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1.
Nat Commun ; 15(1): 327, 2024 Jan 06.
Artigo em Inglês | MEDLINE | ID: mdl-38184663

RESUMO

Soil fungi are a key constituent of global biodiversity and play a pivotal role in agroecosystems. How arable farming affects soil fungal biogeography and whether it has a disproportional impact on rare taxa is poorly understood. Here, we used the high-resolution PacBio Sequel targeting the entire ITS region to investigate the distribution of soil fungi in 217 sites across a 3000 km gradient in Europe. We found a consistently lower diversity of fungi in arable lands than grasslands, with geographic locations significantly impacting fungal community structures. Prevalent fungal groups became even more abundant, whereas rare groups became fewer or absent in arable lands, suggesting a biotic homogenization due to arable farming. The rare fungal groups were narrowly distributed and more common in grasslands. Our findings suggest that rare soil fungi are disproportionally affected by arable farming, and sustainable farming practices should protect rare taxa and the ecosystem services they support.


Assuntos
Ecossistema , Solo , Agricultura , Europa (Continente) , Fazendas
2.
Ann Bot ; 131(7): 1107-1119, 2023 08 25.
Artigo em Inglês | MEDLINE | ID: mdl-36976581

RESUMO

BACKGROUND AND AIMS: Arbuscular mycorrhizal (AM) fungi enhance the uptake of water and minerals by the plant hosts, alleviating plant stress. Therefore, AM fungal-plant interactions are particularly important in drylands and other stressful ecosystems. We aimed to determine the combined and independent effects of above- and below-ground plant community attributes (i.e. diversity and composition), soil heterogeneity and spatial covariates on the spatial structure of the AM fungal communities in a semiarid Mediterranean scrubland. Furthermore, we evaluated how the phylogenetic relatedness of both plants and AM fungi shapes these symbiotic relationships. METHODS: We characterized the composition and diversity of AM fungal and plant communities in a dry Mediterranean scrubland taxonomically and phylogenetically, using DNA metabarcoding and a spatially explicit sampling design at the plant neighbourhood scale. KEY RESULTS: The above- and below-ground plant community attributes, soil physicochemical properties and spatial variables explained unique fractions of AM fungal diversity and composition. Mainly, variations in plant composition affected the AM fungal composition and diversity. Our results also showed that particular AM fungal taxa tended to be associated with closely related plant species, suggesting the existence of a phylogenetic signal. Although soil texture, fertility and pH affected AM fungal community assembly, spatial factors had a greater influence on AM fungal community composition and diversity than soil physicochemical properties. CONCLUSIONS: Our results highlight that the more easily accessible above-ground vegetation is a reliable indicator of the linkages between plant roots and AM fungi. We also emphasize the importance of soil physicochemical properties in addition to below-ground plant information, while accounting for the phylogenetic relationships of both plants and fungi, because these factors improve our ability to predict the relationships between AM fungal and plant communities.


Assuntos
Micorrizas , Micorrizas/genética , Ecossistema , Filogenia , Solo/química , Simbiose , Raízes de Plantas , Plantas/microbiologia , Microbiologia do Solo , Fungos
3.
Glob Chang Biol ; 29(11): 3177-3192, 2023 06.
Artigo em Inglês | MEDLINE | ID: mdl-36897740

