Contribution of glucan-binding protein A to firm and stable biofilm formation by Streptococcus mutans.

Glucan-binding proteins (Gbps) of Streptococcus mutans, a major pathogen of dental caries, mediate the binding of glucans synthesized from sucrose by the action of glucosyltransferases (GTFs) encoded by gtfB, gtfC, and gtfD. Several stress proteins, including DnaK and GroEL encoded by dnaK and groEL, are related to environmental stress tolerance. The contribution of Gbp expression to biofilm formation was analyzed by focusing on the expression levels of genes encoding GTFs and stress proteins. Biofilm-forming assays were performed using GbpA-, GbpB-, and GbpC-deficient mutant strains and the parental strain MT8148. The expression levels of gtfB, gtfC, gtfD, dnaK, and groEL were evaluated by reverse transcription-quantitative polymerase chain reaction (RT-qPCR). Furthermore, the structure of biofilms formed by these Gbp-deficient mutant strains was observed using confocal laser scanning microscopy (CLSM). Biofilm-forming assay findings demonstrated that the amount formed by the GbpA-deficient mutant strain (AD1) was nearly the same as that by the parental strain, while the GbpB- and GbpC-deficient mutant strains produced lower amounts than MT8148. Furthermore, RT-qPCR assay results showed that the expressions of gtfB, dnaK, and groEL in AD1 were elevated compared with MT8148. CLSM also revealed that the structure of biofilm formed by AD1 was prominently different compared with that formed by the parental strain. These results suggest that a defect in GbpA influences the expression of genes controlling biofilm formation, indicating its importance as a protein for firm and stable biofilm formation.

Approach to thermal equilibrium in atomic collisions.

The energy relaxation of fast atoms moving in a thermal bath gas is explored experimentally and theoretically. Two time scales characterize the equilibration, one a short time, in which the isotropic energy distribution profile relaxes to a Maxwellian shape at some intermediate effective temperature, and the second, a longer time in which the relaxation preserves a Maxwellian distribution and its effective temperature decreases continuously to the bath gas temperature. The formation and preservation of a Maxwellian distribution does not depend on the projectile to bath gas atom mass ratio. This two-stage behavior arises due to the dominance of small angle scattering and small energy transfer in the collisions of neutral particles. Measurements of the evolving Doppler profiles of emission from excited initially energetic nitrogen atoms traversing bath gases of helium and argon confirm the theoretical predictions.

Kinetics and mechanism of the reaction of chlorine atoms with n-pentanal.

The kinetics and mechanism of the reaction Cl + CH3(CH2)3CHO was investigated using absolute (PLP-LIF) and relative rate techniques in 8 Torr of argon or 800-950 Torr of N2 at 295 +/- 2 K. The absolute rate experiments gave k[Cl+CH3(CH2)3CHO] = (2.31 +/- 0.35) x 10(-10) in 8 Torr of argon, while relative rate experiments gave k[Cl+CH3(CH2)3CHO] = (2.24 +/- 0.20) x 10(-10) cm3 molecule(-1) s(-1) in 800-950 Torr of N2. Additional relative rate experiments gave k[Cl+CH3(CH2)3C(O)Cl] = (8.74 +/- 1.38) x 10(-11) cm3 molecule-1 s(-1) in 700 Torr of N2. Smog chamber Fourier transform infrared (FTIR) techniques indicated that the acyl-forming channel accounts for 42 +/- 3% of the reaction. The results are discussed with respect to the literature data and the importance of long range (greater than or equal to two carbon atoms along the aliphatic chain) effects in determining the reactivity of organic molecules toward chlorine atoms.

Atmospheric chemistry of CF3CH=CH2 and C4F9CH=CH2: products of the gas-phase reactions with Cl atoms and OH radicals.

FTIR-smog chamber techniques were used to study the products of the Cl atom and OH radical initiated oxidation of CF3CH=CH2 in 700 Torr of N2/O2, diluent at 296 K. The Cl atom initiated oxidation of CF3CH=CH2 in 700 Torr of air in the absence of NOx gives CF3C(O)CH2Cl and CF3CHO in yields of 70+/-5% and 6.2+/-0.5%, respectively. Reaction with Cl atoms proceeds via addition to the >C=C< double bond (74+/-4% to the terminal and 26+/-4% to the central carbon atom) and leads to the formation of CF3CH(O)CH2Cl and CF3CHClCH2O radicals. Reaction with O2 and decomposition via C-C bond scission are competing loss mechanisms for CF3CH(O)CH2Cl radicals, kO2/kdiss=(3.8+/-1.8)x10(-18) cm3 molecule-1. The atmospheric fate of CF3CHClCH2O radicals is reaction with O2 to give CF3CHClCHO. The OH radical initiated oxidation of CxF2x+1CH=CH2 (x=1 and 4) in 700 Torr of air in the presence of NOx gives CxF2x+1CHO in a yield of 88+/-9%. Reaction with OH radicals proceeds via addition to the >C=C< double bond leading to the formation of CxF2x+1C(O)HCH2OH and CxF2x+1CHOHCH2O radicals. Decomposition via C-C bond scission is the sole fate of CxF2x+1CH(O)CH2OH and CxF2x+1CH(OH)CH2O radicals. As part of this work a rate constant of k(Cl+CF3C(O)CH2Cl)=(5.63+/-0.66)x10(-14) cm3 molecule-1 s-1 was determined. The results are discussed with respect to previous literature data and the possibility that the atmospheric oxidation of CxF2x+1CH=CH2 contributes to the observed burden of perfluorocarboxylic acids, CxF2x+1COOH, in remote locations.

