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1.
Mitochondrial DNA B Resour ; 6(8): 2393-2395, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34345705

RESUMO

The mitogenome of the South American parthenogenetic lizard Loxopholis percarinatum Müller, 1923 (Squamata: Gymnophthalmidae), a uni-bisexual species complex, was recovered for three individuals from Rio Negro region, Amazonas, Brazil. The content and order of genes are typical for vertebrate mitochondrial genomes, and we recovered 13 protein-coding genes, 22 tRNA, and two rRNA (12S and 16S), in addition to partial fragments of the Control Region. A maximum likelihood phylogenetic analysis with mitogenomes of selected lizard families recovered L. percarinatum with Iphisa elegans Gray, 1851, the only other Gymnophthalmidae species available in GenBank.

2.
Evolution ; 75(10): 2371-2387, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-34375460

RESUMO

The role of historical factors in establishing patterns of diversity in tropical mountains is of interest to understand the buildup of megadiverse biotas. In these regions, the historical processes of range fragmentation and contraction followed by dispersal are thought to be mediated by the interplay between rugged relief (complex topography) and climate fluctuations and likely explain most of the dynamics of diversification in plants and animals. Although empirical studies addressing the interaction between climate and topography have provided invaluable insights into population divergence and speciation patterns in tropical montane organisms, a more detailed and robust test of such processes in an explicit spatio-temporal framework is still lacking. Consequently, our ability to gain insights into historical range shifts over time and the genomic footprint left by them is limited. Here, we used niche modeling and subgenomic population-level datasets to explore the evolution of two species of warbling finches (genus Microspingus) disjunctly distributed across the Montane Atlantic Forest, a Neotropical region with complex geological and environmental histories. Population structure inferences suggest a scenario of three genetically differentiated populations, which are congruent with both geography and phenotypic variation. Demographic simulations support asynchronous isolation of these populations as recently as ∼40,000 years ago, relatively stable population sizes over recent time, and past gene flow subsequent to divergence. Throughout the last 800,000 years, niche models predicted extensive expansion into lowland areas with increasing overlap of species distributions during glacial periods, with prominent retractions and isolation into higher altitudes during interglacials, which are in line with signs of introgression of currently isolated populations. These results support a dual role of cyclical climatic changes: population divergence and persistence in mountain tops during warm periods followed by periods of expansion and admixture in lower elevations during cold periods. Our results underscore the role of the interplay between landscape and climate as an important mechanism in the evolution of the Neotropical montane biota.


Assuntos
Clima , Passeriformes , Animais , Fluxo Gênico , Variação Genética , Geografia , Filogenia
3.
PLoS One ; 15(1): e0227759, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-31935265

RESUMO

We investigated the species diversity of Mycobacteriaceae in surface water samples from six environments at the zoological park in São Paulo, Brazil. Three hundred and eighty isolates were cultivated and identified by phenotypic characteristics (growth rate and pigmentation) and sequencing of hsp65, rpoB and 16S rRNA genes. The results revealed that almost 48% of the isolates could be identified at the species level; about 50% were classified at the genus level, and only less than 2% of the isolates showed an inconclusive identification. The isolates classified at the genus level and not identified were then evaluated by phylogenetic analyses using the same three concatenated target genes. The results allowed us to identify at the genus level some isolates that previously had inconclusive identification, and they also suggested the presence of putative candidate species within the sample, demonstrating that this zoological park is an important source of diversity.