RESUMO

Organic carbon and aggregate stability are key features of soil quality and are important to consider when evaluating the potential of agricultural soils as carbon sinks. However, we lack a comprehensive understanding of how soil organic carbon (SOC) and aggregate stability respond to agricultural management across wide environmental gradients. Here, we assessed the impact of climatic factors, soil properties and agricultural management (including land use, crop cover, crop diversity, organic fertilization, and management intensity) on SOC and the mean weight diameter of soil aggregates, commonly used as an indicator for soil aggregate stability, across a 3000 km European gradient. Soil aggregate stability (-56%) and SOC stocks (-35%) in the topsoil (20 cm) were lower in croplands compared with neighboring grassland sites (uncropped sites with perennial vegetation and little or no external inputs). Land use and aridity were strong drivers of soil aggregation explaining 33% and 20% of the variation, respectively. SOC stocks were best explained by calcium content (20% of explained variation) followed by aridity (15%) and mean annual temperature (10%). We also found a threshold-like pattern for SOC stocks and aggregate stability in response to aridity, with lower values at sites with higher aridity. The impact of crop management on aggregate stability and SOC stocks appeared to be regulated by these thresholds, with more pronounced positive effects of crop diversity and more severe negative effects of crop management intensity in nondryland compared with dryland regions. We link the higher sensitivity of SOC stocks and aggregate stability in nondryland regions to a higher climatic potential for aggregate-mediated SOC stabilization. The presented findings are relevant for improving predictions of management effects on soil structure and C storage and highlight the need for site-specific agri-environmental policies to improve soil quality and C sequestration.


Assuntos
Carbono , Solo , Solo/química , Agricultura , Sequestro de Carbono
4.
Plant Soil ; 482(1-2): 261-276, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-36714192

RESUMO

Purpose: Biocrust communities, which are important regulators of multiple ecosystem functions in drylands, are highly sensitive to climate change. There is growing evidence of the negative impacts of warming on the performance of biocrust constituents like lichens in the field. Here, we aim to understand the physiological basis behind this pattern. Methods: Using a unique manipulative climate change experiment, we monitored every 30 minutes and for 9 months the chlorophyll a fluorescence and microclimatic conditions (lichen surface temperature, relative moisture and photosynthetically active radiation) of Psora decipiens, a key biocrust constituent in drylands worldwide. This long-term monitoring resulted in 11,847 records at the thallus-level, which allowed us to evaluate the impacts of ~2.3 °C simulated warming treatment on the physiology of Psora at an unprecedented level of detail. Results: Simulated warming and the associated decrease in relative moisture promoted by this treatment negatively impacted the physiology of Psora, especially during the diurnal period of the spring, when conditions are warmer and drier. These impacts were driven by a mechanism based on the reduction of the length of the periods allowing net photosynthesis, and by declines in Yield and Fv/Fm under simulated warming. Conclusion: Our study reveals the physiological basis explaining observed negative impacts of ongoing global warming on biocrust-forming lichens in the field. The functional response observed could limit the growth and cover of biocrust-forming lichens in drylands in the long-term, negatively impacting in key soil attributes such as biogeochemical cycles, water balance, biological activity and ability of controlling erosion. Supplementary Information: The online version contains supplementary material available at 10.1007/s11104-022-05686-w.

5.
Nat Ecol Evol ; 6(8): 1145-1154, 2022 08.
Artigo em Inglês | MEDLINE | ID: mdl-35798840

RESUMO

Phosphorus (P) acquisition is key for plant growth. Arbuscular mycorrhizal fungi (AMF) help plants acquire P from soil. Understanding which factors drive AMF-supported nutrient uptake is essential to develop more sustainable agroecosystems. Here we collected soils from 150 cereal fields and 60 non-cropped grassland sites across a 3,000 km trans-European gradient. In a greenhouse experiment, we tested the ability of AMF in these soils to forage for the radioisotope 33P from a hyphal compartment. AMF communities in grassland soils were much more efficient in acquiring 33P and transferred 64% more 33P to plants compared with AMF in cropland soils. Fungicide application best explained hyphal 33P transfer in cropland soils. The use of fungicides and subsequent decline in AMF richness in croplands reduced 33P uptake by 43%. Our results suggest that land-use intensity and fungicide use are major deterrents to the functioning and natural nutrient uptake capacity of AMF in agroecosystems.


