Trace metals concentration in water hyacinth implicates the saltwater barrage altered hydrography of Kochi backwaters, southwest Coast of India.

This study in the Kochi backwaters (KBW) presents the distribution of 9 trace metals (Fe, Zn, Cu, Mn, Ni, Co, Cr, Cd, Pb) in different parts (root, stolon and leaf) of the common water hyacinth Eichhornia crassipes during three different seasons [Pre-Monsoon (PRM), Southwest Monsoon (SWM), and Northeast Monsoon (NEM)]. The hyacinth was collected from 4 sections upstream of the KBW where a saltwater barrage [Thannermukkom Barrage (TB)] prevents saltwater intrusion. Results showed that regardless of seasons, all the trace metals concentration in different parts of Eichhornia varied in the following order: roots > stolon > leaves. All the trace metals except Fe showed their highest concentration during the PRM when TB introduces stagnancy of the water upstream through flow restrictions. Instead, Fe was high during the SWM associated with increased river influx at that time. Overall results showed that the hydrographical alterations of TB upstream of KBW have clear imprints on the trace metals concentrated in the hyacinth Eichhornia crassipes.

Coccolithophores: an environmentally significant and understudied phytoplankton group in the Indian Ocean.

Coccolithophores are unique primary producers in the ocean with the ability to calcify. They are known to produce calcareous scales, which form the significant part of calcite oozes or chalk deposits on the seafloor. Coccolithophores are very noteworthy and they are explored to a great extent as nannofossils to reconstruct the past climate. Calcite plates in coccolithophores make them a vital tool in global climate change studies specifically with ocean acidification. These microscopic plants are the major contributor of the carbonate rain that controls the inorganic carbon pump in the ocean, which in turn influences both carbon and carbonate cycles. The emergence of advanced techniques enables us to study the biological aspects of this pelagic calcifier with improved precision. But still, they are understudied world over compared to any other phytoplankton groups. The northern Indian Ocean, being landlocked in three sides and vulnerable to climate change and ocean acidification, severely lacks focused studies on coccolithophores, though the US JGOFS in the 1990s have outlined the ecological significance of coccolithophores in the Arabian Sea. This paper reviews and outlines our understanding of coccolithophores as well as the nix in the northern Indian Ocean.

Impact of a large hydraulic barrage on the trace metals concentration in mesozooplankton in the Kochi backwaters, along the Southwest coast of India.

This study delineates the impact of a man-made hydrological barrage [Thannermukkom barrage (TB)] on the concentration of selected trace metals (Fe, Zn, Cu, Co, Cr, Mn, Ni, Pb) in mesozooplankton from the Kochi backwaters (KBW). The overall results point out that during Pre-Southwest Monsoon (PRM), the concentration of trace metals in mesozooplankton was high in the upstream due to the closure of the barrage, which essentially causes stagnancy of the waters. Trace metal concentrations in the downstream and upstream regions of KBW were found to be lower during Post- Southwest Monsoon (PSWM) compared to the rest of the seasons. In general, trace metals in mesozooplankton from the KBW showed the following order of concentration: Fe > Mn > Zn > Ni > Cu > Cr > Co > Pb. A comparison with earlier data across the globe showed that trace metal concentration in mesoplankton in the KBW is lower than the values reported from other parts of the world.

Impact of salinity on the grazing rate of a cladocera (Latonopsis australis) in a large tropical estuarine system.

