Exploring SoySNP50K and USDA Germplasm Collection Data to Find New QTLs Associated with Protein and Oil Content in Brazilian Genotypes.

Genetic diversity within a germplasm collection plays a vital role in the success of breeding programs. However, comprehending this diversity and identifying accessions with desirable traits pose significant challenges. This study utilized publicly available data to investigate SNP markers associated with protein and oil content in Brazilian soybeans. Through this research, twenty-two new QTLs (Quantitative Trait Loci) were identified, and we highlighted the substantial influence of Roanoke, Lee and Bragg ancestor on the genetic makeup of Brazilian soybean varieties. Our findings demonstrate that certain markers are being lost in modern cultivars, while others maintain or even increase their frequency. These observations indicate genomic regions that have undergone selection during soybean introduction in Brazil and could be valuable in breeding programs aimed at enhancing protein or oil content.

Reference Genes and Expression Analysis of Seed Desaturases Genes in Soybean Mutant Accessions.

Soybean oil is the second most-produced vegetable oil worldwide. To enhance the nutritional quality and oxidative stability of soybean oil, many soybean breeding programs are trying to increase oleic acid content and reduce linoleic and linolenic acid contents. The fatty acid profile of soybean oil is controlled by many genes, including those which code for omega-3 and omega-6 desaturases. Mutations in GmFAD2-1 and GmFAD3 genes are widely studied and their combinations can produce soybean oil with high oleic and low linoleic and linolenic content. However, few studies evaluate the effect of these mutations on gene expression. Therefore, the present study sought to identify reference genes, evaluate the expression of GmFAD2-1 and GmFAD3 seed desaturase genes in thirteen wild-type and mutated soybean accessions, and associate the expression patterns with fatty acid composition and with the GmFAD2-1 and GmFAD3 genotypes. GmCONS7 and GmUKN2 were identified as the best reference genes for combined use to normalize data. The GmFAD2-1A mutation of PI603452 accession was associated with a decrease in gene expression of GmFAD2-1A; however, downregulation may not be due to the truncated enzyme structure alone. These results suggested that there are factors other than GmFAD2-1A and GmFAD2-1B that have a considerable effect on oleic content, at least in soybeans with mutations in these two genes.

Characterization of a new GmFAD3A allele in Brazilian CS303TNKCA soybean cultivar.

KEY MESSAGE: We molecularly characterized a new mutation in the GmFAD3A gene associated with low linolenic content in the Brazilian soybean cultivar CS303TNKCA and developed a molecular marker to select this mutation. Soybean is one of the most important crops cultivated worldwide. Soybean oil has 13% palmitic acid, 4% stearic acid, 20% oleic acid, 55% linoleic acid and 8% linolenic acid. Breeding programs are developing varieties with high oleic and low polyunsaturated fatty acids (linoleic and linolenic) to improve the oil oxidative stability and make the varieties more attractive for the soy industry. The main goal of this study was to characterize the low linoleic acid trait in CS303TNKCA cultivar. We sequenced CS303TNKCA GmFAD3A, GmFAD3B and GmFAD3C genes and identified an adenine point deletion in the GmFAD3A exon 5 (delA). This alteration creates a premature stop codon, leading to a truncated protein with just 207 residues that result in a non-functional enzyme. Analysis of enzymatic activity by heterologous expression in yeast support delA as the cause of low linolenic acid content in CS303TNKCA. Thus, we developed a TaqMan genotyping assay to associate delA with low linolenic acid content in segregating populations. Lines homozygous for delA had a linolenic acid content of 3.3 to 4.4%, and the variation at this locus accounted for 50.83 to 73.70% of the phenotypic variation. This molecular marker is a new tool to introgress the low linolenic acid trait into elite soybean cultivars and can be used to combine with high oleic trait markers to produce soybean with enhanced economic value. The advantage of using CS303TNKCA compared to other lines available in the literature is that this cultivar has good agronomic characteristics and is adapted to Brazilian conditions.