Assuntos
Mycobacteriaceae/genética , Microbiologia da Água , Brasil , DNA Bacteriano/genética , Genes Bacterianos , Genômica , Mycobacteriaceae/classificação , Mycobacteriaceae/isolamento & purificação , Parques Recreativos , Filogenia , RNA Ribossômico 16S/genética
4.
Mol Phylogenet Evol ; 135: 105-122, 2019 06.
Artigo em Inglês | MEDLINE | ID: mdl-30731120

RESUMO

In vertebrates, true parthenogenesis is found only in squamate reptiles and (mostly) originates via interspecific hybridization after secondary contact. In many cases, parthenogenesis is followed by an increase of ploidy, resulting in triploid lineages. Phylogenetic analyses derived from nuclear and maternally inherited markers can help to clarify the mechanisms of origin and the potential parental species involved. In the Amazon region, parthenogenetic lizards of the Loxopholis percarinatum complex are widely distributed, comprising both diploid and triploid clones. Recently, putative males of L. percarinatum were reported, suggesting the existence of bisexual populations based on morphological data. Here, we used mitochondrial and nuclear data to investigate the origin of parthenogenesis in Loxopholis. Mitochondrial DNA analysis revealed three major lineages: unisexual/2n, unisexual/3n and bisexual, the last of which comprised two sub-lineages placed as the sister taxon to the unisexual/3n lineage. Genetic divergence among the lineages was ∼10% but was lower between the unisexual/3n and bisexual lineages (∼6%). Both mtDNA and nuDNA indicated that individuals from the bisexual lineages might belong to a new species. Nuclear DNA evidence indicates that crossings occasionally occur between unisexual 2n and males from the new bisexual species. Phylogenetic analysis of nuDNA showed L. ferreirai as the closest described bisexual species to the complex. Our results revealed an ancient origin of parthenogenesis in the L. percarinatum complex, in contrast to most young (Pleistocene) parthenogenetic lizards described thus far. Two hybridization events seem to have been involved: the first event occurred in late Miocene, between the ancestral lineage ("A") of the new bisexual species (as a maternal species) and the ancestral lineage of L. ferreirai, as a paternal species of L. percarinatum 2n; and the second event occurred in Pliocene-Pleistocene, in a backcross between L. percarinatum 2n and a male from the common ancestor ("B") of the new bisexual species giving rise to the lineage of L. percarinatum 3n. With these results, we showed that L. percarinatum complex also includes, at least, one undescribed bisexual species in addition to the two known parthenogenetic lineages (2n and 3n). Finally, we present evidence that diploid individuals of L. percarinatum experienced an event of wide demographic expansion over the past million years under an allele surfing model.


Assuntos
Ecossistema , Haplótipos/genética , Lagartos/genética , Mitocôndrias/genética , Partenogênese/genética , Folhas de Planta/fisiologia , Alelos , Animais , Teorema de Bayes , Núcleo Celular/genética , DNA Mitocondrial/genética , Hibridização Genética , Masculino , Filogenia , Filogeografia
5.
Zootaxa ; 4441(2): 332-346, 2018 Jun 27.
Artigo em Inglês | MEDLINE | ID: mdl-30314013

RESUMO

Amapasaurus is a monotypic genus of forest lizards never accessed molecularly and, based on morphological similarities, suggested to be closely related to species of the former Leposoma parietale group Ruibal 1952, currently in the genus Loxopholis Cope 1869. Two other species, formerly allocated in Arthrosaura (A. guianensis and A. hoogmoedi), were tentatively moved to Loxopholis in an extensive molecular revision of Gymnophthalmoidea. Here we add mitochondrial and nuclear sequence data (12S, cyt b, ND4, c-mos and NT3) of Amapasaurus to previously published and new data of all Ecpleopodini genera (except for Adercosaurus), in order to test: i) the close relationship between Amapasaurus and Loxopholis and ii) the position of Loxopholis guianensis and Loxopholis hoogmoedi with three different phylogenetic methods, expanding the knowledge on the current taxonomy of Ecpleopodini. Concatenated analyses of mitochondrial and nuclear data (2303 bp) under Bayesian Inference, Maximum Likelihood and Maximum Parsimony methods recovered a strongly supported sister relationship between Amapasaurus tetradactylus Cunha 1970 and species of Loxopholis. Genetic divergence between Amapasaurus and this assemblage of Loxopholis is high in both mitochondrial (~18% for cyt b) and nuclear (~12% for c-mos) regions, supporting its generic distinctiveness. Differing from the current taxonomy of the Ecpleopodini tribe, our analyses recovered Lo. guianensis and Lo. hoogmoedi as a distinct clade that is sister to all other Loxopholis plus Amapasaurus. Supplemented by external and hemipenial morphology data available from the literature along with DNA sequences, we restrict Loxopholis to the species of the former parietale group of Leposoma and describe a new genus to allocate Lo. guianensis and Lo. hoogmoedi.


