Genetic insights into the globally invasive and taxonomically problematic tree genus Prosopis.

Accurate taxonomic identification of alien species is crucial to detect new incursions, prevent or reduce the arrival of new invaders and implement management options such as biological control. Globally, the taxonomy of non-native Prosopis species is problematic due to misidentification and extensive hybridization. We performed a genetic analysis on several Prosopis species, and their putative hybrids, including both native and non-native populations, with a special focus on Prosopis invasions in Eastern Africa (Ethiopia, Kenya and Tanzania). We aimed to clarify the taxonomic placement of non-native populations and to infer the introduction histories of Prosopis in Eastern Africa. DNA sequencing data from nuclear and chloroplast markers showed high homology (almost 100 %) between most species analysed. Analyses based on seven nuclear microsatellites confirmed weak population genetic structure among Prosopis species. Hybrids and polyploid individuals were recorded in both native and non-native populations. Invasive genotypes of Prosopis juliflora in Kenya and Ethiopia could have a similar native Mexican origin, while Tanzanian genotypes likely are from a different source. Native Peruvian Prosopis pallida genotypes showed high similarity with non-invasive genotypes from Kenya. Levels of introduced genetic diversity, relative to native populations, suggest that multiple introductions of P. juliflora and P. pallida occurred in Eastern Africa. Polyploidy may explain the successful invasion of P. juliflora in Eastern Africa. The polyploid P. juliflora was highly differentiated from the rest of the (diploid) species within the genus. The lack of genetic differentiation between most diploid species in their native ranges supports the notion that hybridization between allopatric species may occur frequently when they are co-introduced into non-native areas. For regulatory purposes, we propose to treat diploid Prosopis taxa from the Americas as a single taxonomic unit in non-native ranges.

Folates in legume root nodules.

Folates are multifunctional metabolites in plants that are essential for cell division, nucleic acids and amino acid synthesis. During symbiotic nitrogen fixation in legumes, these cofactors are needed for de novo purine biosynthesis, meaning that changes in the folate pools could directly affect the flow of fixed nitrogen to the plant. Its role related to symbiotic nitrogen fixation has not been yet explored, but recent data suggest a relevant role during the first steps. Transcriptomic, metabolomic and proteomic analyses indicate that folates are accumulated in symbiotic plant tissue, as they are involved, not only in de novo purines biosynthesis, but in nitrogen translocation, endoreduplication and phytohormones biosynthesis. Understanding the possible implication of folate pools during the nitrogen fixation and assimilation, might aid for new engineering targets, in relation to the two transformylations or the production of glycine by serine hydroxymethyltransferase during the de novo purine biosynthetic pathway. In this review, we intend to deliver and discuss the available evidence that support a relevant role of folates during the symbiotic nitrogen fixation.

Septoglomus mexicanum, a new species of arbuscular mycorrhizal fungi from semiarid regions in Mexico.

Septoglomus mexicanum is here described as a new species of arbuscular mycorrhizal fungi (AMF; Glomeromycota) based on morphological and phylogenetic analyses. It was isolated from rhizospheric soil of two endemic Mexican legumes: Prosopis laevigata and Mimosa luisana, which grow in semiarid regions of central Mexico. Septoglomus mexicanum is characterized by forming globose spores of (154.5-)202.8(-228.9) µm diam and a spore wall consisting of four layers (SWL1-SWL4): outer wall layer (SWL1) hyaline, evanescent, (1.7-)3.2(-4.3) µm thick; SWL2 laminate and smooth, orange to reddish orange, (3.1-)4.5(-6.1) µm thick; SWL3 laminate, smooth, reddish orange to reddish brown, (4.1-)5.1(-5.7) µm thick; and SWL4 hyaline, semiflexible, (0.93-)1.2(-1.4) µm thick. None of the spore wall layers stain with Melzer's reagent. The subtending hypha has a color from yellowish to golden and presents a septum on spore base. Septoglomus mexicanum can be distinguished from all other Septoglomus species by spore size and color, by spore wall structure (four layers), and by color change of the subtending hypha. Phylogenetic analysis based on the AMF extended DNA barcode covering a 1.5-kb fragment of the small subunit (SSU), internal transcribed spacer region (ITS1-5.8S-ITS2), and the large subunit (LSU) of rRNA genes places S. mexicanum in the genus Septoglomus, separated from other described Septoglomus species, especially S. turnauae, with whom it could be confused morphologically. All available sequences in public databases suggest that this new fungal species has not yet been previously detected. Thus, there are currently 149 Glomeromycota species registered in Mexico, representing 47.4% of the known species worldwide.

