Algorithm for tracking peaks amongst numerous datasets in comprehensive two-dimensional chromatography to enhance data analysis and interpretation.

Analytical data processing often requires the comparison of data, i.e. finding similarities and differences within separations. In this context, a peak-tracking algorithm was developed to compare multiple datasets in one-dimensional (1D) and two-dimensional (2D) chromatography. Two application strategies were investigated: i) data processing where all chromatograms are produced in one sequence and processed simultaneously, and ii) method optimization where chromatograms are produced and processed cumulatively. The first strategy was tested on data from comprehensive 2D liquid chromatography and comprehensive 2D gas chromatography separations of academic and industrial samples of varying compound classes (monoclonal-antibody digest, wine volatiles, polymer granulate headspace, and mayonnaise). Peaks were tracked in up to 29 chromatograms at once, but this could be upscaled when necessary. However, the peak-tracking algorithm performed less accurate for trace analytes, since, peaks that are difficult to detect are also difficult to track. The second strategy was tested with 1D liquid chromatography separations, that were optimized using automated method-development. The strategy for method optimization was quicker to detect peaks that were still poorly separated in earlier chromatograms compared to assigning a target chromatogram, to which all other chromatograms are compared. Rendering it a useful tool for automated method optimization.

Column Selection and Optimization for Comprehensive Two-Dimensional Gas Chromatography: A Review.

Compared to one-dimensional gas chromatography, comprehensive two-dimensional gas chromatography (GC × GC) method development is significantly more complex because more method development choices need to be made and because of the complex interplay of the primary and secondary parameters; the individual dimensions cannot be optimized separately. Also, optimization is restricted by requirements such as the modulation criterion and upper temperature limits of the individual columns. In general, the internal diameter of the primary column is larger than the internal diameter of the secondary column which complicates the optimization and leads to sub-optimal flow settings, column loadability issues and indirectly a reduction of the overall separation efficiency. In this review, papers concerning method development for comprehensive two-dimensional gas chromatography (GC × GC) are discussed and general guidelines are proposed with the focus on selecting the GC × GC instrumental set-up and column-set and optimization of the GC × GC settings.

Two metrics for measuring orthogonality for two-dimensional chromatography.

Orthogonality can be used as a selection parameter for two-dimensional chromatography column selection (e.g. in GC × GC or LC × LC) or for method optimization purposes, both aiming for maximal orthogonality for a particular analytical application. In order to improve the concurrence of two-dimensional chromatography expert's orthogonality grading, two orthogonality metrics, %FIT and %BIN, were developed, evaluated and compared with the Asterisks orthogonality metric. The %BIN is a bin counting approach where the number of bins is fixed at 25 and deviations from the expected average number of peaks per bin is used as the basis for the orthogonality calculation. The %FIT is based on fitting polynomials of degree two, through the xy and the yx data and calculating the average minimal distance and standard deviation of all data points above and below the fitted polynomials. The orthogonality metrics were evaluated by using 14 different types of computer generated xy datasets and two measured LC × LC datasets. Both %FIT and %BIN, were shown to have a larger discriminative power than the Asterisks equations, and are in good agreement with the orthogonality scores for 2D-chromatograms provided by nine experts.

A procedure for comprehensive two-dimensional gas chromatography retention time locked dual detection.

In this paper, a novel, and easy to perform, retention time locking procedure for locking primary and secondary retention times of detector signals in comprehensive two-dimensional gas chromatography (GCxGC) dual-detection is proposed and its advantages are demonstrated and discussed. The dual detection retention time locking procedure is a 2-step process for a GCxGC system in which the effluent of the primary column is split, by using a pressure regulated splitter, towards the GCxGC modulator using two identical secondary GC columns of which one is installed in the main GC oven and the other is installed in a secondary GC oven. The first step of the locking procedure is to minimize the secondary retention time difference between both detectors of a compound, which has a retention factor (k) close to 0. This is done by stepwise altering the effective secondary column length, simply by sliding the secondary column, which is installed in the main oven, forwards or backwards through the modulator. The second step is to minimize the secondary retention time difference of a compound which has a significant retention in both dimensions. This is done by stepwise altering the secondary oven temperature rate. This locking procedure was successfully demonstrated for the analysis of a diesel sample by GCxGC coupled to a time of flight mass spectrometer (TOFMS) and a nitrogen chemiluminescence detector (NCD) and by GCxGC coupled to a TOFMS and a flame ionization detector (FID). For all compounds the average absolute secondary retention time differences between the NCD or the FID and the TOFMS detectors were 0.03, and 0.07s, respectively, which are significantly less than the average peak widths at half heights, which was 0.2s.

