LIF spectrum for the localised S0 → S1(ππ*) excitation in the H-bonded anthranilic acid dimer: Symmetry breaking or coupling of vibrations.

This study aims to investigate the impact of the π â†’ π* excitation localised in one monomer on the equilibrium geometry and oscillations of the AA dimer. Several low-frequency vibrations appear in pairs in the LIF spectrum because oscillations involving intermolecular hydrogen bonds are coupled, generating approximately symmetric and antisymmetric combinations (especially the COOH rocking modes, LIF: 295 and 301 cm-1). Furthermore, quantitative evaluation based on the TDDFT(B3LYP) results indicates that a dozen among 90 intramolecular oscillations are strongly coupled. In contrast, most vibrations are decoupled or weakly coupled, since they involve remote parts of the monomers. This makes several single vibrations active in the LIF spectrum (including the bending mode of the NH···O intramolecular hydrogen bond associated the strongest vibronic band 442 cm-1), while the other in each pair remains inactive. The reason for decoupling of oscillations and symmetry breaking is that the π â†’ π* electronic excitation is entirely localised within one of the monomers, which makes them no longer equivalent in terms of geometry and dynamics. Additionally, the excitation of one monomer induces strengthening and shortening by 6 pm of only one intermolecular hydrogen bond linking the carboxylic groups of both molecules. This causes the 1.7° in-plane distortion of the dimer and lowering of its symmetry to Cs group (from C2h for the S0 state). The distortion induces the activity of two low-frequency in-plane intermolecular vibrations, i.e. the geared oscillation (LIF: 58 cm-1) and the shearing motion (99 cm-1) of the monomers.

Photocatalytic activity of layered MoS2 in the reductive degradation of bromophenol blue.

Molybdenum disulphide (MoS2) is a layered material with interesting photocatalytic properties. In this study, a layered MoS2 was produced using a hydrothermal method. The obtained material was characterised by XRD (X-ray diffraction), XPS (X-ray photoelectron spectroscopy), SEM (scanning electron microscopy), UV-Vis spectroscopy, DLS (dynamic light scattering), and zeta potential analysis. For the evaluation of the photocatalytic properties of layered MoS2, a solution of bromophenol blue (BPB) and the catalyst was illuminated for 120 minutes. According to the experimental results, MoS2 exhibited excellent catalytic activity in BPB degradation. The MoS2 preparation method enabled improved light harvesting, avoided fast charge recombination (related to bulk MoS2), and created a large number of suitable electron transfer sites for photocatalytic reactions. Simulation of BPB decay and bromide production was carried out for a further understanding of MoS2 photocatalytic action. The simulation results proved the reduction mechanism of BPB photodegradation.

High energy radiation - Induced cooperative reductive/oxidative mechanism of perfluorooctanoate anion (PFOA) decomposition in aqueous solution.

The mechanism of high-energy radiation induced degradation of perfluorooctanoate anion (PFOA, C7F15COO-) was investigated in aqueous solutions. Identification and quantification of transient species was performed by pulse radiolysis and of final products by gas and ion chromatography, electrochemical method using fluoride ion-selective electrode and ESI-MS after γ-radiolysis. Experimental data were further supported by kinetic simulations and quantum mechanical calculations. Radiation induced degradation of PFOA includes as a primary step one-electron reduction of PFOA by hydrated electrons (e-aq) resulting in formation of [C7F15COO-]●-. The rate constants of this reaction were found to be in the range 7.7 × 107-1.3 × 108 M-1s-1 for ionic strength of the solutions in the range 0.01-0.1 M and were independent of pH of the solutions. At pH > 11 [C7F15COO-]●- tends to defluorination whereas at lower pH undergoes protonation forming [C7F15COOH]•-. A sequence of consecutive reactions involving [C7F15COOH]•- leads to PFOA regeneration what explains a high radiation resistance of PFOA at moderately acidic solutions. A simultaneous presence of oxidizing transient species (●OH) in the irradiated system enhanced decomposition of (C7F14)·COO- as well as [C7F15COOH]•-. The key steps in this complex radical mechanism are the reactions of both these radical anions with ●OH leading to semi-stable products which further undergo consecutive thermal reactions. On the other hand, direct reactions of PFOA with ●OH and ●H were found to be relatively slow (7 × 103 and <4 × 107 M-1s-1, respectively) and do not play relevant role in PFOA degradation. Collected for the first time results, such as dependence of selected reaction rate constants and selected products radiation chemical yields on pH as well as finding of several semi-stable products, missing in previous studies, indicate incompleteness of published earlier reaction pathways of PFOA degradation. The presented overall mechanism explains experimental results and verifies previously suggested mechanisms found in the literature.

