Update of the Xylella spp. host plant database - systematic literature search up to 30 June 2023.

This scientific report provides an update of the Xylella spp. host plant database, aiming to provide information and scientific support to risk assessors, risk managers and researchers dealing with Xylella spp. Upon a mandate of the European Commission, EFSA created and regularly updates a database of host plant species of Xylella spp. The current mandate covers the period 2021-2026. This report is related to the ninth version of the database published in Zenodo in the EFSA Knowledge Junction community, covering literature published from 1 January 2023 up to 30 June 2023, and recent Europhyt outbreak notifications. Informative data have been extracted from 47 selected publications. Seven new host plants were identified and added to the database. These plant species were naturally infected by X. fastidiosa subsp. multiplex in France, Spain and the United States. No additional data were retrieved for X. taiwanensis, and no additional multilocus sequence tipes (STs) were identified worldwide. New information on the tolerant/resistant response of plant species to X. fastidiosa infection were added to the database. The Xylella spp. host plant species were listed in different categories based on the number and type of detection methods applied for each finding. The overall number of Xylella spp. host plants determined with at least two different detection methods or positive with one method (between sequencing and pure culture isolation (category A), reaches now 439 plant species, 200 genera and 69 families. Such numbers rise to 696 plant species, 307 genera and 88 families if considered regardless of the detection methods applied (category E).

Update of the Xylella spp. host plant database - systematic literature search up to 31 December 2022.

This scientific report provides an update of the Xylella spp. host plant database, aiming to provide information and scientific support to risk assessors, risk managers and researchers dealing with Xylella spp. Upon a mandate of the European Commission, EFSA created and regularly updates a database of host plant species of Xylella spp. The current mandate covers the period 2021-2026. This report is related to the eighth version of the database published in Zenodo in the EFSA Knowledge Junction community, covering literature published from 1 July 2022 up to 31 December 2022, and recent Europhyt outbreak notifications. Informative data have been extracted from 21 selected publications. Twelve new host plants were identified and added to the database. Nine plant species were reported from Portugal and naturally infected by subsp. multiplex or unknown (i.e. not reported). Three plant species were successfully artificially infected by subsp. fastidiosa. No additional data were retrieved for X. taiwanensis, and no additional STs were identified worldwide. New information on the tolerant/resistant response of plant species to X. fastidiosa infection were added to the database. The overall number of Xylella spp. host plants determined with at least two different detection methods or positive with one method (between sequencing and pure culture isolation) reaches now 433 plant species, 197 genera and 68 families. Such numbers rise to 690 plant species, 306 genera and 88 families if considered regardless of the detection methods applied.

Update of the Xylella spp. host plant database - systematic literature search up to 30 June 2022.

This scientific report provides an update of the Xylella spp. host plant database, aiming to provide information and scientific support to risk assessors, risk managers and researchers dealing with Xylella spp. Upon a mandate of the European Commission, EFSA created and regularly updates a database of host plant species of Xylella spp. The current mandate covers the period 2021-2026. This report is related to the seventh version of the database published in Zenodo in the EFSA Knowledge Junction community, covering literature published from 1 January 2022 up to 30 June 2022, and recent Europhyt outbreak notifications. Informative data have been extracted from 30 selected publications. Fifteen new host plants were identified and added to the database. Those plant species were reported from Brazil, France, Italy, Portugal and Spain, and infected by subsp. multiplex, pauca or unknown (i.e. not reported). No additional data were retrieved for X. taiwanensis. Two new STs (namely ST88 and ST89) belonging to subspecies multiplex were identified in host plants in natural conditions, and new information on the tolerant/resistant response of plant species to X. fastidiosa infection were added to the database. The overall number of Xylella spp. host plants determined with at least two different detection methods or positive with one method (between sequencing and pure culture isolation) reaches now 423 plant species, 194 genera and 68 families. Such numbers rise to 679 plant species, 304 genera and 88 families if considered regardless of the detection methods applied.

Update of the Xylella spp. host plant database - systematic literature search up to 31 December 2021.

This Scientific report provides an update of the Xylella spp. host plant database, aiming to provide information and scientific support to risk assessors, risk managers and researchers dealing with Xylella spp. Upon a mandate of the European Commission, EFSA created and regularly updated a database of host plant species of Xylella spp. The current mandate covers the period 2021-2026. This report is related to the sixth version of the database published in Zenodo in the EFSA Knowledge Junction community, covering literature published from 1 July 2021 up to 31 December 2021, and recent Europhyt outbreak notifications. Informative data have been extracted from 29 selected publications. Eleven new host plants were identified and added to the database: six plant species naturally infected by subsp. multiplex of X. fastidiosa in the EU (France, Italy and Portugal) and five plant species artificially infected by different X. fastidiosa subspecies (multiplex, pauca, fastidiosa and sandyi). No additional data were retrieved for X. taiwanensis. New information on the tolerant/resistant response of plant species to X. fastidiosa infection were added, while no new STs have been identified worldwide compared to the previous update published in January 2022. The overall number of Xylella spp. host plants determined with at least two different detection methods or positive with one method (between: sequencing, pure culture isolation) reaches now 412 plant species, 190 genera and 68 families. Such numbers rise to 664 plant species, 299 genera and 88 families if considered regardless of the detection methods applied.

Update of the Xylella spp. host plant database - systematic literature search up to 30 June 2021.

Following a request from the European Commission, EFSA was asked to create and regularly update a database of host plant species of Xylella spp. The mandate now covers the period 2021-2026 and EFSA is requested to release an update of the database twice per year. The aim of the database is to provide information and scientific support to risk assessors, risk managers and researchers dealing with Xylella spp. This report is related to the fifth version of the database published in Zenodo in the EFSA Knowledge Junction community, covering literature published from 1 January 2021 up to 30 June 2021, and recent Europhyt outbreak notifications. Informative data have been extracted from 41 selected publications. Nineteen new host plants were identified and added to the database since the previous update published in June 2021. Those plant species were reported naturally infected by subsp. multiplex or unknown (i.e. not reported in the publication) of X. fastidiosa in the UE (France, Spain and Portugal). No additional data were retrieved for X. taiwanensis. New information on the tolerant/resistant response of plant species to X. fastidiosa infection were added, while no new STs have been identified worldwide compared to the previous update published in May 2021. The overall number of Xylella spp. host plants determined with at least two different detection methods or positive with one method (between: sequencing, pure culture isolation) now reaches 407 plant species, 185 genera and 68 families. Such numbers raise to 655 plant species, 293 genera and 88 families if considered regardless of the detection method applied.

Update of the Xylella spp. host plant database - systematic literature search up to 31 December 2020.

Following a request from the European Commission, EFSA was asked to create and regularly update a database of host plant species of Xylella spp. Complying with an extension of the previous mandate, which now covers the period 2021-2026, the current version of Xylella spp. host plant database updates the previous release dated April 2020. Informative data have been extracted from 86 recent publications retrieved through an extensive literature search. This report is related to the fourth version of the database published in Zenodo in the EFSA Knowledge Junction community, covering articles selected from: a systematic literature review conducted up to 31 December 2020, Europhyt outbreak notifications up to 18 March 2021 and communications from research groups and national authorities. Forty-three new host plant species of X. fastidiosa, identified through the data extracted from the selected publications, have been added to the database. Those plant species were reported as naturally or artificially infected by subsp. fastidiosa, multiplex, pauca or unknown (i.e. not reported in the publication) subspecies of X. fastidiosa. New information on the tolerant/resistant response of plant species or varieties to X. fastidiosa infection is also reported. No additional data were retrieved for X. taiwanensis. This new version of the database includes no update on the number of Sequence Types (STs) identified so far, which remains unchanged. The overall number of Xylella spp. host plants determined with at least two different detection methods or positive with one method (between: sequencing, pure culture isolation) reaches now 385 plant species, 179 genera and 67 families. Such numbers rise to 638 plant species, 289 genera and 87 families if considered regardless of the detection method applied. The database will be issued twice per year, with the aim to provide information and scientific support to risk assessors, risk managers and researchers dealing with Xylella spp.

Database on apple fruit pests of the EU to support pest risk assessments.

In December 2013, EFSA received a first mandate from the European Commission DG SANTE to gather information on the pests of apple fruit (Malus domestica) in the EU territory (M-2014-0016). To satisfy the mandate, EFSA developed an overall approach to systematically collect information on EU apple pests and to organise it within a bespoke database with support from the Austrian Agency for Health and Food Safety. Test data were collected for 12 apple pests (6 insects and 6 pathogens). Based on the experience gathered, the initial database structure was adapted and refined by EFSA, permitting more efficient data gathering. In September 2017, as a follow-up to the original mandate, EFSA was requested by the European Commission DG SANTE to test the suitability of the revised database in supporting risk assessors in third countries to carry out pest risk assessments of apple fruit as a commodity (M-2017-0203). As a first step, the data set on the 12 pests was migrated into the newly revised database structure. This was then converted into the MicroStrategy platform to provide a user-friendly interface for data search and visualisation. At the same time, a new data entry tool using the systematic literature review software DistillerSR was created to enhance data extraction for future data collections. The interactive data reports were shared with the Canadian Food Inspection Agency (CFIA) and the Ministry for Primary Industries (MPI) in New Zealand for their testing and feedback as potential future users of the database. The overall feedback collected from CFIA and MPI confirms that the EU database on apple fruit pests could become an important tool to provide third countries the necessary technical and biological information for their pest risk assessments. Addressing feedback from CFIA and MPI has further improved the database structure and metadata. The database of apple pests can be included in the EFSA Scientific Data Warehouse and extended to provide a comprehensive list of pests and host plants.

Vector-borne diseases.

After a request from the European Commission, EFSA's Panel on Animal Health and Welfare summarised the main characteristics of 36 vector-borne diseases (VBDs) in https://efsa.maps.arcgis.com/apps/PublicGallery/index.html?appid=dfbeac92aea944599ed1eb754aa5e6d1. The risk of introduction in the EU through movement of livestock or pets was assessed for each of the 36 VBDs individually, using a semiquantitative Method to INTegrate all relevant RISK aspects (MINTRISK model), which was further modified to a European scale into the http://www3.lei.wur.nl/mintrisk/ModelMgt.aspx. Only eight of the 36 VBD-agents had an overall rate of introduction in the EU (being the combination of the rate of entry, vector transmission and establishment) which was estimated to be above 0.001 introductions per year. These were Crimean-Congo haemorrhagic fever virus, bluetongue virus, West Nile virus, Schmallenberg virus, Hepatozoon canis, Leishmania infantum, Bunyamwera virus and Highlands J. virus. For these eight diseases, the annual extent of spread was assessed, assuming the implementation of available, authorised prevention and control measures in the EU. Further, the probability of overwintering was assessed, as well as the possible impact of the VBDs on public health, animal health and farm production. For the other 28 VBD-agents for which the rate of introduction was estimated to be very low, no further assessments were made. Due to the uncertainty related to some parameters used for the risk assessment or the instable or unpredictability disease situation in some of the source regions, it is recommended to update the assessment when new information becomes available. Since this risk assessment was carried out for large regions in the EU for many VBD-agents, it should be considered as a first screening. If a more detailed risk assessment for a specific VBD is wished for on a national or subnational level, the EFSA-VBD-RISK-model is freely available for this purpose.