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1.
IEEE Trans Cybern ; 54(8): 4475-4488, 2024 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-38190687

RESUMO

The goal of constrained multiobjective evolutionary optimization is to obtain a set of well-converged and well-distributed feasible solutions. To achieve this goal, a delicate tradeoff must be struck among feasibility, diversity, and convergence. However, balancing these three elements simultaneously through a single tradeoff model is nontrivial, mainly because the significance of each element varies in different evolutionary phases. As an alternative approach, we adapt distinct tradeoff models in various phases and introduce a novel algorithm named adaptive tradeoff model with reference points (ATM-R). In the infeasible phase, ATM-R takes the tradeoff between diversity and feasibility into account, aiming to move the population toward feasible regions from diverse search directions. In the semi-feasible phase, ATM-R promotes the transition from "the tradeoff between feasibility and diversity" to "the tradeoff between diversity and convergence." This transition is instrumental in discovering an adequate number of feasible regions and accelerating the search for feasible Pareto optima in succession. In the feasible phase, ATM-R places an emphasis on balancing diversity and convergence to obtain a set of feasible solutions that are both well-converged and well-distributed. It is worth noting that the merits of reference points are leveraged in ATM-R to accomplish these tradeoff models. Also, in ATM-R, a multiphase mating selection strategy is developed to generate promising solutions beneficial to different evolutionary phases. Systemic experiments on a diverse set of benchmark test functions and real-world problems demonstrate that ATM-R is effective. When compared to eight state-of-the-art constrained multiobjective optimization evolutionary algorithms, ATM-R consistently demonstrates its competitive performance.

2.
Brief Bioinform ; 24(4)2023 07 20.
Artigo em Inglês | MEDLINE | ID: mdl-37429577

RESUMO

In modern precision medicine, it is an important research topic to predict cancer drug response. Due to incomplete chemical structures and complex gene features, however, it is an ongoing work to design efficient data-driven methods for predicting drug response. Moreover, since the clinical data cannot be easily obtained all at once, the data-driven methods may require relearning when new data are available, resulting in increased time consumption and cost. To address these issues, an incremental broad Transformer network (iBT-Net) is proposed for cancer drug response prediction. Different from the gene expression features learning from cancer cell lines, structural features are further extracted from drugs by Transformer. Broad learning system is then designed to integrate the learned gene features and structural features of drugs to predict the response. With the capability of incremental learning, the proposed method can further use new data to improve its prediction performance without retraining totally. Experiments and comparison studies demonstrate the effectiveness and superiority of iBT-Net under different experimental configurations and continuous data learning.


Assuntos
Antineoplásicos , Neoplasias , Humanos , Neoplasias/tratamento farmacológico , Neoplasias/genética , Antineoplásicos/farmacologia , Antineoplásicos/uso terapêutico , Linhagem Celular , Educação Continuada , Medicina de Precisão
3.
IEEE Trans Cybern ; 52(7): 6518-6530, 2022 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-33284761

RESUMO

As an effective method for clustering applications, the clustering ensemble algorithm integrates different clustering solutions into a final one, thus improving the clustering efficiency. The key to designing the clustering ensemble algorithm is to improve the diversities of base learners and optimize the ensemble strategies. To address these problems, we propose a clustering ensemble framework that consists of three parts. First, three view transformation methods, including random principal component analysis, random nearest neighbor, and modified fuzzy extension model, are used as base learners to learn different clustering views. A random transformation and hybrid multiview learning-based clustering ensemble method (RTHMC) is then designed to synthesize the multiview clustering results. Second, a new random subspace transformation is integrated into RTHMC to enhance its performance. Finally, a view-based self-evolutionary strategy is developed to further improve the proposed method by optimizing random subspace sets. Experiments and comparisons demonstrate the effectiveness and superiority of the proposed method for clustering different kinds of data.


Assuntos
Algoritmos , Aprendizagem , Análise por Conglomerados
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