Molecular Compositions of Oil-Bearing Sandstones and Oil-Asphaltenes from the Kharir Oilfields in the Western Central Masila Basin, Yemen.

Oil-bearing sandstone samples were collected from the Lower Cretaceous sequence in the Kharir-2 exploration well, Kharir oilfields (Eastern Yemen). The current study integrates biomarker of the aliphatic hydrocarbon fraction of the extracted oil with a new finding from the molecular structure of the oil-asphaltene, in order to learn more about their properties, including organic matter (OM) input, depositional environment, and thermal maturity. The overall oil composition results show that the extracted oils have a high saturated hydrocarbon of up to 50% and significant levels of aromatic hydrocarbon and polar components, indicating generally paraffinic to naphthenic oil. This claim agrees with the molecular structure of the kerogen derived from the pyrolysis-gas chromatography result of the oil-asphaltene, which suggests that the extracted oils from the Lower Cretaceous sandstone reservoirs are mainly paraffinic-naphthenic-aromatic oils, exhibiting low wax content and originated from marine type II kerogen. The type II kerogen of the marine-source rock is also demonstrated by the bulk kinetic model of the oil-asphaltene for the extracted oils, with a broad range of Ea between 38 and 62 kcal/mol and a frequency factor (A) of 1.52-1.47 × 1013/1 s. The biomarker characteristics of the aliphatic fraction show that the extracted oils from the Lower Cretaceous sandstone reservoirs were generated from clay-rich source rock, containing OM origin of mainly marine and terrestrial OM input and deposited under suboxic environmental conditions. Furthermore, the maturity-sensitive aliphatic biomarker parameters indicate that the extracted oils were generated from mature source rock in the range of the peak-mature stage of the oil generation window. Oil-source rock correlation of various established biomarker proxies for OM origin, depositional environment, and lithology suggests that these extracted oils were possibly generated from a single source rock, and the Madbi clay-rich formation contributed to most of the extracted oil from the Lower Cretaceous sandstone reservoir rocks.

Organic Geochemistry and 1-D Basin Modeling of the Late Triassic Baluti Formation: Implication of Shale Oil Potential in the Kurdistan Region of Iraq.

This investigation looks at the Late Triassic Baluti Formation's organic geochemical, mineralogical, and petrographical characteristics from a single exploration well (TT-22) near the Taq Taq oilfield in northern Iraq. The Baluti Formation shale samples that were studied in the studied well have high total organic carbon (TOC %) values up to 4.92 wt % and mostly hydrogen-rich types I and II kerogen with a minor gradient to types II/III and III kerogen, indicating a good oil-source rock. The hydrogen-rich kerogen was also confirmed by various organic matter (OM) origins and depositional environment-related biomarkers. The biomarker indicators demonstrate that the Baluti shale was deposited under anoxic conditions and contains a variety of OM generated mostly from algae marine and other aqueous organic materials, along with some terrigenous land plants. The geochemical and optical maturity indicators show that most of the examined Baluti shale samples, with a deep burial depth of more than 4000 m, are thermally mature, thus defining peak-mature to late-mature stages of the oil generation window. According to the basin models, from the late Miocene to the present, between 10 and 59% of the kerogen in the Baluti shale source rock has been transformed into oil, which is consistent with the VR values between 0.77 and 1.08%. The presence of the oil crossover in these shale rocks with an oil saturation index of more than 100 mg HC/g rock supports the maximal oil generation from the Baluti source rock system. Additionally, there was little oil expulsion from the Baluti source rock system at the end of the late Miocene, with transformation ratio values below 60% (59%). Considering the more significant oil generation and little expulsion, a high pressure was generated and forced the brittle minerals of the Baluti shales (mainly quartz), creating a natural fracture system as recognized and observed in the thin section. This natural fracture system enhances the porosity system of tight shale rocks of the Baluti Formation, giving rise to a high probability of oil production using hydraulic fracturing stimulation.