Assuntos
Micorrizas , Praguicidas , Agricultura , Plantas/microbiologia , Solo , Microbiologia do Solo
6.
Philos Trans R Soc Lond B Biol Sci ; 377(1857): 20210387, 2022 08 15.
Artigo em Inglês | MEDLINE | ID: mdl-35757878

RESUMO

Determining the influence of climate in driving the global distribution of soil microbial communities is fundamental to help predict potential shifts in soil food webs and ecosystem functioning under global change scenarios. Herein, we used a global survey including 80 dryland ecosystems from six continents, and found that the relative abundance of ecological clusters formed by taxa involved in bacteria-fungi and bacteria-cercozoa bipartite networks was highly sensitive to changes in temperature and aridity. Importantly, such a result was maintained when controlling for soil, geographical location and vegetation attributes, being pH and soil organic carbon important determinants of the relative abundance of the ecological clusters. We also identified potential global associations between important soil microbial taxa, which can be useful to support the conservation of terrestrial ecosystems under global change scenarios. Our results suggest that increases in temperature and aridity such as those forecasted for the next decades in drylands could potentially lead to drastic changes in the community composition of functionally important bipartite networks within soil food webs. This could have important but unknown implications for the provision of key ecosystem functions and associated services driven by the organisms forming these networks if other taxa cannot cope with them. This article is part of the theme issue 'Ecological complexity and the biosphere: the next 30 years'.


Assuntos
Microbiota , Solo , Carbono , Ecossistema , Fungos , Solo/química , Microbiologia do Solo
7.
Sci Data ; 9(1): 14, 2022 01 20.
Artigo em Inglês | MEDLINE | ID: mdl-35058464

RESUMO

Drylands cover ~41% of the terrestrial surface. In these water-limited ecosystems, soil moisture contributes to multiple hydrological processes and is a crucial determinant of the activity and performance of above- and belowground organisms and of the ecosystem processes that rely on them. Thus, an accurate characterisation of the temporal dynamics of soil moisture is critical to improve our understanding of how dryland ecosystems function and are responding to ongoing climate change. Furthermore, it may help improve climatic forecasts and drought monitoring. Here we present the MOISCRUST dataset, a long-term (2006-2020) soil moisture dataset at a sub-daily resolution from five different microsites (vascular plants and biocrusts) in a Mediterranean semiarid dryland located in Central Spain. MOISCRUST is a unique dataset for improving our understanding on how both vascular plants and biocrusts determine soil water dynamics in drylands, and thus to better assess their hydrological impacts and responses to ongoing climate change.

8.
Histol Histopathol ; 37(2): 151-157, 2022 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-34725806

RESUMO

OBJECTIVE: To relate the Anterior Cruciate Ligament (ACL) innervation and histologic degeneration status to the knee osteoarthritis radiologic and functional status. DESIGN: Prospective observational study including 30 consecutive patients affected by primary knee osteoarthritis undergoing Total Knee Arthroplasty (TKA). All patients suffering secondary knee osteoarthritis, an antecedent of an infectious process, malignant process, autoimmune disorder, or previous knee surgery were excluded. We recorded biodemographic, clinical, and radiologic variables of all participants previous to the TKA procedure. ACL tissue was harvested during TKA standard procedure and the obtained sample was fixed in 4% formalin and paraffin-embedded. ACL cross-sections were stained by haematoxylin-eosin and Gallego staining for elastic and collagen fibers, and Sevier-Munger silver staining for nervous tissue. RESULTS: ACL samples histologic degeneration classification reported 15.4% normal, 23.1% slight, 26.9% mild, 11.5% moderate and 23.1% marked. We noted 46.2% large nervous fascicles, 15.4% medium fascicles, 3.8% small fascicles, and no nerve fibers were found in 34.6% ACL samples. No significant correlation was found between the histologic degeneration and the nervous fiber quantification (p>0.05, in all cases). We noted a significant histologic degeneration inverse correlation with the VAS scale (p=0.016), and nervous fiber quantification correlation with Lequesne maximum distance walked punctuation (p=0.043). We also noted greater nervous fiber quantification with minor radiological knee osteoarthritis (Kellgren-Lawrence grade II). CONCLUSIONS: ACL degeneration and innervation deficit may play a role in primary knee osteoarthritis onset, but the lack of a defining relationship among the different parameters assessed justifies further research in greater populations.