Abundancia y riqueza de hongos micorrizógenos arbusculares en cafetales de Soconusco, Chiapas, México / Abundance and richness of arbuscular mycorrhizal fungi in coffee plantations from Soconusco, Chiapas, Mexico

Resumen El cultivo del café, en la economía mexicana y en la región del Soconusco en Chiapas, aporta importantes divisas; sin embargo es susceptible a plagas y enfermedades, por lo que se requiere reforzar su producción a través de un manejo más sustentable. Este estudio analizó la abundancia, riqueza y composición de hongos micorrizógenos arbusculares (HMA) nativos que pudieran emplearse en un futuro como biofertilizantes en el cultivo del café. En 21 muestras de suelo recolectadas en noviembre 2015 de siete sitios en la región del Soconusco, Chiapas, México, cultivados con café "robusta" (Coffea canephora), se cuantificó la abundancia de esporas, la riqueza y composición de morfoespecies de HMA y se exploró su relación con las propiedades del suelo. Se obtuvo un total de 20 morfoespecies y cinco nuevos registros de HMA para Chiapas, las morfoespecies más frecuentes pertenecen a los géneros Acaulospora y Glomus. Los sitios Toluca y Victoria tuvieron mayor riqueza de especies (17 spp. c/u) que San Agustín, 20 de noviembre y San Luis Nexapa (4 - 7 spp. c/u); mientras que Providencia y Platanar registraron una riqueza intermedia y los mayores valores de abundancia de esporas. Los sitios Victoria y Toluca presentaron un 97 % de disimilitud en la composición de especies de HMA con respecto a los demás sitios; la cual fue explicada por la baja concentración de PO4 -3en el suelo de Victoria y Toluca. La disponibilidad de P, ligada a la acidez del suelo, fueron los factores que podrían estar regulando las comunidades de HMA en el suelo de la rizosfera de los cafetos en la región del Soconusco. Se propone que podrían haber consorcios de HMA específicos para los niveles de P y acidez presentes en diferentes sitios con cafetos, o bien consorcios de especies de Acaulospora y Glomusacordes con las condiciones ambientales en las que se desarrolla el café, cuya compatibilidad y funcionalidad debe examinarse antes de emplearlos como biofertilizantes nativos en los cafetos de esta región tropical de México.

Abstract In the Mexican economy, and especially in the Soconusco region of Chiapas, coffee is economically important, and sustainable management most cover pests and diseases. In this study, we searched for native arbuscular mycorrhizal fungi (AMF) that could be used as biofertilizers in coffee cultivation. We collected 21 soil samples from seven coffee plantations (Coffea canephora) in November 2015. We used wet sieving and decanting to quantify abundance, richness and composition of morphospecies, as well as their relationships with soil properties. A total of 20 morphospecies and five new records of AMF were obtained, and the most frequent genera were Acaulospora and Glomus. The Toluca and Victoria sites had more morphospecies richness (17 spp. each) than San Agustín, November 20 and San Luis Nexapa (4-7 spp. each). Providencia and Platanar were intermediate but had the highest spore abundance. The dissimilarity of Victoria and Toluca may reflect a low concentration of PO4 -3in the soil. P availability, linked to soil acidity, sems to be regulating these mycorrhizae communities at Soconusco. AMF consortia specific for soil P-levels and acidity, i.e. Acaulospora and Glomusconsortia, may occur and be common in the environmental conditions of Mexican coffee plantations, Strains should be tested for compatibility and functionality before using them as native biofertilizers. Rev. Biol. Trop. 66(1): 91-105. Epub 2018 March 01.

[Spatial and seasonal variation of soil culturable-bacterial functional groups in a Mexican tropical dry forest]. / Variación espacial y estacional de grupos funcionales de bacterias cultivables del suelo de un bosque tropical seco en México.

Microbial biomass and activity in soils are frequently studied in tropical dry forests, but scarce information is available about the relationships between functional bacterial groups and soil fertility, where relief interacts with rainfall seasonality. The culturable-bacterial groups and nutrients were studied during two consecutive years in soils from two topographic areas of different relief (hilltop vs hillslope) in a tropical dry forest from Chamela Jalisco, Mexico. We expected that seasonal and spatial variation in soil resources availability affects the abundance of functional culturable-bacterial groups. To evaluate this, fifteen soil cores (1kg), 0-5cm depth, were taken in the dry, early rainy and rainy seasons, from each of the ten replicate plots in hilltop and hillslope areas located in three microbasins. We found that hilltop soils were more organic and had higher concentration of labile C and total nutrient forms than hillslope soils, for which these soils had higher counts of colony-forming units (CFU) of total heterotrophic and P solubilizing bacteria. In both hilltop and hillslope soils, C and nutrient concentrations, as well as the counts of CFU of heterotrophic and P solubilizing bacteria generally decreased from the dry to the rainy season during the two study years. In contrast, the counts of CFU nitrifying and cellulolytic bacteria were higher at the hillslope than at the hilltop soils. The seasonal pattern of both groups was opposite to that of heterotrophic bacteria, presumably associated with a decrease in soil labile C and organic matter quality. In conclusion, our study suggests that available C appears to be the main factor that controls the structure of soil bacterial groups and soil fertility, where relief, rainfall seasonality and intra- and inter-annual variations are critical factors that interactively modify bacterial dynamics related to soil C availability in the tropical dry forest.