Assuntos
Lagartos , Filogenia , Animais , Teorema de Bayes , Núcleo Celular , DNA Mitocondrial , Análise de Sequência de DNA
6.
Cladistics ; 32(6): 624-671, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34727678

RESUMO

We infer phylogenetic relationships within Teioidea, a superfamily of Nearctic and Neotropical lizards, using nucleotide sequences. Phylogenetic analyses relied on parsimony under tree-alignment and similarity-alignment, with length variation (i.e. gaps) treated as evidence and as absence of evidence, and maximum-likelihood under similarity-alignment with gaps as absence of evidence. All analyses produced almost completely resolved trees despite 86% of missing data. Tree-alignment produced the shortest trees, the strict consensus of which is more similar to the maximum-likelihood tree than to any of the other parsimony trees, in terms of both number of clades shared, parsimony cost and likelihood scores. Comparisons of tree costs suggest that the pattern of indels inferred by similarity-alignment drove parsimony analyses on similarity-aligned sequences away from more optimal solutions. All analyses agree in a majority of clades, although they differ from each other in unique ways, suggesting that neither the criterion of optimality, alignment nor treatment of indels alone can explain all differences. Parsimony rejects the monophyly of Gymnophthalmidae due to the position of Alopoglossinae relative to Teiidae, whereas support of Gymnophthalmidae by maximum-likelihood was low. We address various nomenclatural issues, including Gymnophthalmidae Fitzinger, 1826 being an older name than Teiidae Gray, 1827. We recognize three families in the arrangement Alopoglossidae + (Teiidae + Gymnophthalmidae). Within Gymnophthalmidae we recognize Cercosaurinae, Gymnophthalminae, Rhachisaurinae and Riolaminae in the relationship Cercosaurinae + (Rhachisaurinae + (Riolaminae + Gymnophthalminae)). Cercosaurinae is composed of three tribes-Bachiini, Cercosaurini and Ecpleopodini-and Gymnophthalminae is composed of three-Gymnophthalmini, Heterodactylini and Iphisini. Within Teiidae we retain the currently recognized three subfamilies in the arrangement: Callopistinae + (Tupinambinae + Teiinae). We also propose several genus-level changes to restore the monophyly of taxa.

7.
Zootaxa ; 4000(4): 401-27, 2015 Aug 18.
Artigo em Inglês | MEDLINE | ID: mdl-26623733

RESUMO

We describe a new genus and two new species of gymnophthalmid lizards based on specimens collected from Brazilian Amazonia, mostly in the "arc of deforestation". The new genus is easily distinguished from other Gymnophthalmidae by having very wide, smooth, and imbricate nuchals, arranged in two longitudinal and 6-10 transverse rows from nape to brachium level, followed by much narrower, strongly keeled, lanceolate, and mucronate scales. It also differs from all other Gymnophthalmidae, except Iphisa, by the presence of two longitudinal rows of ventrals. The new genus differs from Iphisa by having two pairs of enlarged chinshields (one in Iphisa); posterior dorsal scales lanceolate, strongly keeled and not arranged in longitudinal rows (dorsals broad, smooth and forming two longitudinal rows), and lateral scales keeled (smooth). Maximum parsimony, maximum likelihood, and Bayesian phylogenetic analyses based on morphological and molecular data indicate the new species form a clade that is most closely related to Iphisa. We also address several nomenclatural issues and present a revised classification of Gymnophthalmidae.