Assuntos
Lesões do Ligamento Cruzado Anterior , Reconstrução do Ligamento Cruzado Anterior , Osteoartrite do Joelho , Ligamento Cruzado Anterior , Lesões do Ligamento Cruzado Anterior/complicações , Lesões do Ligamento Cruzado Anterior/patologia , Lesões do Ligamento Cruzado Anterior/cirurgia , Reconstrução do Ligamento Cruzado Anterior/métodos , Humanos , Articulação do Joelho/cirurgia , Osteoartrite do Joelho/cirurgia
9.
Environ Microbiol ; 24(1): 341-356, 2022 01.
Artigo em Inglês | MEDLINE | ID: mdl-34796612

RESUMO

Archaeal communities in arable soils are dominated by Nitrososphaeria, a class within Thaumarchaeota comprising all known ammonia-oxidizing archaea (AOA). AOA are key players in the nitrogen cycle and defining their niche specialization can help predicting effects of environmental change on these communities. However, hierarchical effects of environmental filters on AOA and the delineation of niche preferences of nitrososphaerial lineages remain poorly understood. We used phylogenetic information at fine scale and machine learning approaches to identify climatic, edaphic and geomorphological drivers of Nitrososphaeria and other archaea along a 3000 km European gradient. Only limited insights into the ecology of the low-abundant archaeal classes could be inferred, but our analyses underlined the multifactorial nature of niche differentiation within Nitrososphaeria. Mean annual temperature, C:N ratio and pH were the best predictors of their diversity, evenness and distribution. Thresholds in the predictions could be defined for C:N ratio and cation exchange capacity. Furthermore, multiple, independent and recent specializations to soil pH were detected in the Nitrososphaeria phylogeny. The coexistence of widespread ecophysiological differences between closely related soil Nitrososphaeria highlights that their ecology is best studied at fine phylogenetic scale.


Assuntos
Amônia , Archaea , Nitrificação , Oxirredução , Filogenia , Solo , Microbiologia do Solo
10.
Stem Cell Res Ther ; 12(1): 451, 2021 08 11.
Artigo em Inglês | MEDLINE | ID: mdl-34380565

RESUMO

BACKGROUND: Polytrauma is a major clinical problem due to its impact on morbidity and mortality, especially among the younger population. Its pathophysiology is not completely elucidated, and the study of the involvement of certain cell populations with therapeutic potential, such as mesenchymal stromal cells (MSCs), is an area of growing interest, as mesenchymal cells have anti-inflammatory, immunoregulatory, and osteogenic potential. METHODS: In the present preliminary work, we have evaluated the characteristics of MSCs in terms of proliferation, immunophenotype, cell cycle, clonogenic capacity, and multilineage differentiation ability in a series of 18 patients with polytrauma and compared them to those from otherwise healthy patients undergoing elective spinal surgery. RESULTS: MSCs from polytrauma patients displayed higher proliferative potential with significantly higher cumulative population doublings, increased expression of some important cell adhesion molecules (CD105, CD166), and an early pre-osteogenic differentiation ability compared to those of the control group. CONCLUSIONS: MSCs could potentially be of help in the repair process of polytrauma patients contribute to both cell-tissue repair and anti-inflammatory response. This potential should be further explored in larger studies.


Assuntos
Células-Tronco Mesenquimais , Traumatismo Múltiplo , Diferenciação Celular , Proliferação de Células , Células Cultivadas , Humanos , Osteogênese
11.
Nat Food ; 2(1): 28-37, 2021 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-37117662

RESUMO

In natural ecosystems, positive effects of plant diversity on ecosystem functioning have been widely observed, yet whether this is true in cropping systems remains unclear. Here we assessed the impact of crop diversification on soil microbial diversity, soil multifunctionality (SMF) and crop yields in 155 cereal fields across a 3,000 km north-south European gradient. Overall, crop diversity showed a relatively minor effect on soil microbial diversity, SMF and yields. In contrast, the proportion of time with crop cover (including cash crops, cover crops or forage leys) during the past ten-year crop rotation had a much stronger impact. This suggests that increasing crop cover can enhance both yields and soil functioning, while also providing habitat for soil microorganisms. We found that SMF did not positively contribute to crop yields, highlighting that care must be taken to balance the provision of food with environmentally beneficial functions and services, since they do not always go hand in hand.

