine splitting constant were found to be 2.0 and 9.7 mT, respectively. This tells us that the Mn2+ lies in octahedral symmetry probably replacing calcium ions and point towards an ionic bonding character of the Mn2+ and its surroundings.

circRNA Regulates Dopaminergic Synapse, MAPK, and Long-term Depression Pathways in Huntington Disease.

Huntington disease (HD) is the most common neurogenetic disorder caused by expansion of the CAG repeat in the HTT gene; nevertheless, the molecular bases of the disease are not fully understood. Non-coding RNAs have demonstrated to be involved in the physiopathology of HD. However, the role of circRNAs has not been investigated. The aim of this study was to identify the circRNAs with differential expression in a murine cell line model of HD and to identify the biological pathways regulated by the differentially expressed circRNAs. CircRNA expression was analyzed through a microarray, which specifically detects circular species of RNA. The expression patterns between a murine cell line expressing mutant Huntingtin and cells expressing wild-type Huntingtin were compared. We predicted the miRNAs with binding sites for the differentially expressed circRNAs and the corresponding target genes for those miRNAs. Using the target genes, we performed a function enrichment analysis. We identified 23 circRNAs differentially expressed, 19 downregulated and four upregulated. Most of the downregulated circRNAs derive from the Rere gene. The dopaminergic synapse, MAPK, and long-term depression pathways were significantly enriched. The three identified pathways have been previously associated with the physiopathology of HD. The understanding of the circRNA-miRNA-mRNA network involved in the molecular mechanisms driving HD can lead us to identify novel biomarkers and potential therapeutic targets. To the best of our knowledge, this is the first study analyzing circRNAs in a model of Huntington disease.

Rodlike Particles of Polydopamine-CdTe Quantum Dots: An Actuator As a Photothermal Agent and Reactive Oxygen Species-Generating Nanoplatform for Cancer Therapy.

Herein, novel rodlike CdTe@MPA-PDA particles based on polydopamine (PDA) loaded with CdTe quantum dots (QDs) capped with mercaptopropionic acid (CdTe@MPA QDs) with atypical chemical features are evaluated as a potential actuator for photothermal therapy and oxidative stress induction. Under mild conditions established for the safe and efficient use of lasers, temperature increases of 10.2 and 7.8 °C, photothermal conversion efficiencies of 37.7 and 26.2%, and specific absorption rates of 99 and 69 W/g were obtained for CdTe@MPA-PDA and traditional PDA particles in water, respectively. The particles were set to interact with the human breast adenocarcinoma cell line MDA-MB-231. A significant cellular uptake with the majority of particles colocalized into the lysosomes was obtained at a concentration of 100 µg/mL after 24 h. Additionally, CdTe@MPA-PDA and CdTe@MPA QDs showed significantly different internalization levels and loading kinetics profiles. For the first time, the thermal lens technique was used to demonstrate the stability of particle-like CdTe@MPA-PDA after heating at pH 7 and their migration within the heating region due to the thermodiffusion effect. However, under acidic pH-type lysosomes, a performance decrease in heating was observed, and the chemical feature of the particles was damaged as well. Besides, the internalized rodlike CdTe@MPA-PDA notably enhanced the induction of oxidative stress compared with PDA alone and CdTe@MPA QDs in MDA-MB-231 cells initiating apoptosis. Combining these effects suggests that after meticulous optimizations of the conditions, the CdTe@MPA-PDA particles could be used as a photothermal agent under mild conditions and short incubation time, allowing cytoplasmatic subcellular localization. On the other hand, the same particles act as cell killers by triggering reactive oxygen species after a longer incubation time and lysosomal subcellular localization due to the pH effect on the chemical morphology features of the CdTe@MPA-PDA particles.

Ultrasound irradiation effect on photosynthesis and transpiration of aquatic lirium plants.

