Assessment of genetic diversity and structure of Bambara groundnut [Vigna subterranea (L.) verdc.] landraces in South Africa.

With its drought tolerant and protein-rich properties, Bambara groundnut [Vigna subterranea (L.) Verdc.], an indigenous African legume crop can contribute immensely to food security. This miracle crop is used as food and for the enhancement of soil fertility in South Africa. Knowledge on the genetic diversity and structure among the Bambara groundnut landraces can pave the way for the effective use and cultivation of this crop in southern Africa, especially South Africa. The aim of this study was to assess the genetic diversity and structure among Bambara groundnut landraces collected across South Africa and compared to a limited number of accessions from southern Africa using SSR markers. Seventy-eight Bambara groundnut accessions were genotyped using 19 Bambara specific SSR markers. SSR loci explored in this study, were all polymorphic. A total of 127 alleles were detected with a mean of 6.7 alleles per locus. Allele diversity and frequency among genotypes varied from 0.21 to 0.85 with an average of 0.62 per locus. Genetic variation as described by the analysis of molecular variance indicated higher genetic diversity (92%) within landraces than between (8%) different landraces. Population structure analysis showed that three subpopulations existed, and most of the South African accessions were restricted to one subpopulation, indicating that Bambara landraces has the ability to form unique haplotypes in different environments. Information harnessed in this study is helpful for further use in breeding programs for crop improvement.

Phenotypic and Genotypic Variation of Puccinia helianthi in South Africa.

Sunflower (Helianthus annuus L.) is the third largest grain crop by area planted in South Africa (SA). The annual yield is negatively affected by sunflower rust caused by Puccinia helianthi Schw. (Phe). Four Phe races were described in SA in the middle 1990s, but since then, no new race descriptions have been conducted. This has resulted in an information gap on the current Phe population, making it difficult to explain increased disease incidence and loss of resistance in previously resistant hybrids. To address this, 114 Phe field isolates along with 23 historic isolates were phenotyped using the international set of 11 sunflower differentials containing the R1, R2/R10, R3, R4a, R4b, R4c, R4d, R5, Pu6, and Radv resistance genes. Three new Phe races were identified, bringing the total number of South African races recorded to seven. No avirulence was detected attributable to the R1 gene, with the R4d and Radv genes remaining effective. Four main genetic lineages were detected with no obvious correlation between phenotype and genotype. The detection of three genetic lineages consisting exclusively of field isolates collected post-2006 suggested the possible recent entry of exotic introductions into SA. This, combined with the fact that one lineage consisted exclusively of the most virulent race Phe7721, confirmed a clear shift in the Phe population that could explain the increased virulence and occurrence of the disease in SA.

Line × tester analysis of maize grain yield under acid and non-acid soil conditions.

Soil acidity has received less attention than other biophysical stresses such as drought and low N, despite accounting for a considerable reduction in maize (Zea mays L.) productivity in many parts of southern Africa. The line × tester mating design was used to determine the general combining ability (GCA) for grain yield of 14 maize inbred lines and the specific combining ability (SCA) of their corresponding crosses. Thirty-three single-cross hybrids were evaluated under acid and optimum soils across 11 environments over three seasons. Across environments, mean grain yield reduction ranged from 11 to 37% due to low pH. Additive gene action was more important than nonadditive gene action for grain yield under both soil conditions. Tester GCA effects were larger for grain yield than GCA effects of lines and SCA effects of crosses for both soil conditions. Tester GCA effects were less sensitive to environmental fluctuations than line GCA effects and SCA effects of crosses. Cross combinations with desirable SCA effects for grain yield were associated with high per se grain yield, which suggests that SCA was a good predictor of grain yield in this study. These crosses consisted of good × good and good × poor general combiners, which indicates that GCA was a good predictor of grain yield. Therefore, priority should be given for yield selection in progenies and hybridization of specific crosses with desirable SCA when breeding acid-soil-tolerant maize.