Cladocerans are ecologically important as active grazers at the secondary trophic level, and they are economically important in aquaculture as potential live feed for many commercially valuable fishes. This study deals with the effect of salinity on grazing of the rare cladocera Latonopsis australis. The experimental specimens were collected from the lower reaches of the Kochi backwaters, the largest estuarine system along the west coast of India, during the Pre-Southwest Monsoon (May 2015), and their cultures developed in the laboratory. Eight experimental salinity treatments (freshwater, 2, 4, 6, 8, 10, 12 and 14 salinity) with three life phases of the specimens (phase I: neonates with a developed digestive tract, phase II: adults carrying egg and phase III: adults carrying developing neonates) were carried out to measure their grazing rates. Two different approaches, namely individual-specific and biovolume-specific grazing measurements, were adopted in the study. The results showed a significant influence of salinity on the size and grazing rates of L. australis, irrespective of their life phases. Filtration and ingestion rates of the specimens also varied significantly between different life phases with the lowest rates in phase III. Irrespective of the life phases, grazing rates were the highest in freshwater conditions, which decreased to 25-84% in medium salinity (4-8) and 65-93% in high salinity (10-14). Further, the study demonstrated that size/biovolume/weight-based quantification of cladocera grazing provides a more precise method for the estimation of feeding rates compared to the individual-basic approach. This study emerges as the first attempt to quantify the grazing measurements of a cladocera from Indian waters.

Feeding preference and daily ration of 12 dominant copepods on mono and mixed diets of phytoplankton, rotifers, and detritus in a tropical coastal water.

Results of the experimental studies on the feeding habit and daily ration (DR) of 12 dominant copepods from a tropical coastal water (off Kochi, Southwest coast of India) on different food items (phytoplankton, rotifers, and detritus) are presented. Even though, all species of copepods consumed all types of food items in the experiments, they showed noticeable feeding preferences, having important ecological implications. Calanoid Paracalanus parvus and Acrocalanus gracilis consumed phytoplankton and rotifers equally in mono diets (74-89% of DR) and mixed diets (53-82% of DR), which indicated their ability to shift their diet in natural environment based on the availability of food items. Calanoid Acartia erythraea and A. danae consumed more phytoplankton (DR 83 and 72%, respectively) than rotifers (DR 51 and 46%, respectively) in mono diets, and in mixed diets, their consumption was high in phytoplankton combined food mixtures (P + R DR and P + D DR) rather than the R + D food type, indicated their preference for mixed diets of phytoplankton. Similarly, Calanoid Temora turbinata, Pseudodiaptomus serricaudatus, and Centropages tenuiremis preferred a herbivorous diet as evidenced by their high ingestion rate on phytoplankton mono (70 to 87% to their DR) and mixed diets (58 to 80% of DR). On the other hand, Cyclopoid Oithona similis and Poecilostomatoid Corycaeus danae preferred a carnivorous diet, consuming more rotifers (> 80% of DR) than phytoplankton (18-20% of DR) and detritus (5-6% of DR). Harpacticoids Macrosetella gracilis and Euterpina acutifrons equally preferred phytoplankton (78-92% of DR) and detritus (65-89% of DR). The study showed that the dominant copepods in the coastal waters off Kochi occupy different trophic niches available in the environment, which may be applicable in other similar environments as well.

Copepod grazing and their impact on phytoplankton standing stock and production in a tropical coastal water during the different seasons.