Photocatalytic Degradation of 4,4'-Isopropylidenebis(2,6-dibromophenol) on Sulfur-Doped Nano TiO2.

In present work, we examine the photocatalytic properties of S-doped TiO2 (S1, S2) compared to bare TiO2 (S0) in present work. The photocatalytic tests were performed in alkaline aqueous solutions (pH = 10) of three differently substituted phenols (phenol (I), 4,4'-isopropylidenebisphenol (II), and 4,4'-isopropylidenebis(2,6-dibromophenol) (III)). The activity of the catalysts was evaluated by monitoring I, II, III degradation in the reaction mixture. The physicochemical properties (particle size, ζ-potential, Ebg, Eu, E0cb, E0vb, σo, KL) of the catalysts were established, and we demonstrated their influence on degradation reaction kinetics. Substrate degradation rates are consistent with first-order kinetics. The apparent conversion constants of the tested compounds (kapp) in all cases reveal the sulfur-loaded catalyst S2 to show the best photocatalytic activity (for compound I and II S1 and S2 are similarly effective). The different efficiency of photocatalytic degradation I, II and III can be explained by the interactions between the catalyst and the substrate solution. The presence of bromine substituents in the benzene ring additionally allows reduction reactions. The yield of bromide ion release in the degradation reaction III corresponds to the Langmuir constant. The mixed oxidation-reduction degradation mechanism results in higher degradation efficiency. In general, the presence of sulfur atoms in the catalyst network improves the degradation efficiency, but too much sulfur is not desired for the reduction pathway.

Depression as is Seen by Molecular Spectroscopy. Phospholipid- Protein Balance in Affective Disorders and Dementia.

There is an expanding field of research investigating the instrumental methods to measure the development of affective disorders. The goal of the commentary is to turn the attention of medical practitioners at the molecular spectroscopy techniques (FTIR, Raman and UV-Vis) that can be applied for monitoring and quantification of the phospholipid-protein balance in human blood serum of depressed patients. Even facial overview of cited original research strongly suggests that disturbed phospholipid-protein balance could be one of the biomarkers of affective disorders. The blood serum monitoring of depressed patients would serve as a tool for more effective holistic therapy.

Essentials and Perspectives of Computational Modelling Assistance for CNS-oriented Nanoparticle-based Drug Delivery Systems.

The blood-brain barrier (BBB) is a complex system controlling two-way substances traffic between circulatory (cardiovascular) system and central nervous system (CNS). It is almost perfectly crafted to regulate brain homeostasis and to permit selective transport of molecules that are essential for brain function. For potential drug candidates, the CNSoriented neuropharmaceuticals as well as for those of primary targets in the periphery, the extent to which a substance in the circulation gains access to the CNS seems crucial. With the advent of nanopharmacology, the problem of the BBB permeability for drug nano-carriers gains new significance. Compared to some other fields of medicinal chemistry, the computational science of nano-delivery is still premature to offer the black-box type solutions, especially for the BBB-case. However, even its enormous complexity can spell out the physical principles, and as such subjected to computation. The basic understanding of various physicochemical parameters describing the brain uptake is required to take advantage of their usage for the BBB-nano delivery. This mini-review provides a sketchy introduction of essential concepts allowing application of computational simulation to the BBB-nano delivery design.

New Insights into the Reaction Paths of 4-Carboxybenzophenone Triplet with Oligopeptides Containing N- and C-Terminal Methionine Residues.

