Comparative phylogeography reveals widespread cryptic diversity driven by ecology in Panamanian birds.

Widespread species often harbor unrecognized genetic diversity, and investigating the factors associated with such cryptic variation can help us better understand the forces driving diversification. Here, we identify potential cryptic species based on a comprehensive dataset of COI mitochondrial DNA barcodes from 2,333 individual Panamanian birds across 429 species, representing 391 (59%) of the 659 resident landbird species of the country, as well as opportunistically sampled waterbirds. We complement this dataset with additional publicly available mitochondrial loci, such as ND2 and cytochrome b, obtained from whole mitochondrial genomes from 20 taxa. Using barcode identification numbers (BINs), we find putative cryptic species in 19% of landbird species, highlighting hidden diversity in the relatively well-described avifauna of Panama. Whereas some of these mitochondrial divergence events corresponded with recognized geographic features that likely isolated populations, such as the Cordillera Central highlands, the majority (74%) of lowland splits were between eastern and western populations. The timing of these splits are not temporally coincident across taxa, suggesting that historical events, such as the formation of the Isthmus of Panama and Pleistocene climatic cycles, were not the primary drivers of cryptic diversification. Rather, we observed that forest species, understory species, insectivores, and strongly territorial species-all traits associated with lower dispersal ability-were all more likely to have multiple BINs in Panama, suggesting strong ecological associations with cryptic divergence. Additionally, hand-wing index, a proxy for dispersal capability, was significantly lower in species with multiple BINs, indicating that dispersal ability plays an important role in generating diversity in Neotropical birds. Together, these results underscore the need for evolutionary studies of tropical bird communities to consider ecological factors along with geographic explanations, and that even in areas with well-known avifauna, avian diversity may be substantially underestimated.

Especies extendidas frecuentemente tiene diversidad genética no reconocida, y investigando los factores asociados con esta variación críptica puede ayudarnos a entender las fuerzas que impulsan la diversificación. Aquí, identificamos especies crípticas potenciales basadas en un conjunto de datos de códigos de barras de ADN mitocondrial de 2,333 individuos de aves de Panama en 429 especies, representando 391 (59%) de las 659 especies de aves terrestres residentes del país, además de algunas aves acuáticas muestreada de manera oportunista. Adicionalmente, complementamos estos datos con secuencias mitocondriales disponibles públicamente de otros loci, tal como ND2 o citocroma b, obtenidos de los genomas mitocondriales completos de 20 taxones. Utilizando los números de identificación de código de barras (en ingles: BINs), un sistema taxonómico numérico que proporcina una estimación imparcial de la diversidad potencial a nivel de especie, encontramos especies crípticas putativas en 19% de las especies de aves terrestres, lo que destaca la diversidad oculta en la avifauna bien descrita de Panamá. Aunque algunos de estos eventos de divergencia conciden con características geográficas que probablemente aislaron las poblaciones, la mayoría (74%) de la divergencia en las tierras bajas se encuentra entre las poblaciones orientales y occidentales. El tiempo de esta divergencia no coincidió entre los taxones, sugiriendo que eventos históricos tales como la formación del Istmo de Panamá y los ciclos climáticos del pleistoceno, no fueron los principales impulsores de la especiación. En cambio, observamos asociaciones fuertes entre las características ecológicas y la divergencia mitocondriale: las especies del bosque, sotobosque, con una dieta insectívora, y con territorialidad fuerte mostraton múltiple BINs probables. Adicionalmente, el índice mano-ala, que está asociado a la capacidad de dispersión, fue significativamente menor en las especies con BINs multiples, sugiriendo que la capacidad de dispersión tiene un rol importamente en la generación de la diversidad de las aves neotropicales. Estos resultos demonstran la necesidad de que estudios evolutivos de las comunidades de aves tropicales consideren los factores ecológicos en conjunto con las explicaciones geográficos.

Mosquito-host interactions during and after an outbreak of equine viral encephalitis in Eastern Panama.