PURPOSE: To find possible causes of the photobaric response decrease in photoacoustic measurements on Aquatic Lirium plants after ultrasonic irradiations reported elsewhere contributing to understanding the effect of ultrasonic irradiation on them and searching for environmentally friendly methodologies to control this weed. MATERIALS AND METHODS: The plants were extracted from their natural habitat in Xochimilco water canals, Mexico City. The irradiations on the plants were carried out to 2 hours exposure time, 17 kHz frequency, and 30 W x 4 output power. We used the photoacoustic spectroscopy technique at room temperature in the range of 400-750 nm to analyze the optical absorption response of photosynthetic pigments before and after ultrasonic irradiations. To monitor the leave transpiration rate, we used an LI-COR 6400XT portable system, expressed in units of mols H2O per second per unit area of the leaf surface. RESULTS: We obtained a significant decrease of the chlorophylls bands amplitude in the photoacoustic spectroscopy spectra and a drastic reduction in the leaves transpiration rate of irradiated plants that depends on the time elapsed after irradiation. Remarkable physical changes in the leaves and petioles of the irradiated plants were observed with the naked eye. CONCLUSIONS: A significantly decreasing photosynthesis and transpiration in the leaves of the irradiated lirium plants were obtained. Together with the observed physical changes in the leaves and petioles, these results suggest an alteration in the water transport and the overall gas exchange mechanisms affecting the irradiated leaves' transpiration and photosynthesis processes that agree with the photobaric response decrease reported elsewhere. Due to the fundamental role of stomata in these mechanisms, it is suggested, as a possible cause, that the ultrasonic-induced disruption of stomata's mechanical operation by guard cells prevents them from performing their function normally. A hypothesis to be confirmed in future studies, for which a line of action is proposed.

A multi-thermal-lens approach to evaluation of multi-pass probe beam configuration in thermal lens spectrometry.

In this work, a recently proposed thermal lens instrument based on multi-pass probe beam concept is investigated and described as a multi-thermal-lens equivalent system. A simulation of the photothermal lens signal formation in a multi-thermal-lens equivalent configuration of the system is performed and validated by comparing the experimental signals of single, dual and ten-pass configurations to theoretically calculated values. The theoretically predicted enhancement of the signal is 9 to 10-fold for a weak thermal lens when comparing the ten-pass configuration with the conventional single-pass thermal lens system. Experimentally achieved signal enhancement in the ten-pass system is 8.3 for pure ethanol sample and between 8 and 9 for solutions with different concentrations of the Fe(II) - 1,10-Phenanthroline complex. Additionally, a value of 9.1 was calculated as the ratio of the slopes of the calibration lines obtained using the ten-pass and single-pass configurations. The achieved limit of detection for determination of Fe(II), in the ten-pass configuration, was 0.4 µgL-1, with a relative standard deviation around 4.5%, which compares favorably with previously reported results for TLS determination of Fe(II) in thin samples using low excitation power. For the multi-pass configuration the linear range of measurement is reduced when compared to the single-pass configuration. This is explained by the theoretical analysis of the photothermal signal under multi-pass condition, which shows the important contribution of nonlinear term in theoretical expression for the photothermal signal. The ten-pass configuration, which is presented and validated experimentally for the first time, offers important signal enhancement needed in recently developed TLS instruments with tunable, low power excitation sources.

Trace detection and photothermal spectral characterization by a tuneable thermal lens spectrometer with white-light excitation.

In the thermal lens experimental set-up we replaced the commonly employed pump laser by a halogen lamp, combined with an interference filter, providing a tuneable, nearly monochromatic pump source over the range of wavelengths 430-710 nm. Counter-propagating pump and probe beams are used and a 1 mm path-length sample cell together with the interference filter makes an optical cavity, providing amplification of the thermal lens signal, which leads to enhancement of the measurement sensitivity, and enables detection of absorbances on the order of 5 × 10-6. Amplified thermal lens signal allows us to replace the typical lock-in amplifier and digital oscilloscope with a silicon photodetector, Arduino, and a personal computer, offering the possibility for a compact, robust and portable device, useful for in-field absorption measurements in low concentration or weakly absorbing species. The use of a white light source for optical pumping, an interference filter for wavelength selection and direct diagnostic of the thermal lens signal increase the versatility of the instrument and simplifies substantially the experimental setup. Determination of Fe(II) concentrations at parts per billion levels was performed by the described white-light thermal lens spectrophotometer and the absorption spectrum for 50 µgL-1 Fe(II)-1,10-phenanthroline was well reproduced with an average measurement precision of 4%. The obtained limits of detection and quantitation of Fe(II) determination at 510 nm are 3 µgL-1 and 11 µgL-1, respectively. The calibration curve was linear in the concentration range of LOQ-500 µgL-1 with reproducibility between 2% and 6%, confirming that this instrument provides good spectrometric capabilities such as high sensitivity, tuneability and good reproducibility. In addition, the versatility of the instrument was demonstrated by recording the photothermal spectrum of gold nanostructured material and determination of excitation wavelength with most efficient optical to thermal energy conversion, which differs considerably (cca 100 nm) from the absorption maximum of the investigated sample.