Genetic divergence of soybean genotypes in relation to grain components / Divergência genética de genótipos de soja quanto a componentes do grão

ABSTRACT: The objective of this paper was to estimate the genetic divergence among 49 soybean ( Glycine max L. Merrill .) genotypes to assist grain quality-focused breeding programs in the choice of progenitors. The genetic divergence was estimated using the Mahalanobis generalized distance from the percentages of protein, oil, and fatty acids oleic, linoleic and linolenic after cultivation of genotypes in different environments. Genotypes were grouped by agglomerative methods and the two and three-dimensional projections of the distance matrix were obtained. The average protein and oil contents in the four environments ranged from 34.25 to 45.18% and from 16.48 to 23.01%, respectively. The average contents of the fatty acids oleic, linoleic and linolenic ranged from 20.2 to 42.41%, from 44.17 to 63.18%, and from 5.89 to 10.39%, respectively. The genetic distances ranged from 0.11 to 251.02 and indicated genetic variability among the accessions. The most divergent pair of accessions was PI417360/CD01RR8384, followed by PI417360/B3PTA213-3-4 and PI417360/BARC-8. The most similar par of accessions was CS3032PTA276-1-2/CS3032PTA190-5-1, followed by UFV18/M-SOY8914 and BRSMG Garantia/CD983321RR. In this study we indicated as promising in terms of genetic variability the hybridizations involving BARC-8, CD2013PTA, CD01RR8384, CS303TNKCA, PI181544, and PI417360. Among these genotypes we can stand out BARC-8 and CD2013PTA, with protein contents above 43%, and CD01RR8384 and CS303TNKCA, with oil contents above 20%. The use of these genetically divergent genotypes and with high phenotypic means in future crosses should produce desirable recombinants for grain quality.

RESUMO: O objetivo deste trabalho foi estimar a divergência genética entre 49 genótipos de soja ( Glycinemax L. Merrill.), visando auxiliar programas de melhoramento voltados à qualidade do grão na escolha de progenitores. A divergência genética foi estimada por meio da distância generalizada de Mahalanobis a partir dos percentuais de proteína, óleo e ácidos graxos oleico, linoleico e linolênico após cultivo dos genótipos em diferentes ambientes. Os genótipos foram agrupados por métodos aglomerativos e as projeções bi e tridimensional da matriz de distância foram obtidas. Os teores médios de proteína e óleo nos quatro ambientes variaram de 34,25 a 45,18% e de 16,48 a 23,01%, respectivamente. Os teores médios dos ácidos graxos oleico, linoleico e linolênico variaram de 20,2 a 42,41%, de 44,17 a 63,18% e de 5,89 a 10,39%, respectivamente. As distâncias genéticas variaram de 0,11 a 251,02 e indicaram variabilidade genética entre os acessos. O par de acessos mais divergente foi PI417360/CD01RR8384, seguido por PI417360/B3PTA213-3-4 e PI417360/BARC-8. Já o par de acessos mais similar foi CS3032PTA276-1-2/CS3032PTA190-5-1, seguido por UFV18/M-SOY8914 e BRSMG Garantia/CD983321RR. Neste estudo, são indicadas como promissoras em termos de variabilidade genética as hibridações envolvendo BARC-8, CD2013PTA, CD01RR8384, CS303TNKCA, PI181544 e PI417360. Dentre esses genótipos, destacam-se BARC-8 e CD2013PTA, com teores proteicos acima de 43%, e CD01RR8384 e CS303TNKCA, com teores de óleo acima de 20%. A utilização desses genótipos geneticamente divergentes e com elevadas médias fenotípicas em futuros cruzamentos deverá produzir recombinantes desejáveis para a qualidade do grão.