Mosquito blood meals provide information about the feeding habits and host preference of potential arthropod-borne disease vectors. Although mosquito-borne diseases are ubiquitous in the Neotropics, few studies in this region have assessed patterns of mosquito-host interactions, especially during actual disease outbreaks. Based on collections made during and after an outbreak of equine viral encephalitis, we identified the source of 338 blood meals from 10 species of mosquitoes from Aruza Abajo, a location in Darien province in eastern Panama. A PCR based method targeting three distinct mitochondrial targets and subsequent DNA sequencing was used in an effort to delineate vector-host relationships. At Aruza Abajo, large domesticated mammals dominated the assemblage of mosquito blood meals while wild bird and mammal species represented only a small portion of the blood meal pool. Most mosquito species fed on a variety of hosts; foraging index analysis indicates that eight of nine mosquito species utilize hosts at similar proportions while a stochastic model suggests dietary overlap among species was greater than would be expected by chance. The results from our null-model analysis of mosquito diet overlap are consistent with the hypothesis that in landscapes where large domestic animals dominate the local biomass, many mosquito species show little host specificity, and feed upon hosts in proportion to their biomass, which may have implications for the role of livestocking patterns in vector-borne disease ecology.

Insect-induced gene expression at the core of volatile terpene release in Medicago truncatula.

The blends of induced volatiles released by higher plants in response to herbivory regularly contain terpenoids. The precursors of volatile terpenoids can be synthesized via two pathways, the mevalonate (MVA) and the methyl erythritol 4-phosphate (MEP) pathways localized in the cytosol and in plastids, respectively. Terpenes are important players in interactions between plants and herbivorous insects, by acting in both direct and indirect defenses. We recently characterized a gene encoding an (E)-beta-ocimene synthase (MtEBOS) in the legume Medicago truncatula Gaertn. Compared to undamaged plants, caterpillar-damaged M. truncatula emitted (E)-beta-ocimene at an elevated level and this increase is associated with high levels of expression of MtEBOS mRNA. Exogenous treatment with jasmonic acid also increases transcript accumulation of MtEBOS. These results indicate that transcript accumulation is used as a tightly regulated mechanism to control (E)-beta-ocimene emission. The data, along with additional findings in other species, illustrate that like most plant families legumes regulate the final steps of volatile terpene biosynthesis at the level of transcript induction.

Medicago truncatula (E)-beta-ocimene synthase is induced by insect herbivory with corresponding increases in emission of volatile ocimene.

Virtually all plants are able to recognize attack by herbivorous insects and release volatile organic compounds (VOC) in response. Terpenes are the most abundant and varied class of insect-induced VOC from plants. Four genes encoding putative terpene synthases (MtTps1, MtTps2, MtTps3 and MtTps4) were shown to accumulate in Medicago truncatula Gaertn. in response to Spodoptera exigua (Hübner) feeding and methyl jasmonate treatment in a previous study [S.K. Gomez, M.M. Cox, J.C. Bede, K.K. Inoue, H.T. Alborn, J.H. Tumlinson, K.L. Korth, Lepidopteran herbivory and oral factors induce transcripts encoding novel terpene synthases in Medicago truncatula, Arch. Insect Biochem. Physiol. 58 (2005) 114-127.] The focus of the current study is the functional characterization of one (MtTps4) of these four genes. Using an M. truncatula cDNA clone, the insect-inducible putative terpene synthase was expressed in Escherichiacoli and shown to convert geranyl diphosphate (GPP) into the monoterpene (E)-beta-ocimene as the major product. The clone was therefore designated M. truncatula (E)-beta-ocimene synthase (MtEBOS). Transcripts encoding this enzyme accumulate in M. truncatula leaves in response to exogenous jasmonic acid treatments, lepidopteran herbivory, and lepidopteran oral secretions. Treatment with the ethylene precursor, 1-aminocyclopropane-1-carboxylic acid (ACC) did not cause an increase in MtEBOS transcripts. The volatile (E)-beta-ocimene was released from leaves of both undamaged and insect-damaged plants, but at levels two-fold higher in insect-damaged M. truncatula. Although leaves have low constitutive levels of MtEBOS transcripts, RNA blot analysis indicates no constitutive expression in flowers, stems or roots. The strong insect-induced expression of this gene, and its correspondence with release of volatile ocimene, suggest that it plays an active role in indirect insect defenses in M. truncatula.