The oxidation processes of l-Met-(Pro)n-l-Met peptides that contain two Met residues located on the N and C termini and separated by a defined number (n = 0-4) of proline residues were investigated in aqueous solutions using laser flash photolysis. The use of such peptides allowed for distance control between the sulfur atoms located in the side chains of the Met residues. Interactions between side chains of the Met residues were probed by the observation of transients with σ*-type 2c-3e (S∴S)+, (S∴N)+, and (S∴O)+ bonds as well as of α-(alkylthio)alkyl radicals (αS). This approach enabled the monitoring, in real time, of the efficiency and kinetics of interactions between amino acid chains. Such knowledge is important, inter alia, for long-distance electron-transfer (ET) processes because amino acid side chains can serve as relay stations. The yields of these transients (measured as quantum yields (Φ)) were found to be dependent on the number of Pro residues, however, not dependent in a simple way on the average distance between sulfur atoms in Met residues. A decrease in the yield of the (S∴S)+ species with the number of Pro residues occurred at the expense of an increase in the yields of intramolecular three electron-bonded (S∴O)+/(S∴N)+ radical cations and αS radicals. These observations were rationalized by the fact that the time required for adequate overlap of the bonding orbitals is a key factor effecting the yield of the (S∴S)+ species. The time, however, can be controlled not only by the average distance but also by the specific geometrical and conformational properties of the peptide molecules.

Formation of a Three-Electron Sulfur-Sulfur Bond as a Probe for Interaction between Side Chains of Methionine Residues.

The mechanism of oxidation processes of l-Met-(Pro)n-l-Met peptides that contain two Met residues located on the N- and C-terminal and separated by a defined number (n = 0-4) of proline residues was investigated in aqueous solutions using pulse radiolysis. The use of such peptides allowed for distance control between the sulfur atoms located in the side chains of the Met residues. The formation of a contact between the side chains of the Met residues was probed by the observation of transients with σ*-type 2c-3e S∴S and S∴O bonds as well as of α-(alkylthio)alkyl radicals (αS). This approach enabled the monitoring, in real time, of the efficiency and kinetics of interactions between methionine side chains. Such knowledge is important, inter alia, for long-distance electron transfer processes because methionine side chains can serve as relay stations and also for many aspects of protein folding when the formation of a contact between two amino acid residues in an unfolded polypeptide chain plays a central role in protein-folding mechanisms. The yields of these transients (measured as G-values) were found to be dependent on the number of Pro residues; however, they were not dependent in a simple way on the average distance ⟨rS-S⟩ between the sulfur atoms in Met residues. A decrease in the yield of the (S∴S)(+) species with an increase in the number of Pro residues in the bridge occurred at the expense of an increase in the yields of the intramolecular three-electron-bonded (S∴O)(+) radical cations and αS radicals. A detailed understanding of these trends in the chemical yields was developed by modeling the underlying chemical kinetics with Langevin dynamical simulations of the various oligoproline peptide chains and combining them with a simple statistical mechanical theory on the end-to-end contact rates for polymer chains. This analysis showed that the formation of a contact between terminal Met residues in the peptides with 0-2 Pro residues was controlled by the activated formation of (S∴S)(+) whereas in the peptides with 3 and 4 Pro residues, by the relative diffusion of the sulfur radical cation and unoxidized sulfur atom. In this picture, the dynamics of the other radical products can be seen to be only indirectly dependent on the length of the proline bridges because their formation is in competition with (S∴S)(+) formation.

Separation of an aqueous extract Inonotus obliquus (Chaga). A novel look at the efficiency of its influence on proliferation of A549 human lung carcinoma cells.

Aqueous extract of Inonotus obliquus was hydrolyzed in dilute hydrochloric acid. The products were extracted applying organic solvents, and separated chromatographically on a silica gel-packed column. Eluted fractions were analyzed by means of GC-MS. The presence of hydrocarbons, alcohols, phenols and various carbonyl compounds in analyzed fractions has been detected and quantified. Preliminarily experiments on the influence of certain separated samples on the proliferation of A549 human lung carcinoma cells were performed. Therefore, we hypothesize that the major antiproliferative effects are related to the presence of benzaldehyde, which is a benzyl alcohol metabolite formed in situ in the cells culture with the yield moderated by the presence of trace amounts of "high molecular mass compounds".

Efficient alpha-(alkylthio)alkyl-type radical formation in (*)OH-induced oxidation of alpha-(methylthio)acetamide.

