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1.
IEEE Trans Image Process ; 26(11): 5094-5106, 2017 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-28534773

RESUMO

Sparsity constrained single image super-resolution (SR) has been of much recent interest. A typical approach involves sparsely representing patches in a low-resolution (LR) input image via a dictionary of example LR patches, and then using the coefficients of this representation to generate the high-resolution (HR) output via an analogous HR dictionary. However, most existing sparse representation methods for SR focus on the luminance channel information and do not capture interactions between color channels. In this paper, we extend sparsity-based SR to multiple color channels by taking the color information into account. Edge similarities amongst RGB color bands are exploited as cross channel correlation constraints. These additional constraints lead to a new optimization problem, which is not easily solvable; however, a tractable solution is proposed to solve it efficiently. Moreover, to fully exploit the complementary information among color channels, a dictionary learning method is also proposed specifically to learn color dictionaries that encourage edge similarities. Merits of the proposed method over state of the art are demonstrated both visually and quantitatively using image quality metrics.

2.
IEEE Trans Med Imaging ; 35(3): 738-51, 2016 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-26513781

RESUMO

In histopathological image analysis, feature extraction for classification is a challenging task due to the diversity of histology features suitable for each problem as well as presence of rich geometrical structures. In this paper, we propose an automatic feature discovery framework via learning class-specific dictionaries and present a low-complexity method for classification and disease grading in histopathology. Essentially, our Discriminative Feature-oriented Dictionary Learning (DFDL) method learns class-specific dictionaries such that under a sparsity constraint, the learned dictionaries allow representing a new image sample parsimoniously via the dictionary corresponding to the class identity of the sample. At the same time, the dictionary is designed to be poorly capable of representing samples from other classes. Experiments on three challenging real-world image databases: 1) histopathological images of intraductal breast lesions, 2) mammalian kidney, lung and spleen images provided by the Animal Diagnostics Lab (ADL) at Pennsylvania State University, and 3) brain tumor images from The Cancer Genome Atlas (TCGA) database, reveal the merits of our proposal over state-of-the-art alternatives. Moreover, we demonstrate that DFDL exhibits a more graceful decay in classification accuracy against the number of training images which is highly desirable in practice where generous training is often not available.


Assuntos
Histocitoquímica/métodos , Processamento de Imagem Assistida por Computador/métodos , Aprendizado de Máquina , Neoplasias/diagnóstico por imagem , Humanos , Rim/diagnóstico por imagem , Rim/patologia , Pulmão/diagnóstico por imagem , Pulmão/patologia , Neoplasias/patologia
3.
J Pathol Inform ; 6: 15, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25838967

RESUMO

INTRODUCTION: Histopathological images have rich structural information, are multi-channel in nature and contain meaningful pathological information at various scales. Sophisticated image analysis tools that can automatically extract discriminative information from the histopathology image slides for diagnosis remain an area of significant research activity. In this work, we focus on automated brain cancer grading, specifically glioma grading. Grading of a glioma is a highly important problem in pathology and is largely done manually by medical experts based on an examination of pathology slides (images). To complement the efforts of clinicians engaged in brain cancer diagnosis, we develop novel image processing algorithms and systems to automatically grade glioma tumor into two categories: Low-grade glioma (LGG) and high-grade glioma (HGG) which represent a more advanced stage of the disease. RESULTS: We propose novel image processing algorithms based on spatial domain analysis for glioma tumor grading that will complement the clinical interpretation of the tissue. The image processing techniques are developed in close collaboration with medical experts to mimic the visual cues that a clinician looks for in judging of the grade of the disease. Specifically, two algorithmic techniques are developed: (1) A cell segmentation and cell-count profile creation for identification of Pseudopalisading Necrosis, and (2) a customized operation of spatial and morphological filters to accurately identify microvascular proliferation (MVP). In both techniques, a hierarchical decision is made via a decision tree mechanism. If either Pseudopalisading Necrosis or MVP is found present in any part of the histopathology slide, the whole slide is identified as HGG, which is consistent with World Health Organization guidelines. Experimental results on the Cancer Genome Atlas database are presented in the form of: (1) Successful detection rates of pseudopalisading necrosis and MVP regions, (2) overall classification accuracy into LGG and HGG categories, and (3) receiver operating characteristic curves which can facilitate a desirable trade-off between HGG detection and false-alarm rates. CONCLUSION: The proposed method demonstrates fairly high accuracy and compares favorably against best-known alternatives such as the state-of-the-art WND-CHARM feature set provided by NIH combined with powerful support vector machine classifier. Our results reveal that the proposed method can be beneficial to a clinician in effectively separating histopathology slides into LGG and HGG categories, particularly where the analysis of a large number of slides is needed. Our work also reveals that MVP regions are much harder to detect than Pseudopalisading Necrosis and increasing accuracy of automated image processing for MVP detection emerges as a significant future research direction.

4.
IEEE Trans Med Imaging ; 33(5): 1163-79, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-24770920

RESUMO

The multi-channel nature of digital histopathological images presents an opportunity to exploit the correlated color channel information for better image modeling. Inspired by recent work in sparsity for single channel image classification, we propose a new simultaneous sparsity model for multi-channel histopathological image representation and classification (SHIRC). Essentially, we represent a histopathological image as a sparse linear combination of training examples under suitable channel-wise constraints. Classification is performed by solving a newly formulated simultaneous sparsity-based optimization problem. A practical challenge is the correspondence of image objects (cellular and nuclear structures) at different spatial locations in the image. We propose a robust locally adaptive variant of SHIRC (LA-SHIRC) to tackle this issue. Experiments on two challenging real-world image data sets: 1) mammalian tissue images acquired by pathologists of the animal diagnostics lab (ADL) at Pennsylvania State University, and 2) human intraductal breast lesions, reveal the merits of our proposal over state-of-the-art alternatives. Further, we demonstrate that LA-SHIRC exhibits a more graceful decay in classification accuracy against the number of training images which is highly desirable in practice where generous training per class is often not available.


Assuntos
Histocitoquímica/métodos , Processamento de Imagem Assistida por Computador/métodos , Algoritmos , Animais , Mama/patologia , Neoplasias da Mama/patologia , Bases de Dados Factuais , Feminino , Humanos , Rim/patologia , Curva ROC , Baço/patologia
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