12.
New Phytol ; 228(3): 1070-1082, 2020 11.
Artigo em Inglês | MEDLINE | ID: mdl-32557640

RESUMO

Roots are assumed to play a major role in structuring soil microbial communities, but most studies exploring the relationships between microbes and plants at the community level have only used aboveground plant distribution as a proxy. However, a decoupling between belowground and aboveground plant components may occur due to differential spreading of plant canopies and root systems. Thus, soil microbe-plant links are not completely understood. Using a combination of DNA metabarcoding and spatially explicit sampling at the plant neighbourhood scale, we assessed the influence of the plant root community on soil bacterial and fungal diversity (species richness, composition and ß-diversity) in a dry Mediterranean scrubland. We found that root composition and biomass, but not richness, predict unique fractions of variation in microbial richness and composition. Moreover, bacterial ß-diversity was related to root ß-diversity, while fungal ß-diversity was related to aboveground plant ß-diversity, suggesting that plants differently influence both microbial groups. Our study highlights the role of plant distribution both belowground and aboveground, soil properties and other spatially structured factors in explaining the heterogeneity in soil microbial diversity. These results also show that incorporating data on both plant community compartments will further our understanding of the relationships between soil microbial and plant communities.


Assuntos
Biodiversidade , Solo , Bactérias/genética , Fungos , Raízes de Plantas , Microbiologia do Solo
13.
Eur Geriatr Med ; 11(4): 555-561, 2020 08.
Artigo em Inglês | MEDLINE | ID: mdl-32297256

RESUMO

PURPOSE: To analyze the associations of oral anticoagulant and antiplatelet treatments in older patients requiring surgical treatment for hip fracture with mortality, length of stay, waiting time to surgery and postsurgical immediate complications. METHODS: A prospective observational study, including surgically treated hip fracture patients aged 65 years and older. We analyzed admission status variables, and time to surgery, length of stay and immediate surgical and medical complications. We recorded a 2-year survival follow-up. RESULTS: Of the 237 patients studied, 32.5% received antiplatelet treatment and 17.7% received oral anticoagulant treatment. The overall 2-year mortality was 29.1%. The 2-year mortality rate reached the 33.8% for antiplatelet-treated patients (n.s.) and 45.2% for oral anticoagulated patients (p = 0.011). The length of stay increased significantly associated with the oral anticoagulant or high-dose antiplatelet treatment (p < 0.001). The same happened for the time to surgery (p < 0.001), but no delay was observed for patients with low-dose antiplatelet treatment. Oral anticoagulated and antiplatelet-treated patients had a higher Charlson comorbidity index (p = 0.004, p = 0.019) and ASA score (p = 0.006, p = 0.011). Those treatments were also associated with a higher rate of some immediate postsurgical medical complications. We found a relationship between low hemoglobin at admission and high-dose antiplatelet treatment (p = 0.044). CONCLUSIONS: Hip fracture patients following previous oral anticoagulant treatment have a higher 2-year mortality rate. The oral anticoagulant or high-dose antiplatelet treatments are significantly associated with an increase in the length of stay, related to time to surgery, but we could not demonstrate an effect on early mortality.