Variación espacial y estacional de grupos funcionales de bacterias cultivables del suelo de un bosque tropical seco en México / Spatial and seasonal variation of soil culturable-bacterial functional groups in a Mexican tropical dry forest

Microbial biomass and activity in soils are frequently studied in tropical dry forests, but scarce information is available about the relationships between functional bacterial groups and soil fertility, where relief interacts with rainfall seasonality. The culturable-bacterial groups and nutrients were studied during two consecutive years in soils from two topographic areas of different relief (hilltop vs hillslope) in a tropical dry forest from Chamela Jalisco, Mexico. We expected that seasonal and spatial variation in soil resources availability affects the abundance of functional culturable-bacterial groups. To evaluate this, fifteen soil cores (1kg), 0-5cm depth, were taken in the dry, early rainy and rainy seasons, from each of the ten replicate plots in hilltop and hillslope areas located in three microbasins. We found that hilltop soils were more organic and had higher concentration of labile C and total nutrient forms than hillslope soils, for which these soils had higher counts of colony-forming units (CFU) of total heterotrophic and P solubilizing bacteria. In both hilltop and hillslope soils, C and nutrient concentrations, as well as the counts of CFU of heterotrophic and P solubilizing bacteria generally decreased from the dry to the rainy season during the two study years. In contrast, the counts of CFU nitrifying and cellulolytic bacteria were higher at the hillslope than at the hilltop soils. The seasonal pattern of both groups was opposite to that of heterotrophic bacteria, presumably associated with a decrease in soil labile C and organic matter quality. In conclusion, our study suggests that available C appears to be the main factor that controls the structure of soil bacterial groups and soil fertility, where relief, rainfall seasonality and intraand inter-annual variations are critical factors that interactively modify bacterial dynamics related to soil C availability in the tropical dry forest.

Los bosques tropicales secos tienen una amplia heterogeneidad ambiental y por lo tanto se podría esperar una variación temporal y espacial en la abundancia y tipo de grupos bacterianos activos. Se evaluó, durante dos años consecutivos, el efecto de la estacionalidad de la lluvia sobre algunos grupos bacterianos cultivables y nutrimentos del suelo en dos posiciones topográficas (crestas vs laderas) en el bosque tropical seco, Chamela Jalisco, México. La hipótesis fue que la variación temporal y espacial de la disponibilidad de recursos afectaría la abundancia de los grupos bacterianos funcionales (heterótrofas totales, celulolíticas, solubilizadores de fosfatos y nitrificantes) del suelo. En las crestas, el suelo fue más orgánico y con mayor concentración de nutrimentos totales y C orgánico lábil que en la ladera, registrando más bacterias heterótrofas y solubilizadoras de fosfato. En ambas posiciones topográficas la concentración de C y nutrimentos, así como el número de bacterias heterótrofas y solubilizadoras de P, decrecieron de la estación seca a la lluviosa en ambos años. En contraste, las bacterias nitrificantes fueron mayores en el suelo de la ladera, y al igual que las celulolíticas, tuvieron un patrón estacional opuesto a las bacterias heterótrofas, asociado a la disminución del C lábil y de la calidad de la materia orgánica. En conclusión, se sugiere que el relieve, la estacionalidad y la variación inter-anual de la lluvia regulan interactivamente la relación entre el C disponible y la estructura de las comunidades bacterianas del suelo en el bosque tropical seco de Chamela.

Prosopis laevigata and Mimosa biuncifera (Leguminosae), jointly influence plant diversity and soil fertility of a Mexican semiarid ecosystem.

Prosopis laevigata and Mimosa biuncifera are frequently found in arid and semiarid shrublands, but scarce information is available about their influence on plant community structure and soil fertility. We compared plant community structure, diversity and soil nutrients of three semiarid shrubland sites located in Mezquital Valley, Mexico. These sites differ in their dominant species: Site 1 (Bingu) P. laevigata, Site 2 (González) M. biuncifera, and Site 3 (Rincón) with the presence of both legumes. The results showed that the plant community with P. laevigata and M. biuncifera (Site 3) had more cover, taller plants and higher plant diversity than sites with only one legume (Site 1 and Site 2). Soil organic matter (SOM), soil organic carbon (SOC), total nitrogen (TN), phosphorus-Olsen (P) and C mineralization were higher in the soil under the canopy of both legumes than in bare soil. In contrast, soil cation concentrations were lower under the canopy of P. laevigata, but not for M. biuncifera. In addition, the density of arbuscular mycorrhizal fungi spores was higher within the soil under the canopy of M. biuncifera than in the soil under the canopy of P. laevigata. Thus, resource islands (RI) created by P. laevigata increased the amounts of SOC, TN and P when compared with the RI of M. biuncifera. This study provided evidences about the importance of species identity in order to expand the niche availability for the establishment of other plants, and highlights that P. laevigata and M. biuncifera jointly influencing plant colonization within semiarid ecosystems.