Controllability and Robustness of Functional and Structural Connectomic Networks in Glioma Patients.

Previous studies suggest that the topological properties of structural and functional neural networks in glioma patients are altered beyond the tumor location. These alterations are due to the dynamic interactions with large-scale neural circuits. Understanding and describing these interactions may be an important step towards deciphering glioma disease evolution. In this study, we analyze structural and functional brain networks in terms of determining the correlation between network robustness and topological features regarding the default-mode network (DMN), comparing prognostically differing patient groups to healthy controls. We determine the driver nodes of these networks, which are receptive to outside signals, and the critical nodes as the most important elements for controllability since their removal will dramatically affect network controllability. Our results suggest that network controllability and robustness of the DMN is decreased in glioma patients. We found losses of driver and critical nodes in patients, especially in the prognostically less favorable IDH wildtype (IDHwt) patients, which might reflect lesion-induced network disintegration. On the other hand, topological shifts of driver and critical nodes, and even increases in the number of critical nodes, were observed mainly in IDH mutated (IDHmut) patients, which might relate to varying degrees of network plasticity accompanying the chronic disease course in some of the patients, depending on tumor growth dynamics. We hereby implement a novel approach for further exploring disease evolution in brain cancer under the aspects of neural network controllability and robustness in glioma patients.

Structural Target Controllability of Brain Networks in Dementia.

Controlling the dynamics of large-scale neural circuits might play an important role in aberrant cognitive functioning as found in Alzheimer's disease (AD). Analyzing the disease trajectory changes is of critical relevance when we want to get an understanding of the neurodegenerative disease evolution. Advanced control theory offers a multitude of techniques and concepts that can be easily translated into the dynamic processes governing disease evolution at the patient level, treatment response evaluation and revealing some central mechanisms in brain connectomic networks that drive alterations in these diseases. Two types of controllability - the modal and average controllability - have been applied in brain research to provide the mechanistic explanation of how the brain operates in different cognitive states. In this paper, we apply the concept of target controllability to structural (MRI) connectivity graphs for control (CN), mild cognitive impairment (MCI) and Alzheimer's disease (AD) subjects. In target controllability, only a subset of the network states are steered towards a desired objective. We show the graph-theoretic necessary and sufficient conditions for the structural target controllability of the above-mentioned brain networks and demonstrate that only local topological information is needed for its verification. Certain areas of the brain and corresponding to nodes in the brain network graphs can act as drivers and move the system (brain) into specific states of action. We select first the drivers that ensures the controllability of these networks and since they do not represent the smallest set, we employ the concept of structural target controllability to determine those nodes that can steer a collection of states being representative for the transitions between CN, MCI and AD networks. Our results applied on structural brain networks in dementia suggest that this novel technique can accurately describe the different node roles in controlling trajectories of brain networks and being relevant for disease evolution.

Data analysis techniques in phosphoproteomics.

The interpretation of phosphoproteomics data sets is crucial for generating hypotheses that guide therapeutic solutions, yet not many techniques have been applied to this type of analysis. This paper intends to give an overview about the two main standard techniques that can be applied to the analysis of these large scale data sets. These are data-driven or exploratory techniques based on a statistical model and topology-driven methods that analyze the signaling network from a dynamical standpoint. While employing different paradigms, these algorithms will detect unique "fingerprints" by revealing the intricate interactions at the proteome level and will support the experimental environment for novel therapeutics for many diseases.

A low cost matching motion estimation sensor based on the NIOS II microprocessor.

This work presents the implementation of a matching-based motion estimation sensor on a Field Programmable Gate Array (FPGA) and NIOS II microprocessor applying a C to Hardware (C2H) acceleration paradigm. The design, which involves several matching algorithms, is mapped using Very Large Scale Integration (VLSI) technology. These algorithms, as well as the hardware implementation, are presented here together with an extensive analysis of the resources needed and the throughput obtained. The developed low-cost system is practical for real-time throughput and reduced power consumption and is useful in robotic applications, such as tracking, navigation using an unmanned vehicle, or as part of a more complex system.

FPGA-based multimodal embedded sensor system integrating low- and mid-level vision.

Motion estimation is a low-level vision task that is especially relevant due to its wide range of applications in the real world. Many of the best motion estimation algorithms include some of the features that are found in mammalians, which would demand huge computational resources and therefore are not usually available in real-time. In this paper we present a novel bioinspired sensor based on the synergy between optical flow and orthogonal variant moments. The bioinspired sensor has been designed for Very Large Scale Integration (VLSI) using properties of the mammalian cortical motion pathway. This sensor combines low-level primitives (optical flow and image moments) in order to produce a mid-level vision abstraction layer. The results are described trough experiments showing the validity of the proposed system and an analysis of the computational resources and performance of the applied algorithms.