A new DBS card with spot sizes independent of the hematocrit value of blood.

BACKGROUND: DBS cards have been a big promise for decades. However, blood with low hematocrit (Ht) values results on regular cellulose-based DBS cards in larger spot sizes, compared with blood with high Ht-values. A new material has been developed to solve this problem. RESULTS: This material, based on hydrophilic-coated woven polyester fibers, shows spot sizes independent of the Ht-value of blood. Homogeneity over the spot is within 10% RSD. CONCLUSION: Quantitative measurements over a broad Ht range show nonbiased results compared with whole spot analysis. The cards are experienced as reproducible, robust and easy to use on aspects of punchability and extractability.

Tunable secondary dimension selectivity in comprehensive two-dimensional gas chromatography.

In this paper two tunable two-dimensional gas chromatography setups are compared and described in which the secondary dimension consists of two different capillary columns coupled in series. In the first setup the selectivity of the second dimension can be tuned by adjusting the effective column length of the first secondary dimension column, simply by sliding it stepwise back or forward through the GC×GC modulator. In the second setup, in which the first secondary dimension column is installed in a separate GC-oven (oven-2), the overall selectivity of the second dimension can be tuned by adjusting the oven-2 temperature offset with respect to the main oven. The contribution of the first secondary dimension column to the overall secondary dimension separation can be decreased by applying a higher temperature offset. A real-life sample, the headspace of a coffee powder, was used to demonstrate the added value of tunable GC×GC by solving coelutions of some specific aroma compounds. Besides optimizing the overall GC×GC separation, by altering the second dimension column selectivity, these set-ups also offer enhanced possibilities for qualitative analysis. By stepwise altering the selectivity of the second dimension, classes of compounds showing similar retention behavior could be discriminated.

Quantitative analysis of morphine in dried blood spots by using morphine-d3 pre-impregnated dried blood spot cards.

Two different internal standard dried blood spot (DBS) pre-impregnation procedures (prior to blood spotting) were investigated. In the first procedure DBS pre-impregnation is performed by immersing the DBS card fully into an internal standard solution. In the second procedure pre-impregnation is performed by pipetting a certain volume of an internal standard solution onto the DBS card. Morphine-d3 was used as the model compound for all experiments. The pre-impregnation procedure by immersing was further investigated with respect to homogeneity of impregnation, influence of different blood spotting techniques and the influence of spotting different blood volumes on the internal standard distribution, calibration and stability of pre-impregnated cards. Finally, the immersing procedure was used for the analysis of morphine in dried blood spots and the results were compared to the conventional procedure in which the internal standard morphine-d3 was added to the extraction solvent. The new pre-impregnated cards couple simplicity of operation and convenient use in the field to results equivalent to the conventional procedure.

Temperature-tunable selectivity in comprehensive two-dimensional gas chromatography.

A temperature-tunable two-dimensional gas chromatography setup, consisting of three capillary columns with different selectivity, is described. In this setup the selectivity of the primary dimension can be tuned by adjusting the temperature offset of two in series-coupled capillary columns, both columns being part of the primary dimension and positioned in two separate GC ovens. The overall GC×GC separation can be optimized by altering the selectivity of the primary dimension. Besides tuning selectivity, in order to achieve optimal separation, this 2D-GC setup also offers enhanced opportunities for qualitative analysis. Sequentially altering the selectivity of the primary dimension enables one to identify groups of compounds which show similar chromatographic retention behavior.