Pulse radiolysis with UV-vis/ESR detection and steady-state gamma-radiolysis, combined with chromatographic techniques, were used to investigate the detailed mechanism of the (*)OH-induced oxidation of alpha-(methylthio)acetamide (alpha-MTA) in aqueous solution. The main pathway involves the formation of hydroxysulfuranyl radicals alpha-MTA-(>S(*)-OH) and alpha-(alkylthio)alkyl radicals H(3)C-S-(*)CH-C( horizontal lineO)-NH(2) (lambda(max) S(*)-OH) radicals undergo efficient conversion to intermolecularly three-electron-bonded dimeric radical cations of alpha-MTA-(>S thereforeS<)(+) (lambda(max) = 480 nm), especially for high alpha-MTA concentrations. In contrast, at low proton concentrations, alpha-MTA-(>S(*)-OH) radicals decompose via the elimination of water, formed through intramolecular hydrogen (attached to the nitrogen atom) transfer to the hydroxysulfuranyl moiety within a six-membered structure. This process leads to the formation of the imine radical H(3)C-S-CH(2)-C( horizontal lineO)(*)NH, which subsequently decays in three independent channels. The first decay channel begins with a beta-scission followed by hydrolysis and a subsequent Hofmann rearrangement. One of the end products of this first decay channel is CO(2), which was detected. The second decay channel involves an intramolecular hydrogen transfer from the deltaC carbon atom to the radical imine site producing the alpha-(alkylthio)alkyl radical H(2)C(*)-S-CH(2)-C( horizontal lineO)-NH(2). In the third decay channel there is a 1,3-hydrogen shift in the imine radical which forms the radical H(3)C-S-(*)CH-C( horizontal lineO)-NH(2). The presence of the amide group induces more complex radical chemistry that leads unexpectedly to the degradation of the CH(3)SCH(2)CONH(2) molecule into gaseous products, CO(2) and NH(3). These features of the mechanism of the (*)OH-induced oxidation of alpha-MTA are quite different from those seen in other organic sulfides in neutral solutions.

Molecular sieves in medicine.

During the last few decades microporous and mesoporous materials have been considered for medical use due to biological properties and stability in biological environment. Zeolites have been investigated as drug carriers, and as adjuvants in anticancer therapy, dietetic supplements or antimicrobial agents. This review gives a brief overview of the major aspects of molecular sieves applications in medicine.

Head-to-tail interactions in tyrosine/benzophenone dyads in the ground and the excited state: NMR and laser flash photolysis studies.

The formation of head-to-tail contacts in de novo synthesized benzophenone/tyrosine dyads, bp logical sum Tyr, was probed in the ground and excited triplet state by NMR techniques and laser flash photolysis, respectively. The high affinity of triplet-excited ketones towards phenols was used to trace the geometric demands for high reactivity in the excited state. A retardation effect on the rates with increasing hydrogen-bond-acceptor ability of the solvent is correlated with ground-state masking of the phenol. In a given solvent the efficiencies of the intramolecular hydrogen-atom-transfer reaction depend strongly on the properties of the linker: rate constants for the intramolecular quenching of the triplet state cover the range of 10(5) to 10(8) s(-1). The observed order of reactivity correlates to a) the probability of close contacts (from molecular-dynamics simulations) and b) the extent of the electronic overlap between the pi systems of the donor and acceptor moieties (from NMR). A broad survey of the NMR spectra in nine different solvents showed that head-to-tail interactions between the aromatic moieties of the bp logical sum Tyr dyads already exist in the ground state. Favourable aromatic-aromatic interactions in the ground state appear to correspond to high excited-state reactivity.

Conformational influence on the type of stabilization of sulfur radical cations in cyclic peptides.

The free-radical chemistry of two oxidized cyclic dipeptides is investigated using time-resolved optical and conductivity detection. Two cyclic dipeptides, cyclo-Gly-L-Met and cyclo-D-Met-L-Met, are synthesized and irradiated with nanosecond pulses of electrons, which initiate the oxidation of the methionine side chains with hydroxyl radicals from the radiolysis of water. The cyclic peptides are taken to be models for the interior of proteins where there are no terminal groups. This opens up the possibility that neighboring-group effects can be studied directly between the initially formed sulfur radical cations and the heteroatoms associated with the peptide bonds. Such complexation of the sulfur radical cations is observed with the amide nitrogen atoms. In addition, intermolecular stabilization with the unoxidized sulfur atoms on separate cyclic dipeptide molecules is observed. Little or no intramolecular stabilization by the unoxidized sulfur in the neighboring methionine occurs in cyclo-D-Met-L-Met, in contrast to the previously observed intramolecular sulfur stabilization of the sulfur radical cation in the isomer cyclo-L-Met-L-Met. This contrasting behavior is rationalized by conformational differences in the two isomers as seen through molecular-modeling simulations. The implications for the oxidation of the protein calmodulin, which contains multiple residues of methionine, are discussed as having analogous determining factors.