Assuntos
Lagartos/classificação , Filogenia , Distribuição Animal , Estruturas Animais/anatomia & histologia , Estruturas Animais/crescimento & desenvolvimento , Animais , Tamanho Corporal , Brasil , Ecossistema , Feminino , Lagartos/anatomia & histologia , Lagartos/genética , Lagartos/crescimento & desenvolvimento , Masculino , Dados de Sequência Molecular , Tamanho do Órgão , Terminologia como Assunto
8.
PLoS One ; 10(9): e0138446, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26379155

RESUMO

Sequence capture of ultraconserved elements (UCEs) associated with massively parallel sequencing has become a common source of nuclear data for studies of animal systematics and phylogeography. However, mitochondrial and microsatellite variation are still commonly used in various kinds of molecular studies, and probably will complement genomic data in years to come. Here we show that besides providing abundant genomic data, UCE sequencing is an excellent source of both sequences for microsatellite loci design and complete mitochondrial genomes with high sequencing depth. Identification of dozens of microsatellite loci and assembly of complete mitogenomes is exemplified here using three species of Poospiza warbling finches from southern and southeastern Brazil. This strategy opens exciting opportunities to simultaneously analyze genome-wide nuclear datasets and traditionally used mtDNA and microsatellite markers in non-model amniotes at no additional cost.


Assuntos
Tentilhões/genética , Marcadores Genéticos/genética , Genoma Mitocondrial/genética , Repetições de Microssatélites/genética , Animais , Brasil , DNA Mitocondrial/genética , Dados de Sequência Molecular , Filogenia , Análise de Sequência de DNA/métodos
9.
Mol Phylogenet Evol ; 81: 137-46, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25234242

RESUMO

The endemic Brazilian Enyalius encompasses a diverse group of forest lizards with most species restricted to the Atlantic Forest (AF). Their taxonomy is problematic due to extensive variation in color pattern and external morphology. We present the first phylogenetic hypothesis for the genus based on 2102 bp of the mtDNA (cyt-b, ND4, and 16S) and nuclear (c-mos) regions, uncovering all previously admitted taxa (9 spp). Different methods of tree reconstruction were explored with Urostrophus vautieri, Anisolepis grilli and A. longicauda as outgroups. The monophyly of Enyalius and its split into two deeply divergent clades (late Oligocene and early Miocene) is strongly supported. Clade A assembles most lineages restricted to south and southeastern Brazil, and within it Enyalius brasiliensis is polyphyletic; herein full species status of E. brasiliensis and E. boulengeri is resurrected. Clade B unites the Amazonian E. leechii as sister-group to a major clade containing E. bilineatus as sister-group to all remaining species from northeastern Brazil. We detected unrecognized diversity in several populations suggesting putative species. Biogeographical analyses indicate that Enyalius keeps fidelity to shadowed forests, with few cases of dispersal into open regions. Ancient dispersal into the Amazon from an AF ancestor may have occurred through northeastern Brazil.


Assuntos
Evolução Biológica , Lagartos/classificação , Filogenia , Animais , Teorema de Bayes , Brasil , DNA Mitocondrial/genética , Feminino , Florestas , Funções Verossimilhança , Lagartos/genética , Análise de Sequência de DNA
10.
Zootaxa ; 3635: 459-75, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-26097958