Fortificação de massas de pizza com farinha integral de soja do novo cultivar 'UFVTN 105AP' / Fortification of pizza dough's with whole soybean flour of new cultivar 'UFVTN 105AP'

Objetivou-se caracterizar as propriedades físico-químicas e a correlação entre a textura instrumental e a aceitação sensorial de massas de pizza fortificadas com farinha integral de soja. Foram desenvolvidas formulações contendo 0%, 30%, 50% e 70% de farinha integral de soja. A análise de textura indicou que a adição de 50% de soja elevou (P<0,05) a dureza, gomosidade, elasticidade e mastigabilidade da massa de pizza. Os teores de proteína, fibra alimentar e dos minerais cálcio, zinco, magnésio, potássio, cobre e fósforo foram maiores (P<0,05) com o aumento da concentração da farinha de soja. O conteúdo de lipídio foi maior (P<0,05) na massa de pizza com 70% de farinha integral de soja. A formulação controle e aquela contendo 30% de farinha integral de soja foram as mais aceitas, sendo positivamente correlacionadas com a textura instrumental, uma vez que apresentaram menor dureza, gomosidade, elasticidade e mastigabilidade. Portanto, a farinha de soja adicionou minerais antioxidantes, proteína, fibra dietética, ácidos graxos essenciais (ω-6 e ω-3) e manteve a aceitação das massas de pizza, possibilitando o preparo de um alimento com alegação de saúde e qualidade sensorial.

This study aimed to characterize the physicochemical properties and the correlation between the instrumental texture and the sensory acceptance of pizza dough's fortified with whole soybean flour. Formulations were developed to contain 0%, 30%, 50% and 70% whole soybean flour. The texture analysis indicated that the addition of 50% soybean increased (P<0.05) firmness, gumminess, springiness and chewiness of pizza dough. The contents of protein, dietary fiber and and minerals calcium zinc, magnesium, potassium, copper and phosphorus were higher (P<0.05) with increasing concentration of soybean flour. The content of lipid was higher (P<0.05) in the pizza dough with 70% whole soybean flour. The control formulation and that containing 30% whole soybean flour were the most accepted, being positively correlated with the instrumental texture, since it had a lower firmness, gumminess, springiness and chewiness. Thus, the whole soybean flour added antioxidant minerals, protein, dietary fiber, essential fatty acids (ω-6 and ω-3) and maintained the acceptance of the pizza dough's, allowing to prepare food with health claim and sensory quality.

Farinhas mistas de trigo e de soja agregam valor nutricional e sensorial em pães / Wheat-soybeans mix flours improve the bread nutritional and sensorial characteristics

Este trabalho teve como objetivo avaliar a composição centesimal e as características sensoriais de pães elaborados com concentração proporcional de farinhas de soja integral e de trigo. Foram elaboradas quatro formulações de pães doces, utilizando-se farinhas mistas de trigo (50%) e de soja (50%) de diferentes cultivares, destinados à alimentação humana, sendo um cultivar convencional, dois sem lipoxigenasese o quarto com baixo teor de inibidor de tripsina. Foram avaliados os teores de carboidratos, proteínas, lipídios, calorias, resíduo mineral fixo e umidade. A aceitação sensorial foi testada por 101 consumidores empregando-se a escala hedônica estruturada de nove pontos; os dados foram analisados por meio de técnica de mapa de preferência interno. A incorporação da farinha de soja integral na mesma concentração da farinha de trigo (razão 50:50) nas formulações aumentou o valor nutricional dos pães, especialmente quanto aos teores de proteína e de lipídio, em comparação ao pão convencional. A aceitação das formulações sugere que a utilização da farinha de soja de cultivares sem lipoxigenases minimizou os problemas sensoriaisi ndesejáveis, característicos da soja. O uso de farinhas mistas de soja e trigo na mesma proporção agregou valor nutricional e promoveu boa aceitação sensorial dos produtos, especialmente nos pães elaborados com farinha de soja sem lipoxigenases.