Sulfur radical cation-peptide bond complex in the one-electron oxidation of S-methylglutathione.

Neighboring group participation was investigated in the *OH-induced oxidation of S-methylglutathione in aqueous solutions. Nanosecond pulse radiolysis was used to obtain the spectra of the reaction intermediates and their kinetics. Depending on the pH, and the concentration of S-methylglutathione, pulse irradiation leads to different transients. The transients observed were an intramolecularly bonded [>S thereforeNH2]+ intermediate, intermolecularly S thereforeS-bonded radical cation, alpha-(alkylthio)alkyl radicals, alpha-amino-alkyl-type radical, and an intramolecularly (S thereforeO)+-bonded intermediate. The latter radical is of particular note in that it supports recent observations of sulfur radical cations complexed with the oxygen atoms of peptide bonds and thus has biological and medical implications. This (S thereforeO)+-bonded intermediate had an absorption maximum at 390 nm, and we estimated its formation rate to be >or=6x10(7) s(-1). It is in equilibrium with the intermolecularly S thereforeS-bonded radical cation, and they decay together on the time scale of a few hundred microseconds. The S thereforeS-bonded radical cation is formed from the monomeric sulfur radical cation (>S*+) and an unoxidized S-methylglutathione molecule with the rate constant of 1.0x10(9) M(-1) s(-1). The short-lived [>S thereforeNH2]+ intermediate is a precursor of decarboxylation, absorbs at approximately 390 nm, and decays on the time scale of hundreds of nanoseconds. Additional insight into the details of the association of sulfur radical cations with the oxygen atoms of the peptide bonds was gained by comparing the behavior of the S-methylglutathione (S thereforeO+-bonded five-membered ring) with the peptide gamma-Glu-Met-Gly (S thereforeO+-bonded six-membered ring). Conclusions from experimental observations were supported by molecular modeling calculations.

Stabilization of sulfide radical cations through complexation with the peptide bond: mechanisms relevant to oxidation of proteins containing multiple methionine residues.

The recent study on the *OH-induced oxidation of calmodulin, a regulatory "calcium sensor" protein containing nine methionine (Met) residues, has supported the first experimental evidence in a protein for the formation of S therefore N three-electron bonded radical complexes involving the sulfur atom of a methionine residue and the amide groups in adjacent peptide bonds. To characterize reactions of oxidized methionine residues in proteins containing multiple methionine residues in more detail, in the current study, a small model cyclic dipeptide, c-(L-Met-L-Met), was oxidized by *OH radicals generated via pulse radiolysis and the ensuing reactive intermediates were monitored by time-resolved UV-vis spectroscopic and conductometric techniques. The picture that emerges from this investigation shows there is an efficient formation of the Met (S therefore N) radicals, in spite of the close proximity of two sulfur atoms, located in the side chains of methionine residues, and in spite of the close proximity of sulfur atoms and oxygen atoms, located in the peptide bonds. Moreover, it is shown, for the first time, that the formation of Met(S therefore N) radicals can proceed directly, via H+-transfer, with the involvement of hydrogen from the peptide bond to an intermediary hydroxysulfuranyl radical. Ultimately, the Met(S therefore N) radicals decayed via two different pH-dependent reaction pathways, (i) conversion into sulfur-sulfur, intramolecular, three-electron-bonded radical cations and (ii) a proposed hydrolytic cleavage of the protonated form of the intramolecular, three-electron-bonded radicals [Met(S therefore N)/Met(S therefore NH)+] followed by electron transfer and decarboxylation. Surprisingly, also alpha-(alkylthio)alkyl radicals enter the latter mechanism in a pH-dependent manner. Density functional theory computations were performed on the model c-(L-Met-Gly) and its radicals in order to obtain optimizations and energies to aid in the interpretation of the experiments on c-(L-Met-L-Met).

Application of nicotine enantiomers, derivatives and analogues in therapy of neurodegenerative disorders.

This review gives a brief overview over the major aspects of application of the nicotine alkaloid and its close derivatives in the therapy of some neurodegenerative disorders and diseases (e.g. Alzheimer's disease, Parkinson's disease, Tourette's syndrome, schizophrenia etc.). The issues concerning methods of nicotine analysis and isolation, and some molecular aspects of nicotine pharmacology are included. The natural and synthetic analogues of nicotine that are considered for medical practice are also mentioned. The molecular properties of two naturally occurring nicotine enantiomers are compared--the less-common but less-toxic (R)-nicotine is suggested as a natural compound that may find its place in pharmaceutical practice.