A kinetics and mechanistic study of the OH and NO2 initiated oxidation of cyclohexa-1,3-diene in the gas phase.

The kinetics and products of the OH and NO2-initiated oxidation of cyclohexa-1,3-diene have been investigated at 296 K and 700 Torr using long path FTIR spectroscopy. Relative rate methods were employed using the photolysis of cyclohexa-1,3-diene/CH3ONO/NO/air mixtures to measure kappa(OH + cyclohexa-1,3-diene) = (1.68 +/- 0.43) x 10(-10) cm3 molecule(-1) s(-1). From the pseudo-first order decay of cyclohexa-1,3-diene in the presence of excess NO2, a value of kappa(NO2 + cyclohexa-1,3-diene) = (1.75 +/- 0.15) x 10(-18) cm3 molecule)-1) s(-1) was derived. An upper limit of kappa < or = 7 x 10(-21) cm3 molecule(-1) s(-1) was established for the reaction of NO with cyclohexa-1,3-diene. Benzene was observed as a product of both the OH and NO2 initiated oxidation, providing evidence of H atom abstraction in both reactions. Assuming the reaction of cyclohexadienyl radicals (C6H7) with O2 produces benzene as the sole organic product, the results are consistent with abstraction channel branching ratios of (8.1 +/- 0.2)% and (1.5 +/- 0.4)%, respectively. The results also indicate that C6H7 reacts with NO2, with a relative rate coefficient kappa(C6H7 + NO2)/kappa(C6H7 +O2) = (1.8 +/- 0.5) x 10(5), and that this partially forms benzene, with a branching ratio of (27 +/- 7)%. The stoichiometry and products of the NO2 reaction were investigated in the absence of O2, in the presence of O2, and in the presence of O2 and NO. Reaction mechanisms consistent with the observations are presented. In the presence of NO and O2, the NO2-initiated chemistry leads to NO-to-NO2 conversion, and the formation of HOx radicals in significant yield, (0.79 +/- 0.05), such that cyclohexa-1,3-diene removal occurs by reaction with both NO2 and OH. HCOOH was detected as a product in this system, providing evidence for significant formation of stabilised C6 alpha-hydroxyperoxy radicals from the OH-initiated chemistry, and their subsequent reaction with NO. An estimate of ca. 500-1000 s(-1) is made for their decomposition rate, based on the [NO]-dependence of the HCOOH yields. The implications of the results are discussed within the context of the atmospheric chemistry of conjugated dienes.

Above-threshold dissociative ionization in the intermediate intensity regime.

The problem of dissociative ionization at intermediate intensities ( 10(10)-10(12) W cm(-2)) was studied using the example of I2 and the technique of velocity map imaging. Several new phenomena were observed, including a continuous distribution of recoil energies peaked at zero-kinetic energy, a set of constant dissociative ionic states, and strong anisotropy of the fragment velocity distribution that is diminished by intermediate resonances.

High-sensitivity instrument for measuring atmospheric NO2.

We report on the development of a high-sensitivity detection system for measuring atmospheric NO2 using a laser-induced fluorescence (LIF) technique around 440 nm. A tunable broad-band optical parametric oscillator laser pumped by the third harmonic of a Nd:YAG laser is used as a fluorescence excitation source. The laser wavelength is tuned at peak and bottom wavelengths around 440 nm alternatively, and the difference signal at the two wavelengths is used to extract the NO2 concentration. This procedure can give a good selectivity for NO2 and avoid interferences of fluorescent or particulate species other than NO2 in the sample air. The NO2 instrument developed has a sensitivity of 30 pptv in 10 s and S/N = 2. The practical performance of the detection system is tested in the suburban area for 24 h. The intercomparisons between the LIF instrument and a photofragmentation chemiluminescence (PF-CL) instrument have been performed under laboratory conditions. The correlation between the two instruments is measured up to 1000 pptv. A good linear relationship between the LIF measurements and the PF-CL measurements is obtained.

Isotope (18)O/(16)O Ratio Measurements of Water Vapor by use of Photoacoustic Spectroscopy.

We applied a photoacoustic spectroscopy technique to isotope ratio measurements of (16)O and (18)O in water-vapor samples, using a pulsed tunable dye laser pumped by a Nd:YAG laser. The fourth overtone bands (4nu(OH)) of water molecules near 720 nm were investigated. We identified the absorption lines of H(2)(16)O and H(2)(18)O in the photoacoustic spectra that we measured by using an (18)O-enriched water sample and the HITRAN database. We measured the difference in the (18)O/(16)O isotope ratios for normal distilled water and Antarctic ice, using the photoacoustic method. The value obtained for the difference between the two samples is delta(18)O = -32 ? 16 per thousand, where the indicated deviation was a 1varsigma value among 240-s measurements, whereas the value measured with a conventional isotope mass spectrometer was delta(18)O = -28 ? 2 per thousand. This method is demonstrated to have the potential of a transportable system for in situ and quick measurements of the H(2)(18)O/H(2)(16)O ratio in the environment.

Beam monitoring system for simultaneous measurement of near and far field patterns in high repetition rate KrF lasers.

A computer-controlled beam monitoring system for KrF excimer lasers was developed for simultaneous measurement of near and far field patterns and pointing stability of the laser beam at a 250 Hz repetition rate. The system and results obtained are described.