Assuntos
Fibrinolíticos , Fraturas do Quadril , Idoso , Anticoagulantes/efeitos adversos , Fraturas do Quadril/tratamento farmacológico , Humanos , Estudos Prospectivos
14.
Sci Total Environ ; 698: 133960, 2020 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-31493573

RESUMO

Disentangling the processes that drive plant community assembly is critical for understanding the patterns of plant diversity. We studied how different abiotic and biotic factors shape the interplay between the facets of alpine plant diversity, functional (FD), phylogenetic (PD) and taxonomic diversity (TD), in three different mountain ranges with contrasting evolutionary histories and climate conditions (Pyrenees and Mediterranean-type mountains in central Spain and Chilean Andes). We hypothesized that the causal links vary in strength and sign across regions. We used species inventories, functional trait data, and a phylogeny from 84 plant communities spread throughout three high-mountain alpine grasslands. Structural equation models were used to test our causal hypotheses on the relationships observed between the three diversity facets, and the abiotic (elevation, potential solar radiation and soil total nitrogen) and biotic factors (C-score). Despite our causal model presented a high variability in each mountain range, TD always decreased with increasing elevation (sum of direct and indirect effects). We also found some patterns suggesting that assembly processes could be climatically/biogeographically structured such as the negative relationship between FD and elevation found in Mediterranean mountains and the negative relationship between FD and TD found in both Spanish mountain ranges (independently of their different climates). A remarkable finding of this study is that ecological factors such as soil total nitrogen and elevation indirectly alter the relationships between the diversity facets. Our results suggest that diversity facets are simultaneously affected by different ecological and biogeographical/evolutionary processes, resulting in some general trends but also in parallel idiosyncratic patterns. Our findings highlight that although FD stand out by its explanatory power of community processes, TD and PD provide a complementary and necessary view that should not be disregarded in the attempt to globally explain community assembly processes.


Assuntos
Biodiversidade , Clima , Filogenia , Altitude , Chile , Mudança Climática , Ecologia , Monitoramento Ambiental , Plantas , Solo , Espanha
15.
Arch Orthop Trauma Surg ; 140(2): 239-245, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31707484

RESUMO

INTRODUCTION: Periprosthetic joint infection (PJI) is the most serious and feared complication in total knee arthroplasty (TKA) and can have catastrophic consequences. The number of total knee arthroplasties is increasing, so infections could also be greater in the future. The aim of this study is to identify the most relevant risk factors associated with infection after a total knee arthroplasty. METHODS: This is a case-control study of patients who underwent total knee arthroplasty at the University Hospital of Salamanca. We included 66 TKA PJI patients and 66 control TKA patients. Demographic and clinical variables were collected. A descriptive and inferential analysis was performed by logistic regression and attributable risk fraction assessed. RESULTS: Prolonged operative time (> 90') and tourniquet time (> 60') were the most relevant risk factors described (OR 40.77, AFE 0.97, p > 0.001 and OR 37.14, AFE 0.97, p < 0.001, respectively). The use of non-antibiotic-laded cement (OR 3.62), obesity (BMI > 30, OR 8.86), diabetes (OR 2.33), high ASA grade (III-IV, OR 15.30), and blood transfusion requirement (OR 4.60) were also statistically significant risk factors for TKA PJI. CONCLUSIONS: Our study provides evidence concerning that operative time, tourniquet time, cement type, diabetes, obesity, ASA grade, and blood transfusion requirement as independently associated risk factors for TKA PJI. Modifiable risk factors were specifically relevant, so we should be able to reduce the infection rate.


Assuntos
Artroplastia do Joelho , Infecções Relacionadas à Prótese/epidemiologia , Artroplastia do Joelho/efeitos adversos , Artroplastia do Joelho/estatística & dados numéricos , Cimentos Ósseos/efeitos adversos , Estudos de Casos e Controles , Humanos , Duração da Cirurgia , Fatores de Risco
16.
Data Brief ; 27: 104816, 2019 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-31788524