EPR spectroscopy and theoretical study of gamma-irradiated asparagine and aspartic acid in solid state.

Aspartic acid (Asp) and asparagine (Asn) are vulnerable amino acids. One-electron addition or withdrawal reactions initiate many deleterious processes involving these amino acids. To study these redox processes we have irradiated by gamma-rays asparagine or aspartic acid in the solid state. The nature of the resulting free radicals was determined by electron paramagnetic resonance (EPR) and by calculations using DFT methods in various environments. Reactions initiated by electron transfer are different for both amino acids: Asn anion loses hydrogen atom whereas the cation undergoes decarboxylation. Conversely, Asp cation loses hydrogen atom from amine group, which triggers decarboxylation.

EPR and DFT study on the stabilization of radiation-generated methyl radicals in dehydrated Na-A zeolite.

Electron paramagnetic resonance (EPR) spectroscopy was applied to study paramagnetic species stabilized in Na-A zeolite exposed to gaseous methane and gamma-irradiated at 77 K. Two types of EPR spectra were recorded during thermal annealing of zeolite up to room temperature. Owing to the results for the zeolite exposed to (13)CH(4) the multiplet observed at 110 K was assigned to a (.-)CH(3)...Na(+) complex. After decay of the multiplet, the isotropic quartet of methyl radical was recorded in the temperature range of 170-280 K. On the basis of the EPR parameters it is postulated that (.-)CH(3) radicals in this temperature region are able to freely rotate inside the zeolite cage. The structures of the (.-)CH(3)...Na(+) adsorption complex and respective hyperfine coupling constants were calculated by applying DFT quantum chemical methods. Two different models were applied to represent the zeolite framework: the 6T structure of one six-membered ring and the 3T cluster. The hyperfine coupling constants calculated for the (.-)CH(3)...Na(+) adsorption complex for both applied models show very good agreement with those obtained experimentally.

Mutation of the Phe20 residue in Alzheimer's amyloid beta-peptide might decrease its toxicity due to disruption of the Met35-cupric site electron transfer pathway.

It has been proposed that the Met residue in the C-terminal domain of the Alzheimer's disease beta-amyloid peptide (betaA) serves as a source of electrons for the Cu(II)-catalyzed reduction of molecular oxygen to hydrogen peroxide. Mechanistically, this process would require the long distance electron transfer from the thioether sulfur to the peptide-bound copper. Therefore, the electron transfer pathways between the Met35 sulfur atom and the cupric site in the N terminus of betaA congeners have been analyzed applying semiclassical models of long distance electron transfer. Simulations performed for several betaA conformers collected along the 6 ns Langevin Dynamics trajectories suggest that the presence of the Phe20 residue in the peptide is required for feasibility of the electron transfer. Thus, I would like to propose the mutation Phe20Ala in betaA as a potential way to reduce its neurotoxicity.

Free radical reactions of methionine in peptides: mechanisms relevant to beta-amyloid oxidation and Alzheimer's disease.

The pathogenesis of Alzheimer's disease is strongly associated with the formation and deposition of beta-amyloid peptide (beta AP) in the brain. This peptide contains a methionine (Met) residue in the C-terminal domain, which is important for its neurotoxicity and its propensity to reduce transition metals and to form reactive oxygen species. Theoretical studies have proposed the formation of beta AP Met radical cations as intermediates, but no experimental evidence with regard to formation and reactivity of these species in beta AP is available, largely due to the insolubility of the peptide. To define the potential reactions of Met radical cations in beta AP, we have performed time-resolved UV spectroscopic and conductivity studies with small model peptides, which show for the first time that (i) Met radical cations in peptides can be stabilized through bond formation with either the oxygen or the nitrogen atoms of adjacent peptide bonds; (ii) the formation of sulfur-oxygen bonds is kinetically preferred, but on longer time scales, sulfur-oxygen bonds convert into sulfur-nitrogen bonds in a pH-dependent manner; and (iii) ultimately, sulfur-nitrogen bonded radicals may transform intramolecularly into carbon-centered radicals located on the (alpha)C moiety of the peptide backbone.