The grazing rate of copepods on the total and size-fractionated phytoplankton biomass in a coastal environment (off Kochi, southwest coast of India) were measured during pre-monsoon (PRM), peak southwest monsoon (PKSWM), late southwest monsoon (LSWM) and post-southwest monsoon (PSWM). The phytoplankton standing stock (chlorophyll a-Chl. a) and growth rate (GR) were less during the PRM (Chl. a 0.58 mg m-3; GR 0.23 ± 0.02) and PSWM (Chl. a 0.89 mg m-3; GR 0.30 ± 0.05) compared to PKSWM (Chl. a 6.67 mg m-3; GR 0.43 ± 0.02) and LSWM (Chl. a 4.09 mg m-3; GR 0.40 ± 0.04). The microplankton contribution to the total Chl. a was significant during the PKSWM (41.83%) and LSWM (45.72%). Copepod density was lesser during the PRM (1354 No m-3) and PSWM (1606 No m-3) than during PKSWM and LSWM (4571 and 3432 No m-3, respectively). Seasonal changes in phytoplankton biomass, phytoplankton size structure, and copepod community were closely related to the hydrographical transformations in the study domain. Dominant calanoid copepods in the study region ingested 8.4 to 14.2% of their daily ration from phytoplankton during the PRM and PSWM, which increased to >50% during the PKSWM and LSWM. The cyclopoid Oithona similis was abundant during the PKSWM, ingesting only 21% of their daily ration from phytoplankton. Temporal variation in the phytoplankton biomass and copepod species composition caused differences in community level top-down control. The copepod community ingestion on phytoplankton was high during the LSWM (18,583 µg C m-3d-1), followed by PKSWM (9050 µg C m-3d-1), PSWM (1813 µg C m-3d-1), and PRM (946 µg C m-3d-1). During the low Chl. a period (PRM and PSWM), dominant calanoid copepods showed a positive selectivity for the micro- and nano-phytoplankton size fractions, whereas during the high Chl. a period (PKSWM and LSWM), they showed a positive selection for nano-phytoplankton fractions. Irrespective of the seasons, dominant calanoid copepods showed a negative selection of pico-phytoplankton fraction. The cyclopoid O. similis and Poecilostomatoid Corycaeus danae showed a positive selection of nano- and pico-phytoplankton fractions rather than micro-fraction. The grazing pressure of copepod community ingestion on micro-fraction was less (0.56% of the phytoplankton biomass and 1.06% of the phytoplankton production) during the PKSWM. This study provides, for the first time, clear findings on the seasonal variation in the top-down control of phytoplankton by copepods in a tropical coastal water ecosystem and discusses its implications on phytoplankton blooming, plankton food web, and biogeochemistry.

The influence of droplet size on the stability, in vivo digestion, and oral bioavailability of vitamin E emulsions.

Vitamin E (α-tocopherol) is a nutraceutical compound, which has been shown to possess potent antioxidant and anticancer activity. However, its biological activity may be limited by its poor bioavailability. Colloidal delivery systems have shown wide applications in the food and pharmaceutical industries to deliver lipophilic bioactive compounds. In this study, we have developed conventional and nanoemulsions of vitamin E from food grade ingredients (sunflower oil, saponin, and water) and showed the nanoemulsion formulation increased the oral bioavailability when compared to the conventional emulsion. The mean droplet diameters in the nano and conventional emulsions were 0.277 and 1.285 µm, respectively. The stability of the emulsion formulation after thermal processing, long-term storage at different temperatures, mechanical stress and in plasma was determined. The results showed that the saponin coated nanoemulsion was stable to droplet coalescence during thermal processing (30-90 °C), long-term storage and mechanical stress when compared to the conventional emulsion. The biological fate of the emulsion formulations were studied using male Wistar rats as an animal model. The emulsion droplet stability during passage through the gastrointestinal tract was evaluated by their introduction into rat stomachs. Microscopy was used to investigate the structural changes that occurred during digestion. Both the conventional emulsion and nanoemulsion formulations showed strong evidence of droplet flocculation and coalescence during in vivo digestion. The in vivo oral bioavailability study revealed that vitamin E in a nanoemulsion form showed a 3-fold increase in the AUC when compared to the conventional emulsion. The information reported in this study will facilitate the design of colloidal delivery systems using nanoemulsion formulations.

Structure and stability of water chains (H2O)n, n = 5-20.

The structure and stability of linear (helical) water chains (H2O)n, n = 5-20 as obtained from ab initio/DFT calculations are reported along with an atoms-in-molecules (AIM) analysis of hydrogen bond critical points and their characteristics. The resulting helical chain arrangement is one of the predominant motifs in different host environments; although they may not be the most stable, it is shown that these linear water chain clusters could exist in their own right.

Genetic rearrangements occurring during a single cycle of murine leukemia virus vector replication: characterization and implications.

Retroviruses evolve at rapid rates, which is presumably advantageous for responding to selective pressures. Understanding the basic mutational processes involved during retroviral replication is important for comprehending the ability of retroviruses to escape immunosurveillance and antiviral drug treatment. Moreover, since retroviral vectors are important vehicles for somatic cell gene therapy, knowledge of the mechanism of retroviral variation is critical for anticipating untoward mutational events occurring during retrovirus-medicated gene transfer. The focus of this report is to examine the spectrum of genomic rearrangements arising during a single cycle of Moloney murine leukemia virus (MoMLV) vector virus replication. An MoMLV vector containing the herpes simplex virus thymidine kinase (tk) gene was constructed. MoMLV vector virus was produced in packaging lines, and target cells were infected. From a total of 224 mutant proviruses analyzed, 114 had gross rearrangements readily detectable by Southern blotting. The remaining proviruses were of parental size. PCR and DNA sequence analysis of 73 of the grossly rearranged mutant proviruses indicated they resulted from deletions, combined with insertions, duplications, and complex mutations that were a result of multiple genomic alterations in the same provirus. Complex hypermutations distinct from those previously described for spleen necrosis virus and human immunodeficiency virus were detected. There was a correlation between the mutation breakpoints and single-stranded regions in the predicted viral RNA secondary structure. The results also confirmed that the tk gene is inactivated at an average rate of about 8.8% per cycle of retroviral replication, which corresponds to a rate of mutation of 3%/kbp.

Mutations of conserved cysteine residues in the CWLC motif of the oncoretrovirus SU protein affect maturation and translocation.

The envelope glycoprotein complex is composed of two polypeptides, an external heavily glycosylated polypeptide (SU) and a membrane-spanning protein (TM). Together they form a heterodimer on the surface of the virion. These proteins are synthesized in the form of a polyprotein precursor which is glycosylated and proteolytically processed during its maturation in the secretory pathway. A highly conserved stretch of four amino acids, CWLC, has been identified in most known oncoretroviral SU proteins, about two-thirds of the distance from the amino terminus. To study the significance of this sequence for the structure and/or function of SU, cysteine to serine mutations were made in reticuloendotheliosis virus strain A. Initial studies showed that substitution of either one or both cysteines resulted in the production of noninfectious virus. Furthermore, immunoprecipitations and pulse-chase analysis demonstrated that the mutants yielded envelope polyprotein precursors which were stable. However, the polyprotein precursors were not proteolytically processed into SU and TM, and immunoprecipitations indicate that the immature polyproteins form aggregates, suggesting that the mutations interfere with proper folding. Although not proteolytically processed, at least one of the mutant glycoproteins appeared to be efficiently transported to the cell surface. These studies indicate that changing either cysteine residue abrogates viral infectivity by affecting folding, inhibiting normal maturation of the envelope glycoproteins.

Pseudotyped REV/SRV retroviruses reveal restrictions to infection and host range within members of the same receptor interference group.

The reticuloendotheliosis virus (REV) group of retroviruses and type D simian retroviruses (SRV) belong to the same receptor interference group. The cellular receptor for these viruses has not yet been identified. In order to study the distribution of the receptor and to identify a receptor negative cell line, vector viral pseudotypes between REV and SRV were made. Using these viral pseudotypes, susceptibility to infection was examined in some rodent and marsupial cell lines. Infectivity assays with these envelope pseudotypes demonstrated that all cell types tested were resistant to infection. However, treatment of the rodent cells with the N-linked glycosylation inhibitor tunicamycin rendered most of the cells susceptible to infection. These results indicate that all the rodent cells tested express a nonfunctional receptor for viruses of the REV and SRV groups, which can be made functional by tunicamycin treatment. A difference in receptor host range among members of the same receptor interference group was observed which suggests that the REV/SRV receptor for this interference group might be differentially modified in different cell types. The studies also identified at least one cell line not expressing the REV/SRV receptor which should be useful for isolating the gene encoding the receptor.