RESUMO

Vegetation above treeline constitutes one of the most vulnerable ecosystems to climate warming and other drivers of Global Change. Given the panorama of such an uncertain future facing these plant communities, it is critical to know how they respond to environmental changes and improve the knowledge on the potential impacts of climate change on their distribution. Recently, with the impressive development of trait-based approaches, relevant progress has been made to better understand the relationships between environmental conditions and plant communities. In this data paper, we describe data on abundances of 327 alpine plant species across 430 subplots of 2.4 m × 2.4 m in three mountain ranges (Sierra de Guadarrama and Pyrenees in Spain, and the Central Andes in Chile). We provide data on different environmental variables that represent variation in abiotic conditions and operate at different spatial scales (e.g., climatic, topographic and soil conditions). Data on six plant functional traits are also shown, which were measured on ten individuals of each species, following standard protocols. We provided the dataset as tables in the supplementary material. This information could be used to analyse the relationship between the alpine vegetation and changes in environmental conditions, and ultimately, to understand ecosystem functioning and guide conservation strategies of theses threatened and valuable ecosystems.

17.
Mol Ecol Resour ; 19(5): 1265-1277, 2019 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-31232514

RESUMO

Most work on plant community ecology has been performed above ground, neglecting the processes that occur in the soil. DNA metabarcoding, in which multiple species are computationally identified in bulk samples, can help to overcome the logistical limitations involved in sampling plant communities belowground. However, a major limitation of this methodology is the quantification of species' abundances based on the percentage of sequences assigned to each taxon. Using root tissues of five dominant species in a semi-arid Mediterranean shrubland (Bupleurum fruticescens, Helianthemum cinereum, Linum suffruticosum, Stipa pennata and Thymus vulgaris), we built pairwise mixtures of relative abundance (20%, 50% and 80% biomass), and implemented two methods (linear model fits and correction indices) to improve estimates of root biomass. We validated both methods with multispecies mixtures that simulate field-collected samples. For all species, we found a positive and highly significant relationship between the percentage of sequences and biomass in the mixtures (R2  = .44-.66), but the equations for each species (slope and intercept) differed among them, and two species were consistently over- and under-estimated. The correction indices greatly improved the estimates of biomass percentage for all five species in the multispecies mixtures, and reduced the overall error from 17% to 6%. Our results show that, through the use of post-sequencing quantification methods on mock communities, DNA metabarcoding can be effectively used to determine not only species' presence but also their relative abundance in field samples of root mixtures. Importantly, knowledge of these aspects will allow us to study key, yet poorly understood, belowground processes.


Assuntos
Biota , Código de Barras de DNA Taxonômico/métodos , Metagenômica/métodos , Plantas/classificação , Plantas/genética , DNA de Plantas/genética , Raízes de Plantas/classificação , Raízes de Plantas/genética
18.
Stem Cell Res Ther ; 10(1): 63, 2019 02 22.
Artigo em Inglês | MEDLINE | ID: mdl-30795797

RESUMO

BACKGROUND: Posterolateral spinal fusion with autologous bone graft is considered the "gold standard" for lumbar degenerative disc disease (DDD) when surgical treatment is indicated. The potential role of mesenchymal stromal cells (MSCs) to replace the bone graft in this setting has not been fully addressed. OBJECTIVE: To analyze the safety, feasibility and potential clinical efficacy of the implantation of autologous MSCs embedded with tricalcium phosphate as a therapeutic alternative to bone graft in patients with DDD during posterolateral spine fusion. STUDY DESIGN: Phase I/II single-arm prospective clinical trial. METHODS: Eleven patients with monosegmental DDD at L4-L5 or L5-S1 level were included. Autologous bone marrow-derived MSC were expanded in our Good Manufacturing Practice (GMP) Facility and implanted during spinal surgery embedded in a tricalcium phosphate carrier. Monitoring of patients included a postoperative period of 12 months with four visits (after the 1st, 3rd, 6th, and 12th month), with clinical and radiological assessment that included the visual analog scale (VAS), the Oswestry disability index (ODI), the Short-Form Health Survey (SF-36), the vertebral fusion grade observed through a simple Rx, and the evaluation of possible complications or adverse reactions. In addition, all patients were further followed up to 5 years for outcome. RESULTS: Median age of patients included was 44 years (range 30-58 years), and male/female ratio was (6/5) L4-L5 and L5-S1 DDD was present five and six patients, respectively. Autologous MSCs were expanded in all cases. There were no adverse effects related to cell implantation. Regarding efficacy, both VAS and ODI scores improved after surgery. Radiologically, 80% of patients achieved lumbar fusion at the end of the follow-up. No adverse effects related to the procedure were recorded. CONCLUSIONS: The use of autologous MSCs for spine fusion in patients with monosegmental degenerative disc disease is feasible, safe, and potentially effective. TRIAL REGISTRATION: no. EudraCT: 2010-018335-17 ; code Identifier: NCT01513694 ( clinicaltrials.gov ).