Alignment and clustering strategies for GC×GC-MS features using a cylindrical mapping.

Comprehensive two-dimensional gas chromatography coupled to mass spectrometry is a powerful tool to analyze complex samples. For application of the technique in studies like biomarker discovery in which large sets of complex samples have to be analyzed, extensive preprocessing is needed to align the data obtained in several injections (analyses). We developed new alignment and clustering algorithms for this type of data. New in the current procedures is the consistent way in which the phenomenon referred to as wrap-around is treated. The data analysis problems associated with this phenomenon are solved by treating the 2D display as the surface of a three-dimensional cylinder. Based on this transformation we developed a new similarity metric for features as a function of both the cylindrical distance (reflecting similarity in chromatographic behavior) and of the mass spectral correlation (reflecting similarity in chemical structure). The concepts are used in warping and clustering, and include a protection against greedy warping. The methods were applied - for the purpose of an example - to the analysis of 11 replicates of a human urine sample concentrated by solid phase extraction. It is shown that the alignment is well protected against greedy warping which is important with respect to analytical qualities as robustness and repeatability. It is also demonstrated that chemically similar features are clustered together. The paper is organized as follows. First a brief introduction is provided addressing the background of the GC×GC-MS data structure followed by a theoretical section with a conceptual description of the procedures and details of the algorithms. Finally an example is given in the experimental section, illustrating the application of the procedures.

Retention time locking procedure for comprehensive two-dimensional gas chromatography.

In gas chromatography (GC) reproducible retention times are in many cases highly favorable or in some cases even required. In one-dimensional GC, retention time shifts can be eliminated or minimized using a procedure called retention time locking (RTL). This procedure is based on adjusting the (constant) column head pressure. Unfortunately, this RTL procedure cannot be used in comprehensive two-dimensional gas chromatography (GC×GC) given the fact that peaks will shift in both dimensions. Adjusting the column head pressure in GC×GC will only minimize or eliminate the primary retention time shifts. In this paper, a fast and easy to perform, two-step retention time locking procedure for two-dimensional gas chromatography (2D-RTL) is proposed and its feasibility is demonstrated. This 2D-RTL procedure involves adjustment of the column head pressure or constant column flow, followed by the adjustment of the so-called effective secondary column length. The secondary column length is increased or decreased, simply by moving it stepwise through the modulator. It is demonstrated that retention time shifts in both the primary- and secondary-dimension, which may occur after e.g. replacing the column set, can be minimized to less than half peak base width. The proposed 2D-RTL procedure is used successfully for approximately 1 year in our laboratory.

Enantioselective gas chromatographic analysis of aqueous samples by on-line derivatisation. Application to enzymatic reactions.

A new gas chromatography (GC) method is presented for analysing both the conversion and the enantiomeric excess (e.e.) of samples from alcohol dehydrogenase reactions. The chiral compounds studied were a series of saturated, straight chain alcohols, ranging from 2-butanol to 2-heptanol. The alcohols were converted to the corresponding trifluoroacetylated derivatives by injecting trifluoroacetic anhydride onto the column shortly after injection of the aqueous samples in split-injection mode (1:100) onto a Chiraldex G-TA capillary GC column. Injecting seven hundred aqueous enzymatic reaction mixtures according to the above-mentioned procedure revealed no noticeable loss of column performance. Using the new GC method, conventional sample work-up procedures such as extraction and off-line derivatisation are eliminated and throughput of samples is significantly enhanced.

Homeopathic ligand-free palladium as a catalyst in the heck reaction. A comparison with a palladacycle.

[reaction: see text] Ligand-free Pd(OAc)(2) can be used as a catalyst in the Heck reaction of aryl bromides as long as the amount of catalyst is kept between 0.01 and 0.1 mol %. At higher concentrations palladium black forms and the reaction stops. The actual catalyst is monomeric. Palladacycles merely serve as a source of ligand-free palladium in Heck reactions of aryl bromides.