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1.
Chaos ; 29(6): 063114, 2019 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-31266315

RESUMO

Here, we introduce PageRank (PR) in a seismic network as an appropriate alarming clue before the occurrence of the event to be worthwhile in hazard probabilistic evaluation of earthquakes. Studying PR changes of two main shocks in Iran and Italy by means of temporal and spatial windows reveals that their PR values increase drastically before the event, while there is no trend for other considered locations and/or other time intervals. Therefore, the PR value seems to be an appropriate index of a place induction by previous events and its susceptibility for having a new earthquake. Moreover, summing over the PRs of areas close to the Italy event location and tracking this newly defined PR behavior show an increasing trend before the main shock implying that the close regions are influenced and become highly connected before the event as well as the earthquake location itself. It is also indicated that PR behavior is not necessarily correlated to the number of occurring earthquakes and is inherently the result of points connectivity and interactions.

2.
Sci Rep ; 7: 41543, 2017 01 27.
Artigo em Inglês | MEDLINE | ID: mdl-28128320

RESUMO

Functional DNA sub-sequences and genome elements are spatially clustered through the genome just as keywords in literary texts. Therefore, some of the methods for ranking words in texts can also be used to compare different DNA sub-sequences. In analogy with the literary texts, here we claim that the distribution of distances between the successive sub-sequences (words) is q-exponential which is the distribution function in non-extensive statistical mechanics. Thus the q-parameter can be used as a measure of words clustering levels. Here, we analyzed the distribution of distances between consecutive occurrences of 16 possible dinucleotides in human chromosomes to obtain their corresponding q-parameters. We found that CG as a biologically important two-letter word concerning its methylation, has the highest clustering level. This finding shows the predicting ability of the method in biology. We also proposed that chromosome 18 with the largest value of q-parameter for promoters of genes is more sensitive to dietary and lifestyle. We extended our study to compare the genome of some selected organisms and concluded that the clustering level of CGs increases in higher evolutionary organisms compared to lower ones.


Assuntos
Análise por Conglomerados , DNA/genética , Genômica , Algoritmos , Composição de Bases , Biologia Computacional/métodos , DNA/química , Exoma , Genoma , Genômica/métodos
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