Absorption Spectra of Ethanol and Water Using a Photothermal Lens Spectrophotometer.

In this work we report on the absorption spectra of ethanol and water in the region 430-700 nm using a homemade halogen lamp-based photothermal lens spectrophotometer with a multipass probe-beam configuration. The spectra also include well resolved, higher absorption overtones. The instrument achieves high sensitivity due to multiple reflections within the optical cavity containing the sample. Finally, an Arduino board was used for collecting and digitizing the signal, thus enabling a more compact device.

Genomic Justice and Imagined Communities.

In this issue of the Hastings Center Report, Maya Sabatello and Paul Appelbaum explore the assumptions about community embedded in the U.S. Precision Medicine Initiative, which aims to recruit donor-partners who reflect the United States' racial and ethnic diversity. As Sabatello and Appelbaum discuss, the initiative is like other national biobanking efforts in bringing to life an imagined genetic community in need of critical attention, and given the public-private forms of partnership at the heart of the PMI, such efforts could become avenues to deepen existing inequalities rather than to alleviate them. The notion of justice has underwritten debates about genomic medicine, informed consent, citizenship, benefit sharing, and profit making since the first national biobanking project emerged at the dawn of the twenty-first century. In a paradigmatic case, the creation, by an Icelandic company, of the deCODE genomic biobank opened up fierce debates about the proper relationship between public good and private gain and became the first global example of the economic and political implications that imagined genetic communities could have in our shared future. In Mexico, in 2001, the Icelandic case fueled a policy agenda to deal with global health justice and the prospects of a future market-based colonialism predicated on the intimate knowledge of DNA.

Encapsulation efficiency of CdSe/ZnS quantum dots by liposomes determined by thermal lens microscopy.

In this study the encapsulation of core shell carboxyl CdSe/ZnS quantum dots (QDs) by phospholipids liposome complexes is presented. It makes the quantum dots water soluble and photo-stable. Fluorescence self-quenching of the QDs inside the liposomes was observed. Therefore, the thermal lens microscopy (TLM) was found to be an useful tool for measuring the encapsulation efficiency of the QDs by the liposomes, for which an optimum value of 36% was determined. The obtained limit of detection (LOD) for determining QDs concentration by TLM was 0.13 nM. Moreover, the encapsulated QDs showed no prominent cytotoxicity toward Breast cancer cells line MDA-MB-231. This study was supported by UV-visible spectroscopy, high resolution transmission electron microscopy (HRTEM) and dynamic light scattering measurements (DLS).

Building the genomic nation: 'Homo Brasilis' and the 'Genoma Mexicano' in comparative cultural perspective.

This article explores the relationship between genetic research, nationalism and the construction of collective social identities in Latin America. It makes a comparative analysis of two research projects--the 'Genoma Mexicano' and the 'Homo Brasilis'--both of which sought to establish national and genetic profiles. Both have reproduced and strengthened the idea of their respective nations of focus, incorporating biological elements into debates on social identities. Also, both have placed the unifying figure of the mestizo/mestiço at the heart of national identity constructions, and in so doing have displaced alternative identity categories, such as those based on race. However, having been developed in different national contexts, these projects have had distinct scientific and social trajectories: in Mexico, the genomic mestizo is mobilized mainly in relation to health, while in Brazil the key arena is that of race. We show the importance of the nation as a frame for mobilizing genetic data in public policy debates, and demonstrate how race comes in and out of focus in different Latin American national contexts of genomic research, while never completely disappearing.