Efeito do inibidor de protease Kunitz sobre níveis de lipoxigenases em sementes de soja / Effect of protease inhibitor on the levels of lipoxygenase in soybean seeds

As lipoxigenases (LOX) são responsáveis pelo "beany flavor", sabor característico da soja [Glycine max. (L.) Merrill], que é o maior obstáculo ao consumo da soja nos países ocidentais. O inibidor de tripsina Kunitz (KTI) é responsável por 80 por cento da inibição da atividade tríptica, além de provocar hiperplasia pancreática em animais monogástricos. Essas duas características são muito importantes em programas de melhoramento que visam à melhoria da qualidade da soja. Objetivou-se, neste trabalho verificar o efeito do inibidor de protease (KTI), sobre níveis de LOX em sementes de soja, nos seguintes genótipos: KTI+/LOX+, KTI+/LOX-, KTI-/LOX+ e KTI-/LOX-. As LOXs foram identificadas por teste colorimétrico, atividade enzimática e eletroforese em gel de poliacrilamida. O teor de proteína foi quantificado pelo método do ácido bicinconínico para determinação da atividade específica de LOX. Observou-se que, para o genótipo KTI+/LOX+, a atividade específica de LOX 1 foi alta, variando de 177,92 a 206,94 UA/mg de proteína e para LOX 3 variou de 17,90 a 19,85 UA/mg de proteína; para KTI+/LOX- e KTI-/LOX- não foi detectada atividade de LOX e que para o genótipo KTI-/LOX+ a atividade específica para LOX 1 variou de 117,24 a 124,64 UA/mg de proteína, e de 17,35 a 20,29 UA/mg de proteína para LOX 3. Houve uma redução de 40 por cento na atividade específica de LOX1 e de 1 por cento para LOX 3, no genótipo KTI-/LOX+, quando comparados ao KTI+/LOX+. Esses resultados comprovam uma associação negativa entre o inibidor de tripsina Kunitz e a atividade de lipoxigenases.

Lipoxygenases (LOX) are responsible for the beany flavor, which is the most important obstacle for the consumption of soybean [Glycine max. (L.) Merrill] products in Western countries. The Kunitz trypsin inhibitor (KTI) is responsible for 80 percent of the inhibition of tryptic activity in soybean seeds, and besides it can cause pancreatic hyperplasia in monogastric animals. These two traits are very important in soybean breeding programs that aim the improvement of soy protein quality. The objective of this study was to verify the influence of KTI on LOX levels in soybean seeds by analyzing the following genotypes: KTI+/LOX+, KTI+/LOX-, KTI-/LOX+ and KTI-/LOX-. LOX 1 and LOX 3 were identified by colorimetric, activity and electrophoretic assays. Protein content was determined by the bicinchoninic method for determination of LOX specific activity. For genotype KTI+/LOX+, LOX 1 specific activity was high varying from 177.92 to 206.94 AU/mg of protein and LOX 3 activity varied from 17.90 to 19.85 AU/mg of protein. No LOX activity was detected in genotypes KTI+/LOX- and KTI-/LOX-. For genotype KTI-/LOX+, LOX 1 activity varied from 117.24 to 124.64 AU/mg of protein, and the activity of LOX 3 from 17.35 to 20.29 AU/mg of protein. There was a reduction of 40 percent on LOX 1 specific activity and 1 percent for LOX 3 in the KTI-/LOX+ genotype in comparison to genotype KTI+/LOX+. These results indicate an inverse relationship between the presence of the Kunitz trypsin inhibitor in soybean seeds and lipoxygenase activity.

Biometrical analyses of linolenic acid content of soybean seeds

The genetic reduction of linolenic acid levels increases the quality and stability of soybean oil. The objective of this study was to determine the inheritance and evaluate the nature and magnitude of gene effects on soybean seed linolenic acid level. Means and variances of F-1, F-2, and F-3 generations were made from the cross between accession BARC-12 (low linolenic acid content) and the commercial Brazilian cultivar CAC-1 (normal linolenic acid content). The results demonstrated that linolenic acid content in soybean is under the genetic control of a small number of genes. The additive model explained the means for the three generations and for the parents. Non-allelic gene interactions had little effect on the determination of genotypic values for the individuals. The generation means and population variation analyses demonstrated that the dominance deviations contribute little to the trait. These results showed that backcross breeding programs can be used to introduce the low linolenic acid content trait into soybean seeds, since it is possible to identify with very high accuracy the desired genotypes in segregating populations