Assuntos
Degeneração do Disco Intervertebral/terapia , Transplante de Células-Tronco Mesenquimais/métodos , Células-Tronco Mesenquimais , Fusão Vertebral , Adolescente , Adulto , Idoso , Fosfatos de Cálcio/química , Fosfatos de Cálcio/uso terapêutico , Terapia Baseada em Transplante de Células e Tecidos , Feminino , Seguimentos , Humanos , Degeneração do Disco Intervertebral/fisiopatologia , Região Lombossacral/fisiopatologia , Masculino , Pessoa de Meia-Idade , Transplante Autólogo/métodos , Adulto Jovem
19.
Stem Cells Int ; 2018: 7089484, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30123292

RESUMO

Significant research efforts have been undertaken during the last decades to treat musculoskeletal disorders and improve patient's mobility and quality of life. The goal is the return of function as quickly and completely as possible. Cellular therapy has been increasingly employed in this setting. The design of this study was focused on cell-based alternatives. The present study aimed at investigating the bone regeneration capacity of xenogeneic human bone marrow-derived mesenchymal stromal cell (hMSC) implantation with tricalcium phosphate (TCP) granules in an immunocompetent rabbit model of critical-size bone defects at the femoral condyles. Two experimental groups, TCP and hMSC + TCP, were compared. Combination of TCP and hMSC did not affect cell viability or osteogenic differentiation. We also observed significantly higher bone regeneration in vivo in the hMSC + TCP group, which also displayed better TCP osteointegration. Also, evidence of hMSC contribution to a better TCP osteointegration was noticed. Finally, no inflammatory reaction was detected, besides the xenotransplantation of human cells into an immunocompetent recipient. In summary, hMSC combined with TCP granules is a potential combination for bone regeneration purposes that provides better preclinical results compared to TCP alone.

20.
PLoS One ; 13(7): e0200216, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29979767

RESUMO

Mountains are considered excellent natural laboratories for studying the determinants of plant diversity at contrasting spatial scales. To gain insights into how plant diversity is structured at different spatial scales, we surveyed high mountain plant communities in the Chilean Andes where man-driven perturbations are rare. This was done along elevational gradients located at different latitudes taking into account factors that act at fine scales, including abiotic (potential solar radiation and soil quality) and biotic (species interactions) factors, and considering multiple spatial scales. Species richness, inverse of Simpson's concentration (Dequiv), beta-diversity and plant cover were estimated using the percentage of cover per species recorded in 34 sites in the different regions with contrasted climates. Overall, plant species richness, Dequiv and plant cover were lower in sites located at higher latitudes. We found a unimodal relationship between species richness and elevation and this pattern was constant independently of the regional climatic conditions. Soil quality decreased the beta-diversity among the plots in each massif and increased the richness, the Dequiv and cover. Segregated patterns of species co-occurrence were related to increases in richness, Dequiv and plant cover at finer scales. Our results showed that elevation patterns of alpine plant diversity remained constant along the regions although the mechanisms underlying these diversity patterns may differ among climatic regions. They also suggested that the patterns of plant diversity in alpine ecosystems respond to a series of factors (abiotic and biotic) that act jointly at different spatial scale determining the assemblages of local communities, but their importance can only be assessed using a multi-scale spatial approach.


Assuntos
Altitude , Biodiversidade , Plantas , Chile , Clima , Ecossistema , Solo , Especificidade da Espécie
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