Colombian forensic genetics as a form of public science: The role of race, nation and common sense in the stabilization of DNA populations.

Abstract This article examines the role that vernacular notions of racialized-regional difference play in the constitution and stabilization of DNA populations in Colombian forensic science, in what we frame as a process of public science. In public science, the imaginations of the scientific world and common-sense public knowledge are integral to the production and circulation of science itself. We explore the origins and circulation of a scientific object--'La Tabla', published in Paredes et al. and used in genetic forensic identification procedures--among genetic research institutes, forensic genetics laboratories and courtrooms in Bogotá. We unveil the double life of this central object of forensic genetics. On the one hand, La Tabla enjoys an indisputable public place in the processing of forensic genetic evidence in Colombia (paternity cases, identification of bodies, etc.). On the other hand, the relations it establishes between 'race', geography and genetics are questioned among population geneticists in Colombia. Although forensic technicians are aware of the disputes among population geneticists, they use and endorse the relations established between genetics, 'race' and geography because these fit with common-sense notions of visible bodily difference and the regionalization of race in the Colombian nation.

Explaining the visible and the invisible: Public knowledge of genetics, ancestry, physical appearance and race in Colombia.

Using data from focus groups conducted in Colombia, we explore how educated lay audiences faced with scenarios about ancestry and genetics draw on widespread and dominant notions of nation, race and belonging in Colombia to ascribe ancestry to collectivities and to themselves as individuals. People from a life sciences background tend to deploy idioms of race and genetics more readily than people from a humanities and race-critical background. When they considered individuals, people tempered or domesticated the more mechanistic explanations about racialized physical appearance, ancestry and genetics that were apparent at the collective level. Ideas of the latency and manifestation of invisible traits were an aspect of this domestication. People ceded ultimate authority to genetic science, but deployed it to work alongside what they already knew. Notions of genetic essentialism co-exist with the strategic use of genetic ancestry in ways that both fix and unfix race. Our data indicate the importance of attending to the different epistemological stances through which people define authoritative knowledge and to the importance of distinguishing the scale of resolution at which the question of diversity is being posed.

The law of genomic sovereignty and the protection of "Mexican genetic patrimony".

We present a socio-legal analysis of the policy agenda known as genomic sovereignty in Mexico--in which the notion was first coined--and its translation into a national law of health aimed at regulating population genomics research in the country. Based in more than 2 years of participant observation we sustain that the notion of genomic sovereignty, aimed at protecting the "unique" genetic patterns of populations needs to be critically reassessed. The main problem with such notion is that there are no scientifically sound ways to delimit the genetic "uniqueness" of any population in the world. Arising from this dilemma it becomes increasingly clear that the patrimonial doctrines that have been used to regulate population genomics in Mexico are inoperative, and rather than creating a legal environment in which medical genomics can become a national public good, it has created a law that has been used to monopolise human genomic research in the country; making blood samples and data tool for dispute amongst scientific elites.

Discrimination of organic coffee via Fourier transform infrared-photoacoustic spectroscopy.

BACKGROUND: Procedures for the evaluation of the origin and quality of ground and roasted coffee are constantly needed for the associated industry due to complexity of the related market. Conventional Fourier transform infrared (FTIR) spectroscopy can be used for detecting changes in functional groups of compounds, such as coffee. However, dispersion, reflection and non-homogeneity of the sample matrix can cause problems resulting in low spectral quality. On the other hand, sample preparation frequently takes place in a destructive way. To overcome these difficulties, in this work a photoacoustic cell has been adapted as a detector in a FTIR spectrophotometer to perform a study of roasted and ground coffee from three varieties of Coffea arabica grown by organic and conventional methods. RESULTS: Comparison between spectra of coffee recorded by FTIR-photoacoustic spectrometry (PAS) and by FTIR spectrophotometry showed a better resolution of the former method, which, aided by principal components analysis, allowed the identification of some absorption bands that allow the discrimination between organic and conventional coffee. CONCLUSION: The results obtained provide information about the spectral behavior of coffee powder which can be useful for establishing discrimination criteria. It has been demonstrated that FTIR-PAS can be a useful experimental tool for the characterization of coffee.