Implications of Organic Matter Input, Sedimentary Environmental Conditions, and Gas Generation Potential of the Organic-Rich Shale in the Onshore Jiza-Qamar Basin, Yemen.

The Jiza-Qamar Basin is one of the most important exploration sedimentary basins in Yemen. For over a decade, the exploration of hydrocarbons has been occurring in this basin. Late Cretaceous age rocks are the most occurring organic-rich sediments in this basin, including coals, coaly shales, and shales. The studied organic-rich shale beds are from the Late Cretaceous Mukalla Formation and associated with coal seams. These organic-rich shales can serve as source rocks for hydrocarbon generation potential. The current study investigates the geochemical characteristics, including assessing the organic matter (OM) input, sedimentary environmental conditions, and hydrocarbon generation potential of the organic-rich shale within the Mukalla Formation from three well locations in the onshore Jiza-Qamar Basin using organic geochemistry, biomarker, and carbon isotope measurements. The studied shale samples have high OM content with total organic carbon values between 0.74 and 19.48 wt %. Furthermore, they contain mainly hydrogen-poor Types III and IV kerogen, indicating the presence of the gas-prone source rock. The presence of these types of kerogen indicates the abundance of vitrinite and inertinite macerals, as established by microscopic investigation. However, the studied organic-rich shales had biomarker features, including high Ph/Ph ratio between 3.82 and 7.46, high Tm/Ts ratio of more than 7, and high C29 regular steranes compared to C27 and C28 regular steranes. Apart from the biomarker results, the studied Mukalla shales are characterized by the abundance of land-derived OM that deposited in fluvial to fluvial deltaic environments under highly oxic conditions. The finding of the considerable concentration of terrigenous OM is probably confirmed by the bulk carbon isotope and maceral composition data. The maturity indicators show that the examined organic-rich shale samples in the studied wells exhibit low VR values of up to 0.71%, and thereby, they have not been yet reached the high maturity for gas generation. This low maturity level in the studied wells is probably attributed to shallow burial depth, exhibiting depth of up to 2835 m. Therefore, the substantial gas exploration operations from the organic-rich shale source rock system of the Late Cretaceous Mukalla Formation can be recommended in the deeper stratigraphic succession in the offshore Jiza-Qamar Basin.

Bacterial thermophilic DNA polymerases: A focus on prominent biotechnological applications.

DNA polymerases are the enzymes able to replicate the genetic information in nucleic acid. As a result, they are necessary to copy the complete genome of every living creature before cell division and sustain the integrity of the genetic information throughout the life of each cell. Any organism that uses DNA as its genetic information, whether unicellular or multicellular, requires one or more thermostable DNA polymerases to thrive. Thermostable DNA polymerase is important in modern biotechnology and molecular biology because it results in methods such as DNA cloning, DNA sequencing, whole genome amplification, molecular diagnostics, polymerase chain reaction, synthetic biology, and single nucleotide polymorphism detection. There are at least 14 DNA-dependent DNA polymerases in the human genome, which is remarkable. These include the widely accepted, high-fidelity enzymes responsible for replicating the vast majority of genomic DNA and eight or more specialized DNA polymerases discovered in the last decade. The newly discovered polymerases' functions are still being elucidated. Still, one of its crucial tasks is to permit synthesis to resume despite the DNA damage that stops the progression of replication-fork. One of the primary areas of interest in the research field has been the quest for novel DNA polymerase since the unique features of each thermostable DNA polymerase may lead to the prospective creation of novel reagents. Furthermore, protein engineering strategies for generating mutant or artificial DNA polymerases have successfully generated potent DNA polymerases for various applications. In molecular biology, thermostable DNA polymerases are extremely useful for PCR-related methods. This article examines the role and importance of DNA polymerase in a variety of techniques.

An Insight into Modern Targeted Genome-Editing Technologies with a Special Focus on CRISPR/Cas9 and its Applications.

Genome-editing technology has enabled scientists to make changes in model organisms' DNA at the genomic level to get biotechnologically important products from them. Most commonly employed technologies for this purpose are transcription activator like effector nucleases (TALENs), homing-endonucleases or meganucleases, zinc finger nucleases (ZFNs), and clustered regularly interspaced short palindromic repeats (CRISPR) associated protein 9 (Cas9). Among these tools, CRISPR/Cas9 is most preferred because it's easy to use, has a small mutation rate, has great effectiveness, low cost of development, and decreased rate of advancement. CRISPR/Cas9 has a lot of applications in plants, animals, humans, and microbes. It also has applications in many fields such as horticulture, cancer, food biotechnology, and targeted human genome treatments. CRISPR technology has shown great potential for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic to provide early and easy detection methods, possible treatment, and vaccine development. In the present review, genome-editing tools with their basic assembly and features have been discussed. Exceptional notice has been paid to CRISPR technology on basis of its structure and significant applications in humans, plants, animals, and microbes such as bacteria, viruses, and fungi. The review has also shed a little light on current CRISPR challenges and future perspectives.

Urinary PAHs metabolites in Karakoram Highway's heavy traffic vehicle (HTV) drivers: evidence of exposure and health risk.

The current study features PAHs exposure on Karakoram Highway, a route of utmost importance in Pakistan. The drivers of heavy traffic vehicles (HTV) on Karakoram Highway spend long hours amid dense traffic and therefore, inevitably inhale huge amount of PAH carcinogens. The urinary metabolites of PAHs in such drivers (meeting selection criteria n = 48) and a control group (n = 49) were comparatively profiled. The higher urinary biomarkers among ninety-six percent HTV drivers were evident of PAHs exposure. We observed elevated concentrations of urinary benzo[a]pyrene metabolites (3-OH-BaP = 3.53 ± 0.62 ng g-1 creatinine and 9-OH-BaP = 3.69 ± 0.74 ng g-1 creatinine) in HTV driver's samples compared to controls (0.85 ± 0.08 and 0.31 ± 0.03 ng g-1 creatinine, respectively). Interestingly, urinary benzo[a]pyrene metabolites were detected in almost similar amount among HTV drivers irrespective of their working hours. A distinct smoking effect was manifested with rising urinary levels of 1-hydroxypyrene, 2-hydroxyphenanthrene, and 3-hydroxybenzo[a]pyrene with corresponding increase in driving hours per day. These metabolites exhibited characteristic exposures to low molecular weight volatile PAHs that are commonly found in vehicular exhaust. The elevated PAH body burden was directly linked to the nature of their job and the route-long environmental pollution on Karakoram Highway. Additionally, the poor economic status and smoking also increased HTV driver's health vulnerability and significantly declined their health capacity. There was conclusive evidence that HTV drivers were exposed to PAHs during a ride on Karakoram Highway, back and forth, an aspect not reported earlier.

CRISPR/Cas9: A revolutionary genome editing tool for human cancers treatment.

Cancer is a genetic disease stemming from genetic and epigenetic mutations and is the second most common cause of death across the globe. Clustered regularly interspaced short palindromic repeats (CRISPR) is an emerging gene-editing tool, acting as a defense system in bacteria and archaea. CRISPR/Cas9 technology holds immense potential in cancer diagnosis and treatment and has been utilized to develop cancer disease models such as medulloblastoma and glioblastoma mice models. In diagnostics, CRISPR can be used to quickly and efficiently detect genes involved in various cancer development, proliferation, metastasis, and drug resistance. CRISPR/Cas9 mediated cancer immunotherapy is a well-known treatment option after surgery, chemotherapy, and radiation therapy. It has marked a turning point in cancer treatment. However, despite its advantages and tremendous potential, there are many challenges such as off-target effects, editing efficiency of CRISPR/Cas9, efficient delivery of CRISPR/Cas9 components into the target cells and tissues, and low efficiency of HDR, which are some of the main issues and need further research and development for completely clinical application of this novel gene editing tool. Here, we present a CRISPR/Cas9 mediated cancer treatment method, its role and applications in various cancer treatments, its challenges, and possible solution to counter these challenges.