RESUMO

Leposoma sinepollex sp. nov., a new species of the scincoides group, is described from a mountain region in the Atlantic Forest central corridor in state of Bahia, Brazil. The new species is characterized by elongate dorsal and lanceolate ventral scales arranged in diagonal rows, a single and smooth frontonasal, five supraoculars, absence of pollex, third toe as long as or longer than fourth, absence of striations in lower part of head, parietals longer than wide and as long as interparietal, 27-29 dorsals, 25-29 scales around body, 17-19 ventrals, 12-14 total pores in the male (absent in females), 9-10 and 9-11 subdigital lamellae respectively under IV Finger and IV Toe, and strong sexual color dichromatism with a black pigmentation in the ventral parts of males, creamy in females. The new species is morphologically similar to Leposoma nanodactylus, sharing with it among other features the synapomorphic division of the first supraocular. Phylogenetic analyses of 981 bp of combined sequences (cyt b+ ND4) recovered also a strongly supported (PP = 1,0; BP = 100) sister relationship between both species. The new species and Leposoma nanodactylus are placed sister to all the other Atlantic Forest species, with L. baturitensis being the first to diverge in this radiation. We discuss the distribution of the Atlantic Forest Leposoma, as well as possible scenarios for the origin of the new species.


Assuntos
Lagartos/anatomia & histologia , Lagartos/classificação , Distribuição Animal , Animais , Brasil , Feminino , Membro Anterior/anatomia & histologia , Florestas , Lagartos/fisiologia , Masculino , Especificidade da Espécie
11.
Ital J Pediatr ; 38: 16, 2012 May 09.
Artigo em Inglês | MEDLINE | ID: mdl-22571554

RESUMO

An 8-year-old child during the first year of life manifested severe atopic dermatitis and chronic diarrhea with mucorrhea and rectal bleeding; a fish-free diet was started based on weakly positive skin-prick tests to codfish extract. At the age of 4 years the child began to suffer of recurrent pancreatitis. When he came to our attention for the evaluation of his fish allergy, he was asymptomatic; a weak reactivity to codfish was observed (SPTs: cod, 4 mm, sIgE ImmunoCAP: cod, 1.30 kU/l). The food challenge test with cod was negative. When the child ate cod again, within 5 minutes, developed anaphylactic reaction and complained of abdominal pain compatible with pancreatitis (enzyme serum levels risen and parenchymal oedema at ultrasonography), that resolved within 7 days after specific therapy. This case raises two issues: the elimination diet in asymptomatic food allergy on the basis only of SPT and the ethicality of food challenge in gastrointestinal chronic disease.


Assuntos
Hipersensibilidade Alimentar/imunologia , Gadus morhua/imunologia , Pancreatite/imunologia , Animais , Criança , Diagnóstico Diferencial , Hipersensibilidade Alimentar/diagnóstico , Hipersensibilidade Alimentar/terapia , Humanos , Masculino , Pancreatite/diagnóstico , Pancreatite/terapia , Recidiva
12.
Mol Phylogenet Evol ; 61(2): 446-59, 2011 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-21801842

RESUMO

Leposoma is a conspicuous component of leaf litter herpetofauna of South and Central American rainforests. The 15 bisexual and one parthenogenetic species are allocated to the parietale and scincoides groups based on morphology. Phylogenetic analyses of 1830 bp (mtDNA+nuclear) were performed on 63 specimens of four species from Amazonian and Panamanian rainforests, and six species and one undescribed form from the Atlantic Forest. Different methods of tree reconstruction were explored, with Anotosaura vanzolinia and Colobosauroides cearensis as outgroups. The monophyly of the parietale and scincoides groups is strongly supported. Contrary to previous hypotheses suggesting a recent contact between Atlantic and Amazon forests, our estimates point to an initial split in Miocene. The position of Leposoma baturitensis, endemic to relictual forests in the semiarid Caatingas northeastern Brazil, and its divergence from the remaining species of the Atlantic Forest, suggests an ancient isolation with no indication of a secondary contact with forests of the eastern coast. Our data do not permit unambiguous assignment of parental species of the unisexual Leposoma percarinatum or the mechanism involved in the origin of parthenogenesis, but revealed two highly divergent diploid and triploid lineages within L. percarinatum, indicating that the unisexuals represent a species complex.


Assuntos
Evolução Molecular , Lagartos/classificação , Partenogênese , Filogenia , Animais , Teorema de Bayes , Brasil , Núcleo Celular/genética , DNA Mitocondrial/genética , Geografia , Funções Verossimilhança , Lagartos/genética , Panamá , Análise de Sequência de DNA
13.
Genet. mol. biol ; 31(4): 887-892, Sept.-Dec. 2008. tab, ilus
Artigo em Inglês | LILACS | ID: lil-501459

RESUMO

The karyotypes of 23 specimens belonging to 16 species from nine genera of Brazilian marsupials (family Didelphidae) were studied. The animals were collected in eight localities of Cerrado or Atlantic Forest biomes in the states of Goiás, Tocantins and São Paulo. The karyotypes were analyzed after conventional Giemsa staining and silver staining of the nucleolus organizer regions (Ag-NORs). New karyotypic data were obtained for Gracilinanus microtarsus (2n = 14, FN = 24),Marmosops paulensis (2n = 14, FN = 24), Micoreus paraguayanus (2n = 14, FN = 20) and Monodelphis rubida (2n = 18, FN = 32) and are discussed in detail. The karyotypes of G. microtarsus, M. paulensis and M. paraguayanus include three large pairs of submetacentrics (pairs 1, 2 and 3) and a medium-sized metacentric or submetacentric pair 4. Pairs 5 and 6 are small submetacentrics in G. microtarsus and M. paulensis and acrocentrics in M. paraguayanus. M. paulensis presented a single Ag-NOR in pair 6 (6p6p), while M. paraguayanus exhibited multiple Ag-NORs in pairs 5 and 6 (5pq5pq6p6p). There was variation in size and morphology of the sex chromosomes among these species. Monodelphis rubida presented a karyotype with 2n = 18 and FN = 32 composed of a large submetacentric pair 1, a medium-sized metacentric pair 2 and six pairs of submetacentrics (pairs 3 through 8). The X was a small acrocentric and the Y was dot-like. A single Ag-NOR bearing pair (5p5p) characterized M. rubida. Relevant karyotypic information was obtained for 19 specimens belonging to 12 species collected in areas sampled for the first time [Caluromys lanatus and C. philander (2n = 14, FN = 20), Gracilinanus emiliae (2n = 14, FN = 24), Marmosa murina, Metachirus nudicaudatus and Micoureus demerarae (2n = 14, FN = 20), Monodelphis americana (2n = 18, FN = 32) and M. domestica (2n = 18, FN = 20), and Didelphis marsupialis, Philander frenata, P. opossum and P. sp (2n = 22, FN = 20)]. Although the karyotypes...


Assuntos
Animais , Gambás/genética , Região Organizadora do Nucléolo , Brasil , Análise Citogenética , Cariotipagem , Marsupiais/genética
14.
Genetica ; 134(3): 261-6, 2008 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-18058244

RESUMO

Kayotypes of four neotropical teiid lizard species (Tupinambinae) were herein studied after conventional as well as silver staining and CBG-banding: Crocodilurus amazonicus (2n = 34), Tupinambis teguixin (2n = 36), Tupinambis merianae and Tupinambis quadrilineatus (2n = 38). The karyological data for T. quadrilineatus as well as those obtained using differential staining for all species were unknown until now. The karyotypes of all species presented 12 macrochromosomes identical in morphology, but differed in the number of microchromosomes: 22 in C. amazonicus, 24 in T. teguixin and 26 in T. quadrilineatus and T. merianae. The Ag-NOR located at the secondary constriction at the distal end of pair 2 is shared by all species, contrasting with the variability observed for this character in species of the related Teiinae. CBG-banding revealed a species-specific pattern in T. quadrilineatus with conspicuous interstitial C-blocks at the proximal region of the long arm of pair 4 and the whole heterochromatic short arm of pair 6. The karyological data reported here corroborates the relationship hypothesis obtained for Tupinambis based on molecular characters. T. teguixin presents the putative ancestral karyotype for the genus with 2n = 36 whereas T. merianae and T. quadrilineatus exhibit 2n = 38, due to an additional pair of microchromosomes.


Assuntos
Variação Genética , Lagartos/genética , Animais , Brasil , Bandeamento Cromossômico , Cromossomos , Cariotipagem , Lagartos/classificação , Coloração pela Prata
15.
Genetica ; 131(3): 231-40, 2007 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-17206461

RESUMO

Karyotypes of five species of South American teiid lizards from subfamily Teiinae: Ameiva ameiva, Kentropyx calcarata, K. paulensis, K. vanzoi (2n = 50, all acrocentric), and Cnemidophorus ocellifer (2n = 50, all biarmed), are herein described and compared on the basis of conventional and silver staining, and CBG and RBG banding patterns. Meiotic data are also included. Karyotypes of K. paulensis, K. vanzoi, and C. ocellifer are reported here for the first time. Inter-generic variability in Ag-NORs location was detected with NORs occurring at the end of long arm of pair 1 in K. calcarata, K. paulensis, and K. vanzoi; pair 5 in C. ocellifer and pair 7 in A. ameiva. The location of NORs, along with the karyological differences between A. ameiva and the Central American species (A. auberi), corroboretes the molecular-based hypothesis that the genus Ameiva is paraphyletic. Inter-populational heteromorphism in Ag-NORs size was detected between populations of C. ocellifer. RBG and CBG banding data demonstrated that the biarmed condition of the C. ocellifer chromosomes is due to multiple pericentric inversion events instead of addition of constitutive heterochromatin. Differential-staining techniques used here revealed valuable information about Teiinae karyotypic diversity and made it possible to compare these species, contributing to both the better comprehension of their chromosomal evolution and issues on taxa systematics.


Assuntos
Evolução Biológica , Bandeamento Cromossômico , Cromossomos , Lagartos/genética , Animais , Genética Populacional , Cariotipagem , Lagartos/classificação , Filogenia , América do Sul
16.
Mol Phylogenet Evol ; 38(3): 719-30, 2006 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-16364664

RESUMO

The rapid increase in the ability to generate molecular data, and the focus on model-based methods for tree reconstruction have greatly advanced the use of phylogenetics in many fields. The recent flurry of new analytical techniques has focused almost solely on tree reconstruction, whereas alignment issues have received far less attention. In this paper, we use a diverse sampling of gene regions from lizards of the genus Mabuya to compare the impact, on phylogeny estimation, of new maximum likelihood alignment algorithms with more widely used methods. Sequences aligned under different optimality criteria are analyzed using partitioned Bayesian analysis with independent models and parameter settings for each gene region, and the most strongly supported phylogenetic hypothesis is then used to test the hypothesis of two colonizations of the New World by African scincid lizards. Our results show that the consistent use of model-based methods in both alignment and tree reconstruction leads to trees with more optimal likelihood scores than the use of independent criteria in alignment and tree reconstruction. We corroborate and extend earlier evidence for two independent colonizations of South America by scincid lizards. Relationships within South American Mabuya are found to be in need of taxonomic revision, specifically complexes under the names M. heathi, M. agilis, and M. bistriata (sensu, M.T. Rodrigues, Papeis Avulsos de Zoologia 41 (2000) 313).


Assuntos
Lagartos/genética , Alinhamento de Sequência , Animais , Sequência de Bases , Teorema de Bayes , Primers do DNA , Lagartos/classificação
17.
Genet. mol. biol ; 28(4): 700-709, Dec. 2005. ilus, tab
Artigo em Inglês | LILACS | ID: lil-451009

RESUMO

Cytogenetic studies were performed on five closely related microteiid lizards (Gymnophthalmini), three Calyptommatus species and Psilophthalmus paeminosus from the sand dunes of the middle São Francisco river in the semiarid caatinga of the Brazilian state of Bahia and Tretioscincus oriximinensis from the Brazilian Amazon region. The diploid chromosome number in Calyptommatus species was 2n = 58 in females and 2n = 57 in males due to a multiple X1X1X2X2:X1X2Y sex chromosomes system, while P. paeminosus was 2n = 44 (20M+24m): where M = macrochromosomes and m = microchromosomes) and T. oriximinensis 2n = 42 (18M+24m). A single pair of silver staining nucleolar organizing regions (Ag-NORs) characterizes all five species. Incorporation of 5-BrdU (Bromodeoxyuridine) followed by replication R-banding (RBG) karyotyping allowed the identification of the larger pairs of chromosomes through longitudinal bands and the late replicating regions. Our data reinforce the remarkable chromosomal variability that has been found in the Gymnophthalmidae and the importance of using differential staining for comparative cytogenetics within this group of lizards. Chromosomal evolution in Gymnophthalmini seems to have included chromosomal fission and fusion, pericentric inversions and variation in the amount and localization of constitutive heterochromatin and the Ag-NOR pattern. Different mechanisms of sex determination also evolved independently in this radiation.


Assuntos
Animais , DNA , Répteis/genética , Brasil , Bandeamento Cromossômico , Citogenética , Cariotipagem , Cromossomos Sexuais
18.
Hereditas ; 136(1): 51-7, 2002.
Artigo em Inglês | MEDLINE | ID: mdl-12184489

RESUMO

Cytogenetical analyses based on conventional and differential staining were performed for the first time on five species of the Brazilian lizard genus Enyalius: E. bibronii, E. bilineatus, E. iheringii, E. leechii, and E. perditus. The species share a similar 2n = 36 (12M + 24m) karyotype, comprised of 12 metacentric or submetacentric macrochromosomes, except for an acrocentric pair 6 that characterizes E. bibronii. The 24 microchromosomes were acrocentrics, but in E. perditus two meta/submetacentric microchromosome pairs were unambiguously identified. Karyotypes with 2n = 37 and 2n = 37/38 chromosomes were also observed in some specimens of E. bilineatus as a result of the presence of supernumerary chromosomes (Bs). Ag-NORs were always located at the distal region of the long arm of the submetacentric pair 2. The constitutive heterochromatin was mostly restricted to the pericentromeric regions of some macrochromosomes and microchromosomes. A XX:XY mechanism of sex determination with a dot-like Y microchromosome occurs in E. bilineatus, E. leechii, and E. perditus.


Assuntos
Iguanas/genética , Animais , Bandeamento Cromossômico , Cariotipagem
19.
Rev. bras. genét ; 17(4): 401-8, dez. 1994. ilus, tab
Artigo em Inglês | LILACS | ID: lil-164710

RESUMO

Cytogenetic studies were performed on six tropidurid lizards: Tropidurus mucujensis, T hispidus, T montanus, T semitaeniatus, T spinulosus and Uranoscodon superciliosus. Conventional and differential (C- and R-bands and Ag-NORs) staining techniques were employed for the characterization of the karyotypes. The analyses were carried out in order to establish the morphological characterization of macro and microchromosomes, the R- and C-banding patterns as well as the silver staining of nucleolus organizer regions (Ag-NORs). R-banding was obtained after in vitro incorporation of 5-bromodeoxyuridine (BrdU). For some species, the banding patterns are described for the first time. All species presented a diploid number of 2n=36, with a basic karyotype constituted by 12 metacentric or submetacentric macrochromosomes and 24 microchromosomes (12M+24m). Although these species present a conservative karyotype, most of them are distinguished by the morphology of the macro and microchromosomes, by location of Ag-NORs, and by amount and distribution of constitutive hetcrochromatin. Sex determination of the XX:XY type was found in T hispidus, T montanusand U. superciliosus. The presence of species specific karyotypes in T spinulosus and U. superciliosus is suggested.


Assuntos
Animais , Masculino , Feminino , Cromossomos , Lagartos/genética , Argentina , Brasil , Coloração e Rotulagem , Cariotipagem , Metáfase
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