Comparative transcriptome analysis of leaves and roots in response to sudden increase in salinity in Brassica napus by RNA-seq.

Amphidiploid species in the Brassicaceae family, such as Brassica napus, are more tolerant to environmental stress than their diploid ancestors.A relatively salt tolerant B. napus line, N119, identified in our previous study, was used. N119 maintained lower Na(+) content, and Na(+)/K(+) and Na(+)/Ca(2+) ratios in the leaves than a susceptible line. The transcriptome profiles of both the leaves and the roots 1 h and 12 h after stress were investigated. De novo assembly of individual transcriptome followed by sequence clustering yielded 161,537 nonredundant sequences. A total of 14,719 transcripts were differentially expressed in either organs at either time points. GO and KO enrichment analyses indicated that the same 49 GO terms and seven KO terms were, respectively, overrepresented in upregulated transcripts in both organs at 1 h after stress. Certain overrepresented GO term of genes upregulated at 1 h after stress in the leaves became overrepresented in genes downregulated at 12 h. A total of 582 transcription factors and 438 transporter genes were differentially regulated in both organs in response to salt shock. The transcriptome depicting gene network in the leaves and the roots regulated by salt shock provides valuable information on salt resistance genes for future application to crop improvement.

The heavy metal partition in size-fractions of the fine particles in agricultural soils contaminated by waste water and smelter dust.

The partitioning of pollutant in the size-fractions of fine particles is particularly important to its migration and bioavailability in soil environment. However, the impact of pollution sources on the partitioning was seldom addressed in the previous studies. In this study, the method of continuous flow ultra-centrifugation was developed to separate three size fractions (<1 µm, <0.6 µm and <0.2 µm) of the submicron particles from the soil polluted by wastewater and smelter dust respectively. The mineralogy and physicochemical properties of each size-fraction were characterized by X-ray diffraction, transmission electron microscope etc. Total content of the polluted metals and their chemical speciation were measured. A higher enrichment factor of the metals in the fractions of <1 µm or less were observed in the soil contaminated by wastewater than by smelter dust. The organic substance in the wastewater and calcite from lime application were assumed to play an important role in the metal accumulation in the fine particles of the wastewater polluted soil. While the metal accumulation in the fine particles of the smelter dust polluted soil is mainly associated with Mn oxides. Cadmium speciation in both soils is dominated by dilute acid soluble form and lead speciation in the smelter dust polluted soil is dominated by reducible form in all particles. This implied that the polluted soils might be a high risk to human health and ecosystem due to the high bioaccessibility of the metals as well as the mobility of the fine particles in soil.

Accumulation of uranium derived from long-term fertilizer applications in a cultivated Andisol.

The U concentrations in the soils of experimental fields with continuous fertilizer applications and in neighboring non-agricultural soils were determined. The surface soils in the three experimental fields with fertilizer applications contained higher amounts of U compared with the non-agricultural surface soils. The amount of U elevated in the soil was estimated by the vertical profile of U concentration, and an increase of about 200 mg m-2 of U was found in the soils at 0-35 cm depth during a 61-year cultivation period. The estimated value was almost the same as the amount of U added through the fertilizers as calculated from U concentrations in the applied fertilizers. Therefore, almost all the U from the fertilizers would still remain in the upper part of the soils. Chemical extraction results suggested that organic substances and noncrystalline clay minerals in the surface soil should play an important role for accumulation